Wall clock time and date at job start Tue Mar 31 2020 14:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.47147 * 2 1 4 4 C 1.50693 * 109.47504 * 240.00035 * 2 1 3 5 5 H 1.08001 * 120.00171 * 240.00283 * 4 2 1 6 6 C 1.37875 * 120.00443 * 59.99660 * 4 2 1 7 7 N 1.31514 * 119.99480 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00574 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47042 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.47152 * 119.99887 * 8 6 4 11 11 H 1.48493 * 109.47284 * 240.00258 * 8 6 4 12 12 C 1.52999 * 109.46946 * 119.99657 * 2 1 3 13 13 N 1.46505 * 109.47192 * 300.00266 * 12 2 1 14 14 C 1.34777 * 119.99724 * 180.02562 * 13 12 2 15 15 O 1.21343 * 120.00423 * 359.97438 * 14 13 12 16 16 C 1.49452 * 119.99621 * 180.02562 * 14 13 12 17 17 O 1.21343 * 119.99953 * 359.97438 * 16 14 13 18 18 N 1.34777 * 119.99622 * 179.97438 * 16 14 13 19 19 C 1.46499 * 119.99665 * 179.72283 * 18 16 14 20 20 C 1.53004 * 109.47198 * 180.27868 * 19 18 16 21 21 H 1.09000 * 110.86003 * 56.18857 * 20 19 18 22 22 C 1.54916 * 110.97895 * 179.97438 * 20 19 18 23 23 O 1.44190 * 103.07239 * 153.66957 * 22 20 19 24 24 C 1.43371 * 107.29226 * 338.56154 * 23 22 20 25 25 C 1.53001 * 109.62958 * 119.21140 * 24 23 22 26 26 C 1.53001 * 109.63502 * 239.45241 * 24 23 22 27 27 O 1.43750 * 108.78870 * 359.33473 * 24 23 22 28 28 H 1.08990 * 109.46922 * 300.00299 * 1 2 3 29 29 H 1.08994 * 109.46561 * 60.00326 * 1 2 3 30 30 H 1.08998 * 109.46368 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47357 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.46873 * 299.99978 * 3 2 1 33 33 H 1.09003 * 109.47092 * 59.99577 * 3 2 1 34 34 H 0.97009 * 119.99998 * 179.97438 * 7 6 4 35 35 H 1.08995 * 109.47276 * 180.02562 * 12 2 1 36 36 H 1.09001 * 109.47054 * 60.00176 * 12 2 1 37 37 H 0.97000 * 119.99792 * 359.97438 * 13 12 2 38 38 H 0.97001 * 120.00485 * 0.02562 * 18 16 14 39 39 H 1.09009 * 109.47454 * 300.27637 * 19 18 16 40 40 H 1.08998 * 109.47492 * 60.27932 * 19 18 16 41 41 H 1.09001 * 110.69764 * 272.06688 * 22 20 19 42 42 H 1.09001 * 110.69215 * 35.10126 * 22 20 19 43 43 H 1.09006 * 109.47009 * 61.45544 * 25 24 23 44 44 H 1.08992 * 109.47029 * 181.45470 * 25 24 23 45 45 H 1.09000 * 109.47088 * 301.45839 * 25 24 23 46 46 H 1.09000 * 109.46972 * 58.54478 * 26 24 23 47 47 H 1.08992 * 109.46846 * 178.54440 * 26 24 23 48 48 H 1.09001 * 109.47027 * 298.55414 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0325 -0.7104 -1.2304 5 1 2.6534 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9437 0.8301 -2.6034 8 14 2.3216 -1.1203 -4.0079 9 1 3.1458 -2.2877 -3.6037 10 1 1.1664 -1.5868 -4.8160 11 1 3.1468 -0.1874 -4.8164 12 6 2.0400 -0.7212 1.2493 13 7 1.5516 -0.0305 2.4455 14 6 1.8776 -0.4907 3.6696 15 8 2.5753 -1.4772 3.7810 16 6 1.3789 0.2136 4.8898 17 8 0.6809 1.1998 4.7783 18 7 1.7045 -0.2469 6.1139 19 6 1.2206 0.4469 7.3100 20 6 1.7353 -0.2709 8.5593 21 1 2.8228 -0.3432 8.5451 22 6 1.2437 0.4358 9.8472 23 8 1.2381 -0.6276 10.8209 24 6 1.1773 -1.8653 10.0999 25 6 2.4185 -2.7036 10.4121 26 6 -0.0777 -2.6383 10.5104 27 8 1.1294 -1.5791 8.6920 28 1 -0.3633 0.5138 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 0.7096 1.1617 -3.4845 35 1 3.1300 -0.7208 1.2496 36 1 1.6767 -1.7488 1.2493 37 1 0.9942 0.7583 2.3564 38 1 2.2628 -1.0351 6.2030 39 1 1.5840 1.4747 7.3059 40 1 0.1307 0.4470 7.3141 41 1 1.9359 1.2245 10.1421 42 1 0.2405 0.8383 9.7067 43 1 2.4446 -2.9313 11.4778 44 1 2.3823 -3.6324 9.8429 45 1 3.3131 -2.1442 10.1382 46 1 -0.9605 -2.0324 10.3064 47 1 -0.1348 -3.5665 9.9419 48 1 -0.0319 -2.8664 11.5753 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325546747.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:35 Heat of formation + Delta-G solvation = -167.451109 kcal Electronic energy + Delta-G solvation = -28392.236929 eV Core-core repulsion = 24254.406491 eV Total energy + Delta-G solvation = -4137.830438 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.18484 -40.33591 -38.39632 -36.50364 -35.95541 -35.04980 -33.49674 -33.05551 -30.89687 -30.17889 -27.87095 -26.96586 -25.78646 -25.72876 -25.16079 -23.18944 -22.18886 -21.62364 -20.18337 -19.02489 -18.33647 -18.04647 -16.81111 -16.68966 -16.08132 -15.86025 -15.73845 -15.31452 -15.10227 -14.84903 -14.56436 -14.29396 -14.23532 -13.70500 -13.47856 -13.17533 -13.05926 -12.93885 -12.81904 -12.63409 -12.57088 -12.44832 -12.22966 -12.13900 -11.82454 -11.48079 -11.40888 -11.19476 -10.89989 -10.67903 -10.66463 -10.40940 -10.20747 -10.12251 -9.66034 -9.56529 -9.43077 -9.25005 -8.80077 -8.61144 -8.38118 -6.03374 -4.14004 1.62513 2.45457 2.81266 3.26538 3.35258 3.39274 3.41344 3.46022 3.77411 4.06809 4.21741 4.30835 4.38820 4.48688 4.49003 4.74620 4.79624 4.94132 5.03054 5.15308 5.19118 5.23371 5.27628 5.30568 5.39861 5.50353 5.66736 5.74870 6.02207 6.10660 6.22984 6.46344 6.62229 6.63401 6.81369 6.84475 6.93204 6.99785 7.04398 7.32604 7.54506 7.64484 7.69487 7.94023 7.99486 8.11887 8.31364 8.40380 8.86456 9.51926 10.98063 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.031302 B = 0.002016 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.309167 B =13882.741044 C =14277.887796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.055 3.945 3 C -0.133 4.133 4 C -0.506 4.506 5 H 0.059 0.941 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.894 3.106 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.128 3.872 13 N -0.680 5.680 14 C 0.496 3.504 15 O -0.534 6.534 16 C 0.510 3.490 17 O -0.520 6.520 18 N -0.703 5.703 19 C 0.128 3.872 20 C 0.033 3.967 21 H 0.095 0.905 22 C 0.031 3.969 23 O -0.377 6.377 24 C 0.249 3.751 25 C -0.172 4.172 26 C -0.155 4.155 27 O -0.362 6.362 28 H 0.008 0.992 29 H 0.087 0.913 30 H 0.028 0.972 31 H 0.027 0.973 32 H 0.087 0.913 33 H 0.008 0.992 34 H 0.260 0.740 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.411 0.589 38 H 0.416 0.584 39 H 0.092 0.908 40 H 0.085 0.915 41 H 0.105 0.895 42 H 0.082 0.918 43 H 0.074 0.926 44 H 0.078 0.922 45 H 0.063 0.937 46 H 0.067 0.933 47 H 0.076 0.924 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.392 -1.393 25.767 25.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.054 3.946 3 C -0.191 4.191 4 C -0.544 4.544 5 H 0.077 0.923 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.722 3.278 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.006 3.994 13 N -0.331 5.331 14 C 0.276 3.724 15 O -0.412 6.412 16 C 0.291 3.709 17 O -0.395 6.395 18 N -0.357 5.357 19 C 0.004 3.996 20 C -0.025 4.025 21 H 0.113 0.887 22 C -0.046 4.046 23 O -0.298 6.298 24 C 0.172 3.828 25 C -0.229 4.229 26 C -0.212 4.212 27 O -0.283 6.283 28 H 0.027 0.973 29 H 0.106 0.894 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.106 0.894 33 H 0.027 0.973 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.248 0.752 38 H 0.253 0.747 39 H 0.110 0.890 40 H 0.103 0.897 41 H 0.123 0.877 42 H 0.101 0.899 43 H 0.093 0.907 44 H 0.097 0.903 45 H 0.082 0.918 46 H 0.086 0.914 47 H 0.095 0.905 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.211 -1.396 25.642 25.680 hybrid contribution 0.404 -0.366 -0.863 1.021 sum 0.615 -1.762 24.778 24.848 Atomic orbital electron populations 1.21856 0.97575 0.99306 1.00402 1.18396 0.93002 0.92885 0.90293 1.21856 0.98609 0.98248 1.00399 1.20981 1.31576 1.12143 0.89741 0.92295 1.24891 0.94851 0.94934 0.98907 1.69820 1.36565 1.22683 1.23187 0.86496 0.78620 0.79708 0.82935 1.19762 1.21061 1.21065 1.21951 0.98548 0.96061 0.82821 1.46221 1.50409 1.31385 1.05122 1.19896 0.82456 0.85233 0.84863 1.90729 1.37898 1.25873 1.86723 1.20496 0.80921 0.84620 0.84898 1.90757 1.36452 1.25488 1.86838 1.45591 1.53363 1.32348 1.04443 1.21392 1.00903 0.95852 0.81429 1.24222 0.99132 0.83408 0.95766 0.88679 1.24102 1.02884 0.91128 0.86446 1.88908 1.95488 1.14569 1.30874 1.23431 0.96243 0.86103 0.76974 1.22386 0.96879 1.00557 1.03093 1.22076 0.96126 1.00628 1.02365 1.89355 1.81112 1.34076 1.23709 0.97259 0.89431 0.95331 0.95345 0.89429 0.97271 0.92998 0.91978 0.91967 0.75180 0.74715 0.88961 0.89724 0.87688 0.89944 0.90678 0.90302 0.91765 0.91372 0.90459 0.90458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 8.08 37.16 0.30 -2.75 16 2 C 0.05 1.27 0.50 -155.66 -0.08 1.19 16 3 C -0.13 -3.04 8.08 37.16 0.30 -2.74 16 4 C -0.51 -13.08 8.01 -34.44 -0.28 -13.36 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.71 5.15 -17.82 -0.09 1.62 16 7 N -0.88 -23.53 9.35 55.43 0.52 -23.01 16 8 Si 0.89 20.57 29.54 -169.99 -5.02 15.55 16 9 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 C 0.13 2.67 4.50 -4.04 -0.02 2.65 16 13 N -0.68 -12.58 4.95 -60.73 -0.30 -12.88 16 14 C 0.50 8.68 7.89 -11.58 -0.09 8.59 16 15 O -0.53 -10.24 16.48 5.50 0.09 -10.15 16 16 C 0.51 7.69 7.89 -11.58 -0.09 7.60 16 17 O -0.52 -8.75 16.48 5.50 0.09 -8.66 16 18 N -0.70 -8.17 5.55 -60.73 -0.34 -8.50 16 19 C 0.13 1.12 5.44 -4.04 -0.02 1.10 16 20 C 0.03 0.24 3.53 -25.72 -0.09 0.15 16 21 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 22 C 0.03 0.20 7.54 38.17 0.29 0.49 16 23 O -0.38 -3.24 10.87 -59.04 -0.64 -3.88 16 24 C 0.25 2.05 1.47 -26.73 -0.04 2.01 16 25 C -0.17 -1.17 9.19 37.16 0.34 -0.83 16 26 C -0.15 -1.10 9.24 37.16 0.34 -0.76 16 27 O -0.36 -3.44 10.73 -59.04 -0.63 -4.07 16 28 H 0.01 0.18 6.86 -51.93 -0.36 -0.18 16 29 H 0.09 2.20 6.07 -51.93 -0.32 1.89 16 30 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.09 2.20 6.07 -51.93 -0.32 1.88 16 33 H 0.01 0.17 6.86 -51.93 -0.36 -0.18 16 34 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 35 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.41 7.47 5.63 -40.82 -0.23 7.24 16 38 H 0.42 4.63 7.94 -40.82 -0.32 4.31 16 39 H 0.09 0.69 8.14 -51.92 -0.42 0.27 16 40 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.08 0.47 8.03 -51.93 -0.42 0.05 16 43 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 48 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 389.28 15.07 5.87 5.87 Total: -1.00 -29.70 389.28 -7.37 -37.07 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -7.77 Total: 7.70 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: 0.77 Total: 4.98 kcal Atomic # 7 Polarization: -44.28 SS G_CDS: -0.12 Total: -44.40 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: -1.09 Total: -26.76 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -29.70 -7.37 -37.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325546747.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.385 kcal (2) G-P(sol) polarization free energy of solvation -29.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds