Wall clock time and date at job start Tue Mar 31 2020 16:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34231 * 117.00126 * 2 1 4 4 O 1.20833 * 119.99644 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00640 * 179.71955 * 3 2 1 6 6 C 1.53002 * 109.53695 * 60.10017 * 5 3 2 7 7 N 1.46501 * 109.47196 * 299.99813 * 6 5 3 8 8 C 1.34778 * 119.99589 * 180.02562 * 7 6 5 9 9 O 1.21283 * 120.00607 * 0.02562 * 8 7 6 10 10 C 1.50704 * 119.99772 * 180.02562 * 8 7 6 11 11 H 1.09008 * 109.46725 * 40.00037 * 10 8 7 12 12 N 1.46897 * 109.47436 * 159.99733 * 10 8 7 13 13 C 1.53002 * 109.47355 * 280.00272 * 10 8 7 14 14 C 1.53000 * 109.47097 * 174.99823 * 13 10 8 15 15 C 1.50700 * 109.46735 * 179.97438 * 14 13 10 16 16 H 1.07998 * 119.99959 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99569 * 180.02562 * 15 14 13 18 18 N 1.31507 * 120.00257 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99615 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47353 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47227 * 120.00019 * 19 17 15 22 22 H 1.48501 * 109.46881 * 239.99876 * 19 17 15 23 23 C 1.53180 * 109.54643 * 299.83888 * 5 3 2 24 24 C 1.53093 * 109.15817 * 297.10970 * 23 5 3 25 25 O 1.42903 * 109.41280 * 302.39015 * 24 23 5 26 26 C 1.42901 * 114.10015 * 61.16349 * 25 24 23 27 27 C 1.53092 * 109.41096 * 298.84025 * 26 25 24 28 28 H 1.08997 * 109.47515 * 60.00401 * 1 2 3 29 29 H 1.09007 * 109.46891 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47488 * 299.99586 * 1 2 3 31 31 H 1.08993 * 109.47453 * 60.00649 * 6 5 3 32 32 H 1.09006 * 109.47255 * 180.02562 * 6 5 3 33 33 H 0.96992 * 120.00401 * 0.02562 * 7 6 5 34 34 H 1.00908 * 110.99953 * 296.04991 * 12 10 8 35 35 H 1.00900 * 111.00127 * 59.99885 * 12 10 8 36 36 H 1.09000 * 109.46397 * 294.99624 * 13 10 8 37 37 H 1.08994 * 109.47009 * 54.99694 * 13 10 8 38 38 H 1.08996 * 109.47370 * 299.99745 * 14 13 10 39 39 H 1.09004 * 109.47097 * 59.99963 * 14 13 10 40 40 H 0.96998 * 120.00115 * 179.97438 * 18 17 15 41 41 H 1.09000 * 109.52200 * 57.01062 * 23 5 3 42 42 H 1.08994 * 109.52070 * 177.20487 * 23 5 3 43 43 H 1.08997 * 109.47784 * 182.41043 * 24 23 5 44 44 H 1.09000 * 109.49375 * 62.38202 * 24 23 5 45 45 H 1.09002 * 109.48151 * 178.86157 * 26 25 24 46 46 H 1.08999 * 109.49030 * 58.82410 * 26 25 24 47 47 H 1.09004 * 109.52050 * 297.69933 * 27 26 25 48 48 H 1.09008 * 109.57489 * 177.55044 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5662 1.2750 0.0064 6 6 4.1203 0.5813 -1.2397 7 7 3.7059 -0.8239 -1.2413 8 6 4.0808 -1.6359 -2.2496 9 8 4.7616 -1.2034 -3.1554 10 6 3.6541 -3.0812 -2.2515 11 1 2.6229 -3.1560 -1.9061 12 7 3.7541 -3.6195 -3.6146 13 6 4.5639 -3.8829 -1.3185 14 6 4.0553 -5.3228 -1.2235 15 6 4.9518 -6.1125 -0.3050 16 1 5.7992 -5.6351 0.1644 17 6 4.6900 -7.4446 -0.0639 18 7 3.6578 -8.0258 -0.6350 19 14 5.8009 -8.4233 1.0753 20 1 6.8831 -7.5445 1.5868 21 1 5.0050 -8.9442 2.2156 22 1 6.3980 -9.5595 0.3284 23 6 4.1102 0.5874 1.2625 24 6 3.6120 1.3367 2.5011 25 8 4.0255 2.7026 2.4281 26 6 3.5084 3.4093 1.2989 27 6 4.0023 2.7433 0.0120 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 3.7351 1.0747 -2.1319 32 1 5.2088 0.6386 -1.2338 33 1 3.1618 -1.1699 -0.5167 34 1 3.1145 -3.1488 -4.2372 35 1 4.7012 -3.5614 -3.9578 36 1 5.5801 -3.8818 -1.7128 37 1 4.5581 -3.4294 -0.3274 38 1 3.0391 -5.3239 -0.8293 39 1 4.0611 -5.7763 -2.2147 40 1 3.4739 -8.9630 -0.4656 41 1 3.7584 -0.4438 1.2945 42 1 5.1999 0.6011 1.2422 43 1 4.0308 0.8775 3.3965 44 1 2.5239 1.2880 2.5425 45 1 3.8525 4.4432 1.3283 46 1 2.4189 3.3879 1.3242 47 1 5.0899 2.8005 -0.0335 48 1 3.5744 3.2538 -0.8509 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326046863.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:00:38 Heat of formation + Delta-G solvation = -182.645495 kcal Electronic energy + Delta-G solvation = -29783.404431 eV Core-core repulsion = 25644.915115 eV Total energy + Delta-G solvation = -4138.489316 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.77040 -39.72166 -39.16797 -36.87263 -36.25432 -35.14497 -33.23860 -32.80027 -31.56302 -30.11139 -28.59284 -27.97574 -26.20060 -24.38354 -24.17540 -23.23217 -22.47460 -20.66521 -20.21973 -19.78599 -17.84301 -17.43617 -16.99048 -16.71335 -16.44054 -16.27209 -16.20343 -15.60636 -15.45319 -15.13236 -14.98492 -14.52738 -14.29366 -14.14244 -13.76704 -13.68424 -13.44384 -12.96865 -12.81320 -12.75003 -12.54370 -12.33245 -12.21976 -12.00486 -11.73862 -11.54195 -11.28472 -11.14265 -11.02133 -10.92324 -10.69156 -10.53815 -10.50265 -10.15225 -9.85930 -9.81340 -9.38835 -9.13240 -8.99237 -8.36995 -8.22063 -5.95061 -3.97074 1.72753 2.23235 2.75321 3.12914 3.32855 3.40740 3.44327 3.51961 3.97722 4.06656 4.11518 4.41865 4.49017 4.52647 4.79311 4.80543 4.87886 4.88602 4.99971 5.03291 5.12765 5.19010 5.22339 5.24897 5.32935 5.36093 5.40712 5.46552 5.53536 5.57087 5.61133 5.65399 5.82746 6.03339 6.34724 6.43222 6.64109 6.82029 7.07603 7.26851 7.37419 7.58871 7.75315 7.78755 7.95273 8.12025 8.28696 8.47380 9.11220 9.66222 11.15846 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.013475 B = 0.003080 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.363677 B = 9087.787811 C = 9724.744590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.353 6.353 3 C 0.471 3.529 4 O -0.500 6.500 5 C -0.063 4.063 6 C 0.132 3.868 7 N -0.728 5.728 8 C 0.485 3.515 9 O -0.555 6.555 10 C 0.079 3.921 11 H 0.098 0.902 12 N -0.807 5.807 13 C -0.095 4.095 14 C 0.031 3.969 15 C -0.521 4.521 16 H 0.053 0.947 17 C 0.058 3.942 18 N -0.892 5.892 19 Si 0.888 3.112 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.285 1.285 23 C -0.148 4.148 24 C 0.058 3.942 25 O -0.380 6.380 26 C 0.050 3.950 27 C -0.133 4.133 28 H 0.063 0.937 29 H 0.108 0.892 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.408 0.592 34 H 0.333 0.667 35 H 0.348 0.652 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.013 0.987 39 H 0.035 0.965 40 H 0.259 0.741 41 H 0.092 0.908 42 H 0.096 0.904 43 H 0.105 0.895 44 H 0.046 0.954 45 H 0.098 0.902 46 H 0.072 0.928 47 H 0.092 0.908 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.758 22.339 3.017 23.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.269 6.269 3 C 0.314 3.686 4 O -0.387 6.387 5 C -0.064 4.064 6 C 0.007 3.993 7 N -0.384 5.384 8 C 0.270 3.730 9 O -0.433 6.433 10 C -0.037 4.037 11 H 0.116 0.884 12 N -0.334 5.334 13 C -0.133 4.133 14 C -0.006 4.006 15 C -0.560 4.560 16 H 0.071 0.929 17 C -0.143 4.143 18 N -0.532 5.532 19 Si 0.716 3.284 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.211 1.211 23 C -0.186 4.186 24 C -0.019 4.019 25 O -0.298 6.298 26 C -0.027 4.027 27 C -0.171 4.171 28 H 0.082 0.918 29 H 0.126 0.874 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.104 0.896 33 H 0.247 0.753 34 H 0.145 0.855 35 H 0.162 0.838 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.031 0.969 39 H 0.053 0.947 40 H 0.068 0.932 41 H 0.111 0.889 42 H 0.115 0.885 43 H 0.123 0.877 44 H 0.064 0.936 45 H 0.116 0.884 46 H 0.090 0.910 47 H 0.110 0.890 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.720 22.139 2.802 22.809 hybrid contribution 0.163 0.185 0.428 0.494 sum -4.557 22.324 3.230 23.012 Atomic orbital electron populations 1.23361 0.75525 1.04458 1.02496 1.86431 1.24045 1.32910 1.83548 1.23555 0.91410 0.81680 0.71993 1.90625 1.66960 1.36130 1.45027 1.21001 0.87576 0.99244 0.98587 1.21269 1.00664 0.82383 0.94980 1.46284 1.55526 1.09565 1.26999 1.22780 0.78991 0.90335 0.80858 1.90648 1.38743 1.77297 1.36586 1.21834 1.02313 0.86362 0.93146 0.88427 1.59007 1.12578 1.59900 1.01943 1.21656 0.97341 0.99044 0.95272 1.19019 0.95705 0.87882 0.98005 1.21315 1.11997 0.95127 1.27528 0.92923 1.24990 0.95316 0.97860 0.96176 1.69979 1.27795 1.11707 1.43692 0.86607 0.80822 0.80205 0.80756 1.19844 1.21120 1.21077 1.22380 1.03397 1.00493 0.92318 1.22626 0.98661 0.82338 0.98261 1.87953 1.73424 1.22787 1.45684 1.22829 0.99713 0.95952 0.84201 1.22113 1.02826 0.91533 1.00593 0.91796 0.87363 0.91775 0.91058 0.89616 0.75343 0.85506 0.83821 0.92826 0.92837 0.96876 0.94681 0.93167 0.88929 0.88514 0.87666 0.93561 0.88375 0.91012 0.88968 0.89494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.56 101.05 1.07 1.33 16 2 O -0.35 -3.42 8.05 -39.26 -0.32 -3.73 16 3 C 0.47 4.83 5.21 36.00 0.19 5.02 16 4 O -0.50 -5.92 13.59 -18.76 -0.25 -6.18 16 5 C -0.06 -0.56 0.51 -155.48 -0.08 -0.64 16 6 C 0.13 1.37 4.57 -4.04 -0.02 1.35 16 7 N -0.73 -8.71 4.80 -60.29 -0.29 -9.00 16 8 C 0.48 7.34 7.07 -10.98 -0.08 7.26 16 9 O -0.55 -9.86 16.25 5.55 0.09 -9.77 16 10 C 0.08 1.29 3.15 -68.86 -0.22 1.07 16 11 H 0.10 1.50 8.14 -51.92 -0.42 1.08 16 12 N -0.81 -13.31 8.44 -5.65 -0.05 -13.35 16 13 C -0.09 -1.85 4.78 -26.73 -0.13 -1.98 16 14 C 0.03 0.77 4.86 -27.88 -0.14 0.64 16 15 C -0.52 -14.46 9.11 -34.44 -0.31 -14.77 16 16 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 18 N -0.89 -26.55 13.29 55.43 0.74 -25.81 16 19 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 20 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 22 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 23 C -0.15 -1.24 4.66 -26.59 -0.12 -1.36 16 24 C 0.06 0.50 6.62 37.21 0.25 0.74 16 25 O -0.38 -3.80 10.77 -35.23 -0.38 -4.17 16 26 C 0.05 0.43 6.55 37.20 0.24 0.67 16 27 C -0.13 -1.06 4.56 -26.60 -0.12 -1.18 16 28 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 29 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.41 4.51 5.39 -40.82 -0.22 4.29 16 34 H 0.33 4.78 9.06 -39.29 -0.36 4.42 16 35 H 0.35 5.83 8.58 -39.29 -0.34 5.50 16 36 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.03 0.95 7.75 -51.93 -0.40 0.55 16 40 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 41 H 0.09 0.77 6.90 -51.93 -0.36 0.41 16 42 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.05 0.41 7.38 -51.93 -0.38 0.02 16 45 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.07 0.72 5.81 -51.93 -0.30 0.41 16 47 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.09 0.67 8.03 -51.92 -0.42 0.25 16 LS Contribution 384.48 15.07 5.79 5.79 Total: -1.00 -33.62 384.48 -7.07 -40.69 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: -7.81 Total: 9.44 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: 0.43 Total: -0.31 kcal Atomic # 7 Polarization: -48.57 SS G_CDS: 0.40 Total: -48.17 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: -0.86 Total: -23.85 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.62 -7.07 -40.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326046863.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.959 kcal (2) G-P(sol) polarization free energy of solvation -33.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds