Wall clock time and date at job start Tue Mar 31 2020 14:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.47147 * 2 1 4 4 C 1.50693 * 109.47504 * 240.00035 * 2 1 3 5 5 H 1.08001 * 120.00171 * 240.00283 * 4 2 1 6 6 C 1.37875 * 120.00443 * 59.99660 * 4 2 1 7 7 N 1.31514 * 119.99480 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00574 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47042 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.47152 * 119.99887 * 8 6 4 11 11 H 1.48493 * 109.47284 * 240.00258 * 8 6 4 12 12 C 1.52999 * 109.46946 * 119.99657 * 2 1 3 13 13 N 1.46505 * 109.47192 * 300.00266 * 12 2 1 14 14 C 1.34777 * 119.99724 * 180.02562 * 13 12 2 15 15 O 1.21343 * 120.00423 * 359.97438 * 14 13 12 16 16 C 1.49452 * 119.99621 * 180.02562 * 14 13 12 17 17 O 1.21343 * 119.99953 * 359.97438 * 16 14 13 18 18 N 1.34777 * 119.99622 * 179.97438 * 16 14 13 19 19 C 1.46499 * 119.99665 * 179.72283 * 18 16 14 20 20 C 1.53004 * 109.47198 * 180.27868 * 19 18 16 21 21 H 1.09000 * 110.86003 * 56.18857 * 20 19 18 22 22 C 1.54916 * 110.97895 * 179.97438 * 20 19 18 23 23 O 1.44190 * 103.07239 * 153.66957 * 22 20 19 24 24 C 1.43371 * 107.29226 * 338.56154 * 23 22 20 25 25 C 1.53001 * 109.62958 * 119.21140 * 24 23 22 26 26 C 1.53001 * 109.63502 * 239.45241 * 24 23 22 27 27 O 1.43750 * 108.78870 * 359.33473 * 24 23 22 28 28 H 1.08990 * 109.46922 * 300.00299 * 1 2 3 29 29 H 1.08994 * 109.46561 * 60.00326 * 1 2 3 30 30 H 1.08998 * 109.46368 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47357 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.46873 * 299.99978 * 3 2 1 33 33 H 1.09003 * 109.47092 * 59.99577 * 3 2 1 34 34 H 0.97009 * 119.99998 * 179.97438 * 7 6 4 35 35 H 1.08995 * 109.47276 * 180.02562 * 12 2 1 36 36 H 1.09001 * 109.47054 * 60.00176 * 12 2 1 37 37 H 0.97000 * 119.99792 * 359.97438 * 13 12 2 38 38 H 0.97001 * 120.00485 * 0.02562 * 18 16 14 39 39 H 1.09009 * 109.47454 * 300.27637 * 19 18 16 40 40 H 1.08998 * 109.47492 * 60.27932 * 19 18 16 41 41 H 1.09001 * 110.69764 * 272.06688 * 22 20 19 42 42 H 1.09001 * 110.69215 * 35.10126 * 22 20 19 43 43 H 1.09006 * 109.47009 * 61.45544 * 25 24 23 44 44 H 1.08992 * 109.47029 * 181.45470 * 25 24 23 45 45 H 1.09000 * 109.47088 * 301.45839 * 25 24 23 46 46 H 1.09000 * 109.46972 * 58.54478 * 26 24 23 47 47 H 1.08992 * 109.46846 * 178.54440 * 26 24 23 48 48 H 1.09001 * 109.47027 * 298.55414 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0325 -0.7104 -1.2304 5 1 2.6534 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9437 0.8301 -2.6034 8 14 2.3216 -1.1203 -4.0079 9 1 3.1458 -2.2877 -3.6037 10 1 1.1664 -1.5868 -4.8160 11 1 3.1468 -0.1874 -4.8164 12 6 2.0400 -0.7212 1.2493 13 7 1.5516 -0.0305 2.4455 14 6 1.8776 -0.4907 3.6696 15 8 2.5753 -1.4772 3.7810 16 6 1.3789 0.2136 4.8898 17 8 0.6809 1.1998 4.7783 18 7 1.7045 -0.2469 6.1139 19 6 1.2206 0.4469 7.3100 20 6 1.7353 -0.2709 8.5593 21 1 2.8228 -0.3432 8.5451 22 6 1.2437 0.4358 9.8472 23 8 1.2381 -0.6276 10.8209 24 6 1.1773 -1.8653 10.0999 25 6 2.4185 -2.7036 10.4121 26 6 -0.0777 -2.6383 10.5104 27 8 1.1294 -1.5791 8.6920 28 1 -0.3633 0.5138 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 0.7096 1.1617 -3.4845 35 1 3.1300 -0.7208 1.2496 36 1 1.6767 -1.7488 1.2493 37 1 0.9942 0.7583 2.3564 38 1 2.2628 -1.0351 6.2030 39 1 1.5840 1.4747 7.3059 40 1 0.1307 0.4470 7.3141 41 1 1.9359 1.2245 10.1421 42 1 0.2405 0.8383 9.7067 43 1 2.4446 -2.9313 11.4778 44 1 2.3823 -3.6324 9.8429 45 1 3.3131 -2.1442 10.1382 46 1 -0.9605 -2.0324 10.3064 47 1 -0.1348 -3.5665 9.9419 48 1 -0.0319 -2.8664 11.5753 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325546747.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:34 Heat of formation + Delta-G solvation = -188.265010 kcal Electronic energy + Delta-G solvation = -28393.139487 eV Core-core repulsion = 24254.406491 eV Total energy + Delta-G solvation = -4138.732996 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.91415 -41.50193 -39.75038 -38.19831 -36.81123 -35.81184 -35.01828 -33.87029 -32.74483 -30.89563 -28.40674 -28.16091 -27.58544 -27.34109 -26.68773 -24.38298 -22.94507 -22.22479 -21.45324 -20.71152 -19.73613 -18.65872 -18.01931 -17.70397 -17.43526 -17.05778 -16.85702 -16.54432 -16.36411 -15.93250 -15.79615 -15.45261 -15.03805 -14.81306 -14.74796 -14.53878 -14.22009 -14.04330 -13.77611 -13.66406 -13.31194 -13.21272 -13.14754 -13.13868 -13.06253 -12.82351 -12.71044 -12.68141 -12.56002 -12.34659 -12.27993 -12.11821 -11.50749 -11.30480 -11.22495 -10.77804 -10.69013 -10.64477 -10.42658 -10.40210 -10.12584 -8.01517 -6.17748 0.32928 1.29381 1.43197 1.47640 1.56773 2.12828 2.23969 2.45197 2.66055 2.87611 3.22401 3.35653 3.46034 3.66874 3.79043 3.92792 3.93831 4.24049 4.34590 4.36210 4.47315 4.51862 4.61128 4.66116 4.68028 4.74424 4.77395 4.83253 4.92612 4.95040 5.04176 5.04456 5.06233 5.15408 5.17458 5.21634 5.22236 5.48194 5.64997 5.68039 5.89039 6.07206 6.11550 6.19122 6.35749 6.41493 6.69897 6.86335 6.95298 7.50173 8.97896 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.031302 B = 0.002016 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.309167 B =13882.741044 C =14277.887796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.049 3.951 3 C -0.123 4.123 4 C -0.524 4.524 5 H 0.051 0.949 6 C 0.025 3.975 7 N -0.901 5.901 8 Si 0.949 3.051 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.283 1.283 12 C 0.143 3.857 13 N -0.681 5.681 14 C 0.497 3.503 15 O -0.551 6.551 16 C 0.516 3.484 17 O -0.539 6.539 18 N -0.686 5.686 19 C 0.126 3.874 20 C 0.035 3.965 21 H 0.108 0.892 22 C 0.030 3.970 23 O -0.391 6.391 24 C 0.241 3.759 25 C -0.170 4.170 26 C -0.155 4.155 27 O -0.383 6.383 28 H 0.030 0.970 29 H 0.063 0.937 30 H 0.023 0.977 31 H 0.024 0.976 32 H 0.063 0.937 33 H 0.030 0.970 34 H 0.260 0.740 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.414 0.586 38 H 0.420 0.580 39 H 0.111 0.889 40 H 0.080 0.920 41 H 0.130 0.870 42 H 0.087 0.913 43 H 0.083 0.917 44 H 0.079 0.921 45 H 0.064 0.936 46 H 0.060 0.940 47 H 0.078 0.922 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.779 -1.272 27.362 27.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.048 3.952 3 C -0.181 4.181 4 C -0.562 4.562 5 H 0.069 0.931 6 C -0.175 4.175 7 N -0.540 5.540 8 Si 0.775 3.225 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.209 1.209 12 C 0.020 3.980 13 N -0.333 5.333 14 C 0.278 3.722 15 O -0.430 6.430 16 C 0.296 3.704 17 O -0.416 6.416 18 N -0.340 5.340 19 C 0.004 3.996 20 C -0.022 4.022 21 H 0.126 0.874 22 C -0.046 4.046 23 O -0.312 6.312 24 C 0.165 3.835 25 C -0.227 4.227 26 C -0.212 4.212 27 O -0.305 6.305 28 H 0.049 0.951 29 H 0.082 0.918 30 H 0.042 0.958 31 H 0.043 0.957 32 H 0.082 0.918 33 H 0.049 0.951 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.251 0.749 38 H 0.257 0.743 39 H 0.129 0.871 40 H 0.098 0.902 41 H 0.147 0.853 42 H 0.105 0.895 43 H 0.102 0.898 44 H 0.098 0.902 45 H 0.083 0.917 46 H 0.079 0.921 47 H 0.097 0.903 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.604 -1.281 27.280 27.316 hybrid contribution 0.282 -0.417 -1.283 1.378 sum 0.886 -1.698 25.997 26.067 Atomic orbital electron populations 1.21707 0.97357 0.98886 1.00239 1.18400 0.93159 0.93100 0.90519 1.21702 0.98249 0.97930 1.00250 1.21258 1.31638 1.12193 0.91124 0.93073 1.25505 0.95175 0.95616 1.01178 1.69934 1.37073 1.23393 1.23557 0.85650 0.78028 0.78715 0.80059 1.19663 1.20954 1.20889 1.21552 0.97965 0.95463 0.82999 1.46064 1.50754 1.31452 1.04983 1.20323 0.81720 0.84893 0.85302 1.90719 1.38567 1.26678 1.87078 1.19937 0.81088 0.84343 0.84982 1.90758 1.37590 1.26251 1.86987 1.45598 1.52141 1.32038 1.04203 1.21613 1.00731 0.96706 0.80583 1.24277 0.99688 0.82803 0.95433 0.87391 1.24267 1.03899 0.91012 0.85452 1.88893 1.95618 1.15109 1.31610 1.23616 0.97106 0.86321 0.76460 1.22377 0.96283 1.00347 1.03707 1.22099 0.95541 1.00450 1.03139 1.89334 1.81520 1.35032 1.24591 0.95114 0.91780 0.95815 0.95705 0.91808 0.95072 0.93067 0.92637 0.92813 0.74855 0.74293 0.87093 0.90166 0.85257 0.89473 0.89784 0.90221 0.91712 0.92068 0.90319 0.89331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.64 8.08 71.98 0.58 -5.06 16 2 C 0.05 2.26 0.50 -52.93 -0.03 2.23 16 3 C -0.12 -5.57 8.08 71.98 0.58 -4.99 16 4 C -0.52 -27.18 8.01 25.60 0.21 -26.97 16 5 H 0.05 2.67 7.74 -2.91 -0.02 2.65 16 6 C 0.02 1.30 5.15 84.65 0.44 1.74 16 7 N -0.90 -48.19 9.35 21.45 0.20 -47.99 16 8 Si 0.95 42.24 29.54 68.60 2.03 44.27 16 9 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 10 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 11 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 12 C 0.14 5.92 4.50 86.38 0.39 6.31 16 13 N -0.68 -24.55 4.95 -464.41 -2.30 -26.85 16 14 C 0.50 16.85 7.89 87.27 0.69 17.54 16 15 O -0.55 -20.64 16.48 -3.22 -0.05 -20.69 16 16 C 0.52 14.78 7.89 87.27 0.69 15.46 16 17 O -0.54 -17.23 16.48 -3.23 -0.05 -17.29 16 18 N -0.69 -14.68 5.55 -464.40 -2.58 -17.26 16 19 C 0.13 1.93 5.44 86.38 0.47 2.40 16 20 C 0.04 0.45 3.53 31.25 0.11 0.56 16 21 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 22 C 0.03 0.31 7.54 72.64 0.55 0.86 16 23 O -0.39 -5.99 10.87 -126.22 -1.37 -7.36 16 24 C 0.24 3.62 1.47 30.60 0.04 3.67 16 25 C -0.17 -2.06 9.19 71.98 0.66 -1.40 16 26 C -0.15 -2.04 9.24 71.98 0.66 -1.38 16 27 O -0.38 -6.73 10.73 -126.22 -1.35 -8.08 16 28 H 0.03 1.22 6.86 -2.39 -0.02 1.20 16 29 H 0.06 3.23 6.07 -2.39 -0.01 3.22 16 30 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.06 3.20 6.07 -2.39 -0.01 3.19 16 33 H 0.03 1.22 6.86 -2.39 -0.02 1.21 16 34 H 0.26 13.37 8.31 -92.70 -0.77 12.60 16 35 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 36 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 37 H 0.41 14.50 5.63 -92.71 -0.52 13.98 16 38 H 0.42 8.60 7.94 -92.71 -0.74 7.86 16 39 H 0.11 1.35 8.14 -2.38 -0.02 1.33 16 40 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.13 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.09 0.81 8.03 -2.39 -0.02 0.79 16 43 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 44 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 47 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 48 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -62.32 389.28 0.28 -62.04 By element: Atomic # 1 Polarization: 28.52 SS G_CDS: -0.28 Total: 28.24 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: 6.04 Total: 10.97 kcal Atomic # 7 Polarization: -87.43 SS G_CDS: -4.68 Total: -92.10 kcal Atomic # 8 Polarization: -50.58 SS G_CDS: -2.83 Total: -53.41 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Total: -62.32 0.28 -62.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325546747.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.225 kcal (2) G-P(sol) polarization free energy of solvation -62.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds