Wall clock time and date at job start Tue Mar 31 2020 16:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34227 * 117.00361 * 2 1 4 4 O 1.20837 * 119.99721 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00228 * 180.02562 * 3 2 1 6 6 C 1.52999 * 109.47037 * 175.76876 * 5 3 2 7 7 N 1.46499 * 109.54419 * 305.85699 * 6 5 3 8 8 C 1.34777 * 120.00434 * 303.67409 * 7 6 5 9 9 O 1.21284 * 119.99502 * 354.58389 * 8 7 6 10 10 C 1.50700 * 120.00532 * 174.58564 * 8 7 6 11 11 H 1.08999 * 109.46762 * 40.00162 * 10 8 7 12 12 N 1.46903 * 109.47040 * 159.99647 * 10 8 7 13 13 C 1.52991 * 109.46959 * 280.00082 * 10 8 7 14 14 C 1.53006 * 109.47185 * 175.00001 * 13 10 8 15 15 C 1.50695 * 109.47251 * 180.02562 * 14 13 10 16 16 H 1.08001 * 120.00397 * 359.97438 * 15 14 13 17 17 C 1.37878 * 120.00321 * 179.97438 * 15 14 13 18 18 N 1.31521 * 119.99352 * 359.97438 * 17 15 14 19 19 Si 1.86790 * 120.00392 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47283 * 59.99935 * 19 17 15 21 21 H 1.48503 * 109.47411 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47282 * 299.99777 * 19 17 15 23 23 C 1.53173 * 109.54647 * 66.03359 * 6 5 3 24 24 C 1.53275 * 109.06894 * 176.85030 * 23 6 5 25 25 O 1.42912 * 109.46133 * 302.45033 * 24 23 6 26 26 C 1.42898 * 114.09737 * 61.15449 * 25 24 23 27 27 C 1.53099 * 109.41446 * 298.84211 * 26 25 24 28 28 H 1.09000 * 109.47329 * 59.98986 * 1 2 3 29 29 H 1.08992 * 109.47178 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46461 * 299.99479 * 1 2 3 31 31 H 1.09001 * 109.46807 * 55.77180 * 5 3 2 32 32 H 1.08995 * 109.47208 * 295.76805 * 5 3 2 33 33 H 0.97002 * 120.00194 * 123.67603 * 7 6 5 34 34 H 1.00897 * 110.99887 * 60.00637 * 12 10 8 35 35 H 1.00898 * 110.99313 * 183.95178 * 12 10 8 36 36 H 1.08999 * 109.47017 * 294.99432 * 13 10 8 37 37 H 1.09000 * 109.47730 * 54.99838 * 13 10 8 38 38 H 1.08999 * 109.46678 * 299.99639 * 14 13 10 39 39 H 1.09000 * 109.46919 * 59.99341 * 14 13 10 40 40 H 0.96998 * 119.99459 * 179.97438 * 18 17 15 41 41 H 1.09004 * 109.52483 * 296.84698 * 23 6 5 42 42 H 1.09007 * 109.51980 * 57.02579 * 23 6 5 43 43 H 1.08995 * 109.46166 * 182.45532 * 24 23 6 44 44 H 1.09003 * 109.46789 * 62.45068 * 24 23 6 45 45 H 1.08998 * 109.48344 * 178.85948 * 26 25 24 46 46 H 1.09000 * 109.49208 * 58.83367 * 26 25 24 47 47 H 1.08993 * 109.52288 * 297.70091 * 27 26 25 48 48 H 1.09002 * 109.57199 * 177.54294 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2094 0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.0004 2.7381 -0.1069 7 7 3.3678 3.3531 -1.2764 8 6 3.5397 2.8115 -2.4985 9 8 4.2957 1.8746 -2.6456 10 6 2.7925 3.3698 -3.6822 11 1 2.7682 4.4576 -3.6162 12 7 3.4705 2.9696 -4.9224 13 6 1.3622 2.8269 -3.6846 14 6 0.5674 3.4888 -4.8122 15 6 -0.8417 2.9545 -4.8142 16 1 -1.1404 2.2163 -4.0847 17 6 -1.7496 3.4079 -5.7476 18 7 -1.3859 4.3072 -6.6357 19 14 -3.4960 2.7451 -5.7506 20 1 -4.1414 3.0448 -4.4472 21 1 -4.2678 3.3885 -6.8441 22 1 -3.4674 1.2756 -5.9626 23 6 3.5790 3.4908 1.1588 24 6 4.0875 4.9344 1.0756 25 8 5.5072 4.9304 0.9120 26 6 5.9554 4.2802 -0.2790 27 6 5.5237 2.8116 -0.2503 28 1 -0.3634 0.5140 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5138 0.8901 31 1 3.9591 0.7167 -0.8506 32 1 3.9530 0.8475 0.9246 33 1 2.8252 4.1503 -1.1712 34 1 3.5060 1.9648 -5.0069 35 1 3.0261 3.3847 -5.7275 36 1 1.3833 1.7482 -3.8398 37 1 0.8881 3.0472 -2.7282 38 1 0.5463 4.5675 -4.6570 39 1 1.0414 3.2685 -5.7687 40 1 -2.0245 4.6260 -7.2925 41 1 2.4918 3.4893 1.2386 42 1 4.0098 3.0030 2.0332 43 1 3.8288 5.4639 1.9924 44 1 3.6249 5.4340 0.2243 45 1 7.0423 4.3384 -0.3379 46 1 5.5175 4.7709 -1.1481 47 1 5.9939 2.3102 0.5956 48 1 5.8263 2.3239 -1.1770 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329035100.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:00:50 Heat of formation + Delta-G solvation = -177.718840 kcal Electronic energy + Delta-G solvation = -30649.705758 eV Core-core repulsion = 26511.430078 eV Total energy + Delta-G solvation = -4138.275680 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.31150 -39.88333 -38.72529 -36.70331 -35.73437 -35.05253 -32.87515 -32.01044 -31.31407 -29.95014 -29.85971 -27.40067 -26.52002 -24.28749 -23.92007 -23.52152 -21.06181 -20.97159 -19.98800 -19.31115 -17.63570 -17.49538 -16.76644 -16.55558 -16.35833 -16.20846 -16.04223 -15.48046 -15.04992 -14.83721 -14.55232 -14.43134 -14.19381 -13.83574 -13.50981 -13.29463 -13.10718 -13.03264 -12.71209 -12.48753 -12.36771 -12.19122 -12.08444 -11.98511 -11.66923 -11.54110 -11.11778 -11.02281 -10.90993 -10.77933 -10.74147 -10.63765 -10.24106 -9.98308 -9.86266 -9.72765 -9.28365 -9.15995 -8.95910 -8.44299 -8.19412 -6.09016 -4.11894 2.22421 2.67870 2.86782 3.21116 3.26873 3.31864 3.33864 3.72720 4.33232 4.35943 4.38664 4.58044 4.79238 4.86873 4.96223 5.06315 5.10267 5.14853 5.18135 5.23433 5.27109 5.28920 5.38384 5.48893 5.53216 5.55955 5.57620 5.63404 5.69284 5.77911 5.85052 5.86885 5.99273 6.32030 6.43373 6.52020 6.56192 6.88281 7.02860 7.42747 7.50888 7.61703 7.70266 7.76818 7.87457 7.89209 8.30883 8.43438 8.93301 9.52580 11.01952 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.012926 B = 0.003902 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.618475 B = 7173.811311 C = 8171.401521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.363 6.363 3 C 0.463 3.537 4 O -0.494 6.494 5 C -0.129 4.129 6 C 0.197 3.803 7 N -0.717 5.717 8 C 0.529 3.471 9 O -0.539 6.539 10 C 0.074 3.926 11 H 0.094 0.906 12 N -0.830 5.830 13 C -0.135 4.135 14 C 0.026 3.974 15 C -0.522 4.522 16 H 0.052 0.948 17 C 0.059 3.941 18 N -0.893 5.893 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.286 1.286 22 H -0.277 1.277 23 C -0.167 4.167 24 C 0.063 3.937 25 O -0.384 6.384 26 C 0.065 3.935 27 C -0.164 4.164 28 H 0.069 0.931 29 H 0.098 0.902 30 H 0.061 0.939 31 H 0.127 0.873 32 H 0.109 0.891 33 H 0.404 0.596 34 H 0.344 0.656 35 H 0.354 0.646 36 H 0.050 0.950 37 H 0.059 0.941 38 H 0.018 0.982 39 H 0.017 0.983 40 H 0.262 0.738 41 H 0.101 0.899 42 H 0.082 0.918 43 H 0.096 0.904 44 H 0.052 0.948 45 H 0.094 0.906 46 H 0.054 0.946 47 H 0.078 0.922 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.305 -3.457 16.682 20.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.279 6.279 3 C 0.305 3.695 4 O -0.381 6.381 5 C -0.168 4.168 6 C 0.110 3.890 7 N -0.370 5.370 8 C 0.316 3.684 9 O -0.416 6.416 10 C -0.041 4.041 11 H 0.112 0.888 12 N -0.361 5.361 13 C -0.175 4.175 14 C -0.011 4.011 15 C -0.560 4.560 16 H 0.070 0.930 17 C -0.142 4.142 18 N -0.532 5.532 19 Si 0.720 3.280 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.203 1.203 23 C -0.205 4.205 24 C -0.014 4.014 25 O -0.303 6.303 26 C -0.011 4.011 27 C -0.203 4.203 28 H 0.088 0.912 29 H 0.117 0.883 30 H 0.079 0.921 31 H 0.144 0.856 32 H 0.127 0.873 33 H 0.240 0.760 34 H 0.158 0.842 35 H 0.169 0.831 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.036 0.964 39 H 0.035 0.965 40 H 0.072 0.928 41 H 0.119 0.881 42 H 0.101 0.899 43 H 0.114 0.886 44 H 0.071 0.929 45 H 0.112 0.888 46 H 0.072 0.928 47 H 0.097 0.903 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 12.301 -3.279 16.846 21.115 hybrid contribution -2.781 -0.567 -0.462 2.876 sum 9.520 -3.846 16.384 19.335 Atomic orbital electron populations 1.23280 0.76028 1.03607 1.02920 1.86477 1.23683 1.33618 1.84165 1.23576 0.91859 0.81529 0.72487 1.90630 1.67041 1.35881 1.44529 1.21919 0.88446 0.99487 1.06911 1.19982 0.92575 0.90327 0.86143 1.46071 1.53029 1.31955 1.05939 1.20870 0.80768 0.82806 0.83939 1.90552 1.36991 1.28938 1.85104 1.21460 0.92940 1.00628 0.89069 0.88847 1.58763 1.58101 1.15774 1.03497 1.22344 0.92632 1.00094 1.02396 1.19080 0.94242 0.95758 0.92012 1.21110 0.95802 1.23913 1.15189 0.92959 1.24999 0.98767 0.95020 0.95450 1.69941 1.35275 1.29965 1.18021 0.86659 0.84543 0.79167 0.77657 1.20243 1.21168 1.20254 1.22711 1.04190 0.97015 0.96586 1.22578 0.81473 0.95374 1.02010 1.87918 1.21629 1.77846 1.42906 1.22520 0.99835 0.91344 0.87440 1.22606 0.94083 0.98615 1.04987 0.91221 0.88309 0.92062 0.85553 0.87273 0.75995 0.84247 0.83123 0.93172 0.92235 0.96406 0.96507 0.92836 0.88091 0.89894 0.88607 0.92947 0.88802 0.92792 0.90341 0.88118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 10.56 101.05 1.07 1.47 16 2 O -0.36 -4.85 10.57 -39.25 -0.41 -5.26 16 3 C 0.46 6.25 7.45 36.01 0.27 6.51 16 4 O -0.49 -7.42 12.78 -18.76 -0.24 -7.66 16 5 C -0.13 -1.45 4.51 -27.88 -0.13 -1.58 16 6 C 0.20 2.15 0.25 -131.64 -0.03 2.12 16 7 N -0.72 -9.18 2.77 -47.44 -0.13 -9.31 16 8 C 0.53 8.24 6.42 -10.98 -0.07 8.17 16 9 O -0.54 -9.21 12.56 5.55 0.07 -9.14 16 10 C 0.07 1.26 3.21 -68.87 -0.22 1.04 16 11 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 12 N -0.83 -14.07 8.94 -5.66 -0.05 -14.12 16 13 C -0.13 -2.71 4.78 -26.73 -0.13 -2.84 16 14 C 0.03 0.64 4.74 -27.88 -0.13 0.51 16 15 C -0.52 -14.43 9.11 -34.44 -0.31 -14.75 16 16 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 17 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 18 N -0.89 -26.13 13.29 55.43 0.74 -25.39 16 19 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 C -0.17 -1.59 4.71 -26.50 -0.12 -1.71 16 24 C 0.06 0.59 6.67 37.30 0.25 0.84 16 25 O -0.38 -4.23 10.77 -35.23 -0.38 -4.61 16 26 C 0.07 0.68 6.68 37.21 0.25 0.93 16 27 C -0.16 -1.71 4.81 -26.59 -0.13 -1.84 16 28 H 0.07 0.94 8.13 -51.93 -0.42 0.51 16 29 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.06 0.64 8.13 -51.92 -0.42 0.22 16 31 H 0.13 1.64 6.30 -51.93 -0.33 1.31 16 32 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.40 5.01 7.42 -40.82 -0.30 4.70 16 34 H 0.34 5.91 8.58 -39.29 -0.34 5.57 16 35 H 0.35 6.11 7.55 -39.29 -0.30 5.81 16 36 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.02 0.43 6.87 -51.93 -0.36 0.07 16 40 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 41 H 0.10 1.07 5.98 -51.93 -0.31 0.76 16 42 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.05 0.50 7.02 -51.93 -0.36 0.13 16 45 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.05 0.61 7.75 -51.93 -0.40 0.21 16 47 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.10 1.24 6.22 -51.93 -0.32 0.92 16 LS Contribution 379.30 15.07 5.72 5.72 Total: -1.00 -31.73 379.30 -6.89 -38.62 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: -7.63 Total: 14.39 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: 0.46 Total: 0.44 kcal Atomic # 7 Polarization: -49.37 SS G_CDS: 0.55 Total: -48.82 kcal Atomic # 8 Polarization: -25.71 SS G_CDS: -0.96 Total: -26.68 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.73 -6.89 -38.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329035100.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.099 kcal (2) G-P(sol) polarization free energy of solvation -31.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds