Wall clock time and date at job start Tue Mar 31 2020 16:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 120.00088 * 2 1 4 4 H 1.48497 * 109.47472 * 239.99975 * 3 2 1 5 5 H 1.48506 * 109.47190 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47148 * 120.00196 * 3 2 1 7 7 C 1.38812 * 119.99935 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99851 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99907 * 359.97438 * 7 2 1 10 10 C 1.46502 * 119.99797 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46760 * 172.80741 * 10 9 7 12 12 H 1.08998 * 109.87523 * 48.83281 * 11 10 9 13 13 C 1.54332 * 109.88098 * 170.00709 * 11 10 9 14 14 C 1.55440 * 102.96936 * 141.61069 * 13 11 10 15 15 C 1.54911 * 101.45234 * 324.51807 * 14 13 11 16 16 N 1.47026 * 109.88545 * 287.81027 * 11 10 9 17 17 C 1.34777 * 125.64033 * 61.66486 * 16 11 10 18 18 O 1.21552 * 120.00548 * 356.64002 * 17 16 11 19 19 C 1.47847 * 119.99393 * 176.63428 * 17 16 11 20 20 C 1.39606 * 120.27094 * 25.32852 * 19 17 16 21 21 C 1.37634 * 119.61656 * 180.02562 * 20 19 17 22 22 C 1.39072 * 120.75576 * 359.92689 * 21 20 19 23 23 C 1.37826 * 119.90808 * 359.91143 * 22 21 20 24 24 C 1.38653 * 119.81915 * 359.96409 * 23 22 21 25 25 C 1.50665 * 122.55808 * 180.39714 * 23 22 21 26 26 C 1.52730 * 110.59802 * 342.29248 * 25 23 22 27 27 C 1.53317 * 108.36842 * 51.11376 * 26 25 23 28 28 C 1.50688 * 117.59933 * 179.68929 * 22 21 20 29 29 H 0.97000 * 119.99771 * 359.97438 * 1 2 3 30 30 H 0.96997 * 120.00227 * 0.02562 * 9 7 2 31 31 H 1.09004 * 109.47171 * 52.81191 * 10 9 7 32 32 H 1.08996 * 109.47256 * 292.80991 * 10 9 7 33 33 H 1.08997 * 110.71791 * 259.97382 * 13 11 10 34 34 H 1.08999 * 110.72013 * 23.24367 * 13 11 10 35 35 H 1.09006 * 111.11351 * 206.46566 * 14 13 11 36 36 H 1.08999 * 111.01483 * 82.52124 * 14 13 11 37 37 H 1.09009 * 110.36153 * 278.11299 * 15 14 13 38 38 H 1.08998 * 110.36989 * 155.90358 * 15 14 13 39 39 H 1.08004 * 120.19003 * 0.04586 * 20 19 17 40 40 H 1.07997 * 119.61657 * 179.91016 * 21 20 19 41 41 H 1.08006 * 119.78104 * 180.02562 * 24 23 22 42 42 H 1.09001 * 109.25129 * 222.00269 * 25 23 22 43 43 H 1.08996 * 109.24993 * 102.58109 * 25 23 22 44 44 H 1.08999 * 109.68205 * 291.39330 * 26 25 23 45 45 H 1.08996 * 109.68144 * 170.83463 * 26 25 23 46 46 H 1.08998 * 109.68458 * 170.32297 * 27 26 25 47 47 H 1.08999 * 109.71778 * 49.78931 * 27 26 25 48 48 H 1.09007 * 109.24883 * 282.76721 * 28 22 21 49 49 H 1.08998 * 109.24753 * 42.22163 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2852 2.7465 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0736 -4.8140 0.1801 12 1 0.2402 -4.7032 -0.5136 13 6 1.7917 -6.1575 -0.0675 14 6 1.1660 -7.0906 1.0068 15 6 0.9684 -6.1093 2.1891 16 7 0.5741 -4.8344 1.5627 17 6 -0.1284 -3.8506 2.1586 18 8 -0.3461 -2.8131 1.5639 19 6 -0.6344 -4.0334 3.5357 20 6 0.0029 -4.9178 4.4080 21 6 -0.4799 -5.0779 5.6869 22 6 -1.5942 -4.3679 6.1205 23 6 -2.2258 -3.4908 5.2653 24 6 -1.7464 -3.3198 3.9756 25 6 -3.4313 -2.6852 5.6750 26 6 -4.0769 -3.2816 6.9241 27 6 -2.9879 -3.4735 7.9861 28 6 -2.0662 -4.6034 7.5321 29 1 -0.4850 0.8401 0.0004 30 1 0.3556 -2.3881 -0.0005 31 1 2.7777 -3.6609 0.8182 32 1 2.5847 -3.7723 -0.9478 33 1 1.5806 -6.5284 -1.0704 34 1 2.8655 -6.0553 0.0889 35 1 1.8515 -7.8941 1.2762 36 1 0.2107 -7.4913 0.6679 37 1 1.9004 -5.9884 2.7414 38 1 0.1797 -6.4668 2.8510 39 1 0.8699 -5.4727 4.0812 40 1 0.0122 -5.7631 6.3612 41 1 -2.2416 -2.6320 3.3060 42 1 -4.1564 -2.6842 4.8612 43 1 -3.1246 -1.6603 5.8835 44 1 -4.5264 -4.2444 6.6809 45 1 -4.8422 -2.6033 7.3012 46 1 -3.4469 -3.7349 8.9395 47 1 -2.4142 -2.5531 8.0950 48 1 -2.6073 -5.5486 7.5771 49 1 -1.2033 -4.6514 8.1962 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324277035.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:05:45 Heat of formation + Delta-G solvation = -2.655485 kcal Electronic energy + Delta-G solvation = -28742.158752 eV Core-core repulsion = 25054.616404 eV Total energy + Delta-G solvation = -3687.542349 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.65206 -40.47584 -38.36056 -36.97061 -36.08965 -33.51281 -33.44867 -32.68538 -31.12227 -30.21282 -29.80730 -26.76023 -25.60094 -24.67789 -23.93987 -23.28676 -22.86342 -21.94696 -20.64682 -19.98831 -19.17098 -17.86273 -17.54119 -16.85196 -16.81990 -16.50585 -16.15621 -15.58560 -15.26420 -15.16645 -15.06065 -14.80742 -14.76099 -14.68643 -14.24755 -14.00424 -13.85679 -13.65768 -13.47949 -13.24877 -13.14383 -13.01754 -12.87485 -12.66230 -12.44638 -12.37797 -12.31592 -12.01781 -11.77374 -11.74612 -11.63465 -11.50810 -11.37428 -11.22573 -10.89406 -10.47202 -9.78984 -9.55379 -9.44465 -8.77975 -7.79966 -5.07788 -0.02197 0.38357 1.38088 1.43999 1.49779 1.98798 2.07912 2.57783 2.83061 3.45843 3.50485 3.62366 3.71607 3.74269 3.86910 3.98084 4.01474 4.04788 4.17144 4.23335 4.26386 4.29237 4.41136 4.48422 4.53428 4.62784 4.64145 4.67360 4.80305 4.81332 4.89074 4.90603 4.92471 5.00173 5.01587 5.04097 5.10901 5.14237 5.15605 5.17602 5.28911 5.39038 5.41145 5.44460 5.46717 5.48610 5.62466 5.67791 6.01043 6.36308 6.67581 7.33348 7.53752 8.36458 8.66487 9.41449 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.009978 B = 0.004236 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2805.445158 B = 6609.162301 C = 8816.689857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.076 4.076 3 Si 0.969 3.031 4 H -0.274 1.274 5 H -0.294 1.294 6 H -0.284 1.284 7 C -0.249 4.249 8 H 0.062 0.938 9 N -0.737 5.737 10 C 0.142 3.858 11 C 0.130 3.870 12 H 0.045 0.955 13 C -0.113 4.113 14 C -0.118 4.118 15 C 0.083 3.917 16 N -0.612 5.612 17 C 0.534 3.466 18 O -0.522 6.522 19 C -0.140 4.140 20 C -0.105 4.105 21 C -0.122 4.122 22 C -0.059 4.059 23 C -0.091 4.091 24 C -0.090 4.090 25 C -0.085 4.085 26 C -0.113 4.113 27 C -0.121 4.121 28 C -0.079 4.079 29 H 0.242 0.758 30 H 0.390 0.610 31 H 0.010 0.990 32 H 0.024 0.976 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.121 0.879 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.096 0.904 39 H 0.159 0.841 40 H 0.165 0.835 41 H 0.096 0.904 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.071 0.929 45 H 0.080 0.920 46 H 0.092 0.908 47 H 0.055 0.945 48 H 0.097 0.903 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.546 -21.358 17.284 27.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.269 4.269 3 Si 0.798 3.202 4 H -0.200 1.200 5 H -0.221 1.221 6 H -0.210 1.210 7 C -0.381 4.381 8 H 0.080 0.920 9 N -0.390 5.390 10 C 0.014 3.986 11 C 0.026 3.974 12 H 0.063 0.937 13 C -0.152 4.152 14 C -0.155 4.155 15 C -0.038 4.038 16 N -0.347 5.347 17 C 0.323 3.677 18 O -0.397 6.397 19 C -0.143 4.143 20 C -0.123 4.123 21 C -0.140 4.140 22 C -0.060 4.060 23 C -0.091 4.091 24 C -0.109 4.109 25 C -0.122 4.122 26 C -0.150 4.150 27 C -0.159 4.159 28 C -0.115 4.115 29 H 0.050 0.950 30 H 0.233 0.767 31 H 0.028 0.972 32 H 0.041 0.959 33 H 0.116 0.884 34 H 0.107 0.893 35 H 0.139 0.861 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.114 0.886 39 H 0.176 0.824 40 H 0.182 0.818 41 H 0.114 0.886 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.090 0.910 45 H 0.099 0.901 46 H 0.110 0.890 47 H 0.074 0.926 48 H 0.115 0.885 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.618 -20.632 16.990 26.971 hybrid contribution 0.097 1.937 -0.857 2.120 sum -3.521 -18.695 16.133 24.944 Atomic orbital electron populations 1.69989 1.06535 1.24795 1.58978 1.25564 0.96297 1.00783 1.04267 0.85294 0.77202 0.79696 0.78035 1.20009 1.22070 1.21015 1.19550 0.90754 0.86367 1.41454 0.91969 1.43355 1.07359 1.00140 1.88157 1.21185 0.93972 0.86471 0.97020 1.21889 0.95537 0.96848 0.83150 0.93655 1.22678 1.00390 0.90661 1.01442 1.22881 1.02601 0.96935 0.93133 1.22993 1.00904 0.82432 0.97451 1.48425 1.54207 1.18431 1.13662 1.18798 0.78996 0.82846 0.87097 1.90869 1.56737 1.27024 1.65057 1.19822 0.99059 1.01736 0.93703 1.21995 1.00071 0.96363 0.93857 1.21506 0.96459 1.00486 0.95508 1.20243 0.94541 0.94333 0.96856 1.19761 0.98434 0.98701 0.92175 1.21238 0.95817 0.97325 0.96567 1.20543 0.93942 0.98265 0.99497 1.21538 0.98025 1.01630 0.93852 1.21586 0.96732 0.98511 0.99021 1.20616 1.00609 1.00119 0.90168 0.94955 0.76690 0.97229 0.95891 0.88412 0.89318 0.86084 0.90156 0.89981 0.88605 0.82410 0.81758 0.88623 0.91361 0.91356 0.90990 0.90144 0.88975 0.92590 0.88467 0.88783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -66.83 13.06 21.65 0.28 -66.54 16 2 C -0.08 -5.02 5.50 84.86 0.47 -4.55 16 3 Si 0.97 51.84 29.55 68.60 2.03 53.86 16 4 H -0.27 -13.86 7.11 99.48 0.71 -13.15 16 5 H -0.29 -15.68 7.11 99.48 0.71 -14.97 16 6 H -0.28 -14.70 7.11 99.48 0.71 -14.00 16 7 C -0.25 -16.11 9.99 84.03 0.84 -15.27 16 8 H 0.06 3.86 7.83 -2.91 -0.02 3.83 16 9 N -0.74 -44.53 4.18 -343.45 -1.44 -45.97 16 10 C 0.14 6.57 5.63 86.38 0.49 7.05 16 11 C 0.13 4.72 3.11 45.34 0.14 4.86 16 12 H 0.05 1.87 8.14 -2.39 -0.02 1.86 16 13 C -0.11 -2.51 6.47 31.89 0.21 -2.30 16 14 C -0.12 -1.87 7.11 32.09 0.23 -1.64 16 15 C 0.08 1.79 5.01 86.86 0.43 2.23 16 16 N -0.61 -21.67 3.06 -791.41 -2.43 -24.09 16 17 C 0.53 23.73 7.48 86.79 0.65 24.38 16 18 O -0.52 -30.29 12.54 -3.88 -0.05 -30.34 16 19 C -0.14 -5.09 5.72 -20.16 -0.12 -5.21 16 20 C -0.10 -2.71 7.96 22.46 0.18 -2.53 16 21 C -0.12 -2.46 9.59 22.33 0.21 -2.24 16 22 C -0.06 -1.28 5.75 -19.77 -0.11 -1.40 16 23 C -0.09 -2.53 5.73 -19.87 -0.11 -2.65 16 24 C -0.09 -3.32 9.15 22.62 0.21 -3.11 16 25 C -0.09 -2.01 5.66 29.75 0.17 -1.84 16 26 C -0.11 -1.79 5.98 30.61 0.18 -1.61 16 27 C -0.12 -1.63 5.97 30.61 0.18 -1.45 16 28 C -0.08 -1.05 5.66 29.75 0.17 -0.88 16 29 H 0.24 16.41 8.31 -92.71 -0.77 15.64 16 30 H 0.39 25.58 4.68 -99.44 -0.47 25.11 16 31 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.02 1.04 8.12 -2.39 -0.02 1.02 16 33 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.09 1.81 7.85 -2.39 -0.02 1.79 16 35 H 0.12 1.06 8.14 -2.38 -0.02 1.04 16 36 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.08 1.54 7.32 -2.38 -0.02 1.52 16 38 H 0.10 1.78 6.07 -2.39 -0.01 1.76 16 39 H 0.16 3.29 4.42 -2.91 -0.01 3.28 16 40 H 0.16 1.94 8.05 -2.91 -0.02 1.91 16 41 H 0.10 4.11 7.83 -2.91 -0.02 4.09 16 42 H 0.07 1.66 8.12 -2.39 -0.02 1.64 16 43 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.07 1.06 8.10 -2.39 -0.02 1.04 16 45 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 46 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 47 H 0.06 0.89 8.10 -2.39 -0.02 0.87 16 48 H 0.10 0.97 8.14 -2.38 -0.02 0.95 16 49 H 0.09 0.96 8.12 -2.39 -0.02 0.94 16 Total: -1.00 -91.37 377.41 3.29 -88.07 By element: Atomic # 1 Polarization: 32.70 SS G_CDS: 0.48 Total: 33.18 kcal Atomic # 6 Polarization: -12.59 SS G_CDS: 4.41 Total: -8.17 kcal Atomic # 7 Polarization: -133.03 SS G_CDS: -3.58 Total: -136.61 kcal Atomic # 8 Polarization: -30.29 SS G_CDS: -0.05 Total: -30.34 kcal Atomic # 14 Polarization: 51.84 SS G_CDS: 2.03 Total: 53.86 kcal Total: -91.37 3.29 -88.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324277035.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.417 kcal (2) G-P(sol) polarization free energy of solvation -91.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds