Wall clock time and date at job start Tue Mar 31 2020 15:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42891 * 114.00006 * 2 1 4 4 C 1.53001 * 109.54630 * 58.13359 * 3 2 1 5 5 N 1.46496 * 109.46569 * 59.53505 * 4 3 2 6 6 C 1.34781 * 119.99707 * 174.83909 * 5 4 3 7 7 O 1.21346 * 119.99842 * 0.02562 * 6 5 4 8 8 C 1.49452 * 120.00231 * 179.72061 * 6 5 4 9 9 O 1.21348 * 119.99517 * 0.27809 * 8 6 5 10 10 N 1.34772 * 120.00100 * 180.27595 * 8 6 5 11 11 C 1.46504 * 119.99818 * 180.02562 * 10 8 6 12 12 C 1.52996 * 109.46925 * 180.02562 * 11 10 8 13 13 C 1.53000 * 109.47159 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.47359 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00210 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00281 * 179.97438 * 14 13 12 17 17 N 1.31521 * 119.99569 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00312 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.47046 * 90.00003 * 18 16 14 20 20 H 1.48500 * 109.47212 * 210.00378 * 18 16 14 21 21 H 1.48506 * 109.46895 * 330.00482 * 18 16 14 22 22 C 1.53182 * 109.54446 * 178.31487 * 3 2 1 23 23 C 1.53099 * 109.15621 * 63.06349 * 22 3 2 24 24 O 1.42898 * 109.49173 * 57.47460 * 23 22 3 25 25 C 1.42904 * 114.09848 * 298.88932 * 24 23 22 26 26 C 1.53090 * 109.41419 * 61.15823 * 25 24 23 27 27 H 1.09008 * 109.46810 * 179.63664 * 1 2 3 28 28 H 1.09000 * 109.46929 * 299.62440 * 1 2 3 29 29 H 1.08987 * 109.47381 * 59.63255 * 1 2 3 30 30 H 1.08998 * 109.46943 * 299.53563 * 4 3 2 31 31 H 1.09003 * 109.47327 * 179.53322 * 4 3 2 32 32 H 0.97000 * 120.00652 * 354.83658 * 5 4 3 33 33 H 0.97000 * 119.99829 * 0.02562 * 10 8 6 34 34 H 1.08996 * 109.47042 * 299.99948 * 11 10 8 35 35 H 1.08997 * 109.47234 * 60.00076 * 11 10 8 36 36 H 1.08996 * 109.47103 * 299.99770 * 12 11 10 37 37 H 1.09003 * 109.47457 * 59.99600 * 12 11 10 38 38 H 1.09005 * 109.46898 * 299.99599 * 13 12 11 39 39 H 1.08997 * 109.47130 * 59.99856 * 13 12 11 40 40 H 0.97001 * 119.99588 * 179.97438 * 17 16 14 41 41 H 1.09005 * 109.52113 * 182.87740 * 22 3 2 42 42 H 1.08999 * 109.51885 * 303.06371 * 22 3 2 43 43 H 1.09009 * 109.40664 * 297.49101 * 23 22 3 44 44 H 1.08999 * 109.48975 * 177.51384 * 23 22 3 45 45 H 1.08996 * 109.48027 * 301.17236 * 25 24 23 46 46 H 1.09001 * 109.49194 * 181.14503 * 25 24 23 47 47 H 1.08996 * 109.52269 * 182.49006 * 26 25 24 48 48 H 1.09001 * 109.57975 * 62.32570 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.5230 2.0826 1.2245 5 7 1.9098 1.3668 2.4428 6 6 1.6773 1.9177 3.6506 7 8 1.1470 3.0064 3.7290 8 6 2.0661 1.1848 4.8937 9 8 2.5959 0.0959 4.8153 10 7 1.8285 1.7332 6.1016 11 6 2.2103 1.0150 7.3201 12 6 1.8319 1.8507 8.5445 13 6 2.2311 1.1010 9.8170 14 6 1.8590 1.9244 11.0230 15 1 1.3855 2.8866 10.8947 16 6 2.1230 1.4496 12.2902 17 7 2.7001 0.2781 12.4464 18 14 1.6624 2.4706 13.7851 19 1 0.2826 2.1271 14.2131 20 1 2.6100 2.1835 14.8918 21 1 1.7284 3.9132 13.4386 22 6 3.5369 1.1866 0.0425 23 6 4.0212 0.4791 -1.2259 24 8 3.5801 1.2053 -2.3749 25 6 2.1594 1.3060 -2.4915 26 6 1.6004 2.0488 -1.2752 27 1 -0.3633 -1.0277 -0.0065 28 1 -0.3633 0.5080 0.8933 29 1 -0.3633 0.5195 -0.8865 30 1 0.4377 2.1763 1.1872 31 1 1.9735 3.0752 1.2278 32 1 2.3333 0.4964 2.3802 33 1 1.4047 2.6035 6.1642 34 1 1.6875 0.0593 7.3574 35 1 3.2862 0.8407 7.3171 36 1 2.3543 2.8066 8.5074 37 1 0.7558 2.0247 8.5472 38 1 1.7089 0.1449 9.8543 39 1 3.3072 0.9274 9.8140 40 1 2.8862 -0.0558 13.3379 41 1 3.9783 2.1819 0.0940 42 1 3.8331 0.6099 0.9187 43 1 3.6128 -0.5311 -1.2555 44 1 5.1101 0.4310 -1.2222 45 1 1.7267 0.3067 -2.5377 46 1 1.9069 1.8537 -3.3995 47 1 0.5131 2.0880 -1.3403 48 1 2.0006 3.0624 -1.2504 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322764253.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:59:52 Heat of formation + Delta-G solvation = -176.016155 kcal Electronic energy + Delta-G solvation = -28081.846781 eV Core-core repulsion = 23943.644935 eV Total energy + Delta-G solvation = -4138.201846 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.16016 -40.31011 -38.54182 -37.75736 -35.83219 -35.00355 -33.37400 -32.85632 -31.74245 -31.26350 -28.49671 -27.35503 -27.08019 -24.79029 -24.06233 -23.18190 -22.18489 -20.80080 -20.59572 -20.07837 -18.55012 -17.30479 -16.99901 -16.51487 -16.46576 -16.34048 -16.17682 -15.89709 -15.70931 -15.35815 -15.10896 -14.74325 -14.73055 -14.44816 -13.83397 -13.72578 -13.46619 -13.31068 -13.02758 -12.94360 -12.67178 -12.32460 -12.04632 -11.90931 -11.81500 -11.77657 -11.72744 -11.13538 -10.92511 -10.87163 -10.77881 -10.61750 -10.30242 -9.95192 -9.91969 -9.78241 -9.56269 -9.39436 -9.14729 -9.00572 -8.39128 -6.03907 -4.06945 1.37427 2.24312 3.12246 3.18993 3.30158 3.36575 3.39588 3.41888 3.63523 3.94393 4.00927 4.14692 4.41834 4.43724 4.49023 4.73280 4.76020 4.82531 4.89161 4.90179 5.02731 5.06240 5.13894 5.21186 5.28513 5.31393 5.32055 5.45952 5.50591 5.57262 5.63562 5.67142 5.86802 6.06066 6.24407 6.52105 6.58480 6.66421 6.73447 6.86565 6.93372 7.36466 7.60259 7.67100 7.71813 7.94323 8.01897 8.35548 8.99507 9.57421 11.07325 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.034828 B = 0.001741 C = 0.001724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.754585 B =16077.054106 C =16240.105684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.370 6.370 3 C 0.105 3.895 4 C 0.094 3.906 5 N -0.697 5.697 6 C 0.508 3.492 7 O -0.521 6.521 8 C 0.500 3.500 9 O -0.524 6.524 10 N -0.691 5.691 11 C 0.114 3.886 12 C -0.123 4.123 13 C 0.024 3.976 14 C -0.523 4.523 15 H 0.056 0.944 16 C 0.057 3.943 17 N -0.894 5.894 18 Si 0.894 3.106 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.274 1.274 22 C -0.143 4.143 23 C 0.063 3.937 24 O -0.382 6.382 25 C 0.067 3.933 26 C -0.179 4.179 27 H 0.090 0.910 28 H 0.047 0.953 29 H 0.046 0.954 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.417 0.583 33 H 0.411 0.589 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.020 0.980 39 H 0.020 0.980 40 H 0.261 0.739 41 H 0.089 0.911 42 H 0.086 0.914 43 H 0.061 0.939 44 H 0.097 0.903 45 H 0.057 0.943 46 H 0.095 0.905 47 H 0.082 0.918 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.426 1.612 -32.323 32.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.289 6.289 3 C 0.065 3.935 4 C -0.030 4.030 5 N -0.352 5.352 6 C 0.289 3.711 7 O -0.397 6.397 8 C 0.280 3.720 9 O -0.401 6.401 10 N -0.343 5.343 11 C -0.008 4.008 12 C -0.161 4.161 13 C -0.013 4.013 14 C -0.561 4.561 15 H 0.074 0.926 16 C -0.145 4.145 17 N -0.533 5.533 18 Si 0.722 3.278 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.181 4.181 23 C -0.013 4.013 24 O -0.301 6.301 25 C -0.010 4.010 26 C -0.217 4.217 27 H 0.109 0.891 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.095 0.905 31 H 0.104 0.896 32 H 0.255 0.745 33 H 0.247 0.753 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.038 0.962 39 H 0.038 0.962 40 H 0.071 0.929 41 H 0.108 0.892 42 H 0.105 0.895 43 H 0.080 0.920 44 H 0.115 0.885 45 H 0.075 0.925 46 H 0.113 0.887 47 H 0.101 0.899 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.122 1.401 -32.293 32.393 hybrid contribution -0.769 0.662 1.210 1.579 sum -2.890 2.063 -31.083 31.285 Atomic orbital electron populations 1.22879 0.80895 1.03323 1.00433 1.87996 1.20029 1.26104 1.94801 1.21786 0.94628 0.84047 0.93066 1.22037 1.01140 0.96644 0.83171 1.45617 1.61617 1.23606 1.04378 1.20388 0.79641 0.85985 0.85081 1.90762 1.41397 1.20337 1.87187 1.19959 0.80909 0.86254 0.84917 1.90768 1.42092 1.20245 1.87019 1.46071 1.59618 1.23251 1.05336 1.21851 1.00798 0.96183 0.82001 1.21929 1.00870 0.99009 0.94266 1.19034 0.97113 0.95552 0.89644 1.21197 1.39793 1.04227 0.90906 0.92574 1.25032 0.95170 0.95098 0.99179 1.69966 1.42356 1.18297 1.22643 0.86567 0.78257 0.80552 0.82457 1.20656 1.21197 1.19875 1.22241 0.92014 1.03418 1.00378 1.22548 0.99960 0.94852 0.83956 1.87938 1.21407 1.75900 1.44864 1.22455 0.81506 0.99908 0.97088 1.22727 1.02495 1.01137 0.95360 0.89139 0.93426 0.93568 0.90533 0.89551 0.74526 0.75328 0.91077 0.91051 0.92422 0.92437 0.96192 0.96174 0.92915 0.89214 0.89527 0.92045 0.88513 0.92483 0.88710 0.89947 0.89406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 10.21 101.05 1.03 1.15 16 2 O -0.37 -2.72 8.98 -35.23 -0.32 -3.04 16 3 C 0.10 0.68 0.36 -90.43 -0.03 0.65 16 4 C 0.09 0.73 4.16 -4.04 -0.02 0.71 16 5 N -0.70 -6.90 5.12 -60.73 -0.31 -7.21 16 6 C 0.51 6.51 7.89 -11.58 -0.09 6.41 16 7 O -0.52 -7.58 16.47 5.50 0.09 -7.48 16 8 C 0.50 7.38 7.89 -11.59 -0.09 7.29 16 9 O -0.52 -8.83 16.48 5.50 0.09 -8.74 16 10 N -0.69 -10.26 5.55 -60.73 -0.34 -10.59 16 11 C 0.11 1.94 5.67 -4.04 -0.02 1.91 16 12 C -0.12 -2.37 5.27 -26.73 -0.14 -2.51 16 13 C 0.02 0.60 4.97 -27.88 -0.14 0.47 16 14 C -0.52 -14.52 9.11 -34.44 -0.31 -14.83 16 15 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.89 -26.59 13.29 55.43 0.74 -25.86 16 18 Si 0.89 21.45 29.54 -169.99 -5.02 16.42 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 22 C -0.14 -0.94 4.94 -26.59 -0.13 -1.07 16 23 C 0.06 0.43 6.69 37.21 0.25 0.68 16 24 O -0.38 -3.06 10.77 -35.23 -0.38 -3.44 16 25 C 0.07 0.39 6.69 37.20 0.25 0.64 16 26 C -0.18 -0.93 4.70 -26.59 -0.12 -1.06 16 27 H 0.09 0.46 8.14 -51.92 -0.42 0.04 16 28 H 0.05 0.30 6.42 -51.93 -0.33 -0.03 16 29 H 0.05 0.20 6.38 -51.94 -0.33 -0.14 16 30 H 0.08 0.59 6.56 -51.93 -0.34 0.25 16 31 H 0.09 0.68 8.13 -51.93 -0.42 0.26 16 32 H 0.42 4.06 6.83 -40.82 -0.28 3.78 16 33 H 0.41 5.56 7.94 -40.82 -0.32 5.24 16 34 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 41 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.09 0.59 7.12 -51.93 -0.37 0.22 16 43 H 0.06 0.43 7.82 -51.92 -0.41 0.03 16 44 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.06 0.34 7.82 -51.93 -0.41 -0.07 16 46 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.08 0.33 6.43 -51.93 -0.33 0.00 16 48 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 388.60 15.07 5.86 5.86 Total: -1.00 -32.69 388.60 -7.00 -39.70 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -7.74 Total: 2.43 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: 0.33 Total: 1.96 kcal Atomic # 7 Polarization: -43.75 SS G_CDS: 0.09 Total: -43.67 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: -0.51 Total: -22.70 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.69 -7.00 -39.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322764253.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.321 kcal (2) G-P(sol) polarization free energy of solvation -32.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds