Wall clock time and date at job start Tue Mar 31 2020 15:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50702 * 119.99809 * 2 1 4 4 N 1.46505 * 109.46820 * 125.00644 * 3 2 1 5 5 C 1.37741 * 127.16439 * 94.70660 * 4 3 2 6 6 C 1.47251 * 126.49419 * 0.02562 * 5 4 3 7 7 N 1.31673 * 125.87028 * 359.73952 * 6 5 4 8 8 C 1.33733 * 109.25595 * 179.97438 * 7 6 5 9 9 C 1.34893 * 108.44912 * 359.97438 * 8 7 6 10 10 N 1.36634 * 125.87087 * 179.69357 * 6 5 4 11 11 H 0.97003 * 126.51878 * 0.02562 * 10 6 5 12 12 N 1.31460 * 107.01436 * 179.75907 * 5 4 3 13 13 N 1.28508 * 109.89837 * 0.23976 * 12 5 4 14 14 C 1.31483 * 110.11324 * 0.02562 * 13 12 5 15 15 N 1.38300 * 126.34719 * 180.02562 * 14 13 12 16 16 C 1.46848 * 110.99883 * 59.27116 * 15 14 13 17 17 C 1.53040 * 109.52175 * 174.16210 * 16 15 14 18 18 C 1.53120 * 109.28074 * 59.17394 * 17 16 15 19 19 C 1.53116 * 109.16237 * 302.34635 * 18 17 16 20 20 H 1.09002 * 109.50035 * 297.71544 * 19 18 17 21 21 C 1.50698 * 109.53730 * 177.61535 * 19 18 17 22 22 H 1.07993 * 119.99704 * 275.18586 * 21 19 18 23 23 C 1.37880 * 119.99632 * 95.18632 * 21 19 18 24 24 N 1.31517 * 119.99474 * 184.87171 * 23 21 19 25 25 Si 1.86789 * 120.00408 * 4.86752 * 23 21 19 26 26 H 1.48502 * 109.47215 * 84.74684 * 25 23 21 27 27 H 1.48495 * 109.47369 * 204.74759 * 25 23 21 28 28 H 1.48503 * 109.47507 * 324.75029 * 25 23 21 29 29 C 1.46840 * 111.00079 * 295.05732 * 15 14 13 30 30 H 1.07995 * 120.00456 * 359.97438 * 1 2 3 31 31 H 1.08004 * 119.99788 * 179.97438 * 1 2 3 32 32 H 1.08003 * 120.00451 * 180.02562 * 2 1 3 33 33 H 1.09001 * 109.46969 * 5.01391 * 3 2 1 34 34 H 1.08998 * 109.47853 * 245.00485 * 3 2 1 35 35 H 1.08000 * 125.77919 * 179.73587 * 8 7 6 36 36 H 1.08004 * 126.46747 * 179.97438 * 9 8 7 37 37 H 1.08999 * 109.46043 * 294.17212 * 16 15 14 38 38 H 1.08997 * 109.46656 * 54.13776 * 16 15 14 39 39 H 1.09003 * 109.49872 * 299.23036 * 17 16 15 40 40 H 1.09004 * 109.50445 * 179.11918 * 17 16 15 41 41 H 1.09003 * 109.51809 * 182.44144 * 18 17 16 42 42 H 1.08994 * 109.57098 * 62.28339 * 18 17 16 43 43 H 0.97000 * 119.99923 * 180.02562 * 24 23 21 44 44 H 1.08996 * 109.46386 * 305.85260 * 29 15 14 45 45 H 1.08994 * 109.46242 * 65.83451 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 4.3258 0.9811 1.1218 6 6 5.0973 0.5031 -0.0378 7 7 4.6303 0.3298 -1.2567 8 6 5.6140 -0.1133 -2.0469 9 6 6.7376 -0.2239 -1.3087 10 7 6.4208 0.1641 -0.0341 11 1 7.0220 0.1929 0.7266 12 7 4.7793 1.1595 2.3428 13 7 3.8346 1.5860 3.1023 14 6 2.7205 1.7057 2.4144 15 7 1.4996 2.1374 2.9000 16 6 1.6027 3.4944 3.4514 17 6 0.2105 3.9937 3.8447 18 6 -0.3921 3.0446 4.8842 19 6 -0.4436 1.6292 4.3023 20 1 -1.0934 1.6190 3.4272 21 6 -0.9811 0.6772 5.3394 22 1 -0.3154 0.2432 6.0706 23 6 -2.3229 0.3603 5.3546 24 7 -2.8095 -0.3938 6.3160 25 14 -3.4495 1.0019 4.0100 26 1 -3.3884 0.0928 2.8373 27 1 -4.8435 1.0609 4.5184 28 1 -3.0124 2.3621 3.6050 29 6 0.9676 1.1985 3.8958 30 1 -0.5401 0.9352 0.0004 31 1 -0.5400 -0.9354 -0.0004 32 1 1.8501 -0.9353 -0.0004 33 1 1.3585 2.1316 0.0898 34 1 2.6212 1.4028 -0.9314 35 1 5.5233 -0.3471 -3.0974 36 1 7.7044 -0.5565 -1.6569 37 1 2.2456 3.4809 4.3315 38 1 2.0287 4.1601 2.7009 39 1 -0.4291 4.0207 2.9624 40 1 0.2892 4.9950 4.2684 41 1 -1.4010 3.3722 5.1350 42 1 0.2255 3.0470 5.7822 43 1 -3.7534 -0.6171 6.3266 44 1 0.9323 0.1966 3.4679 45 1 1.6134 1.1958 4.7738 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340526553.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:20:34 Heat of formation + Delta-G solvation = 168.583166 kcal Electronic energy + Delta-G solvation = -28440.751281 eV Core-core repulsion = 24689.386805 eV Total energy + Delta-G solvation = -3751.364476 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.171 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.95432 -42.04193 -38.52279 -36.10782 -33.96344 -32.94316 -32.64464 -32.31556 -30.81418 -30.41464 -28.25958 -26.80535 -25.13255 -24.08971 -23.52929 -21.86960 -21.59897 -20.97140 -20.63917 -19.88594 -18.94291 -18.46004 -17.28089 -16.73620 -16.27125 -15.93559 -15.26532 -15.13038 -14.65590 -14.32467 -14.26018 -14.14748 -13.91853 -13.80197 -13.51013 -13.15048 -12.80002 -12.56489 -12.39516 -12.25340 -11.63096 -11.51307 -11.23528 -11.08138 -10.80467 -10.74193 -10.50304 -10.45784 -10.28604 -10.13673 -9.93950 -9.78963 -9.66575 -9.50430 -9.39331 -9.03739 -8.55312 -8.40282 -8.26455 -6.10737 -4.11002 0.99104 1.80993 2.07071 2.40336 2.58204 2.96387 3.15835 3.27431 3.35977 3.37949 3.62365 4.05427 4.39744 4.56657 4.75922 4.86039 4.92340 5.02892 5.13261 5.19810 5.25837 5.32946 5.47944 5.55127 5.57592 5.69782 5.73646 5.89012 5.95063 6.02233 6.07558 6.18456 6.25679 6.30345 6.42227 6.51101 6.56259 6.60387 6.70101 6.73850 6.84900 6.92203 7.11506 7.28428 7.42875 7.53998 7.58829 7.75368 8.48505 8.64064 8.94657 9.51676 11.02337 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.017838 B = 0.003568 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.288010 B = 7845.417319 C = 8450.698208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.178 4.178 3 C 0.141 3.859 4 N -0.436 5.436 5 C 0.230 3.770 6 C 0.288 3.712 7 N -0.468 5.468 8 C -0.021 4.021 9 C -0.035 4.035 10 N -0.542 5.542 11 H 0.430 0.570 12 N -0.269 5.269 13 N -0.306 5.306 14 C 0.383 3.617 15 N -0.471 5.471 16 C 0.074 3.926 17 C -0.119 4.119 18 C -0.116 4.116 19 C 0.025 3.975 20 H 0.040 0.960 21 C -0.513 4.513 22 H 0.073 0.927 23 C 0.074 3.926 24 N -0.898 5.898 25 Si 0.877 3.123 26 H -0.275 1.275 27 H -0.291 1.291 28 H -0.262 1.262 29 C 0.085 3.915 30 H 0.103 0.897 31 H 0.104 0.896 32 H 0.110 0.890 33 H 0.101 0.899 34 H 0.119 0.881 35 H 0.178 0.822 36 H 0.186 0.814 37 H 0.051 0.949 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.056 0.944 42 H 0.055 0.945 43 H 0.264 0.736 44 H 0.068 0.932 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.913 3.812 -17.573 23.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.197 4.197 3 C 0.019 3.981 4 N -0.127 5.127 5 C -0.035 4.035 6 C 0.025 3.975 7 N -0.190 5.190 8 C -0.172 4.172 9 C -0.172 4.172 10 N -0.146 5.146 11 H 0.270 0.730 12 N -0.115 5.115 13 N -0.152 5.152 14 C 0.027 3.973 15 N -0.198 5.198 16 C -0.053 4.053 17 C -0.157 4.157 18 C -0.154 4.154 19 C 0.006 3.994 20 H 0.058 0.942 21 C -0.551 4.551 22 H 0.091 0.909 23 C -0.128 4.128 24 N -0.536 5.536 25 Si 0.704 3.296 26 H -0.201 1.201 27 H -0.217 1.217 28 H -0.187 1.187 29 C -0.040 4.040 30 H 0.121 0.879 31 H 0.122 0.878 32 H 0.128 0.872 33 H 0.119 0.881 34 H 0.137 0.863 35 H 0.195 0.805 36 H 0.203 0.797 37 H 0.069 0.931 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.087 0.913 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 14.501 3.942 -17.003 22.692 hybrid contribution 0.065 -0.143 -0.566 0.587 sum 14.566 3.799 -17.569 23.136 Atomic orbital electron populations 1.23953 0.95479 1.02671 0.96387 1.22817 0.96048 0.97420 1.03384 1.21155 0.91592 0.97844 0.87469 1.46306 1.08650 1.47559 1.10182 1.20488 0.82458 1.07250 0.93343 1.18946 0.81808 1.05725 0.90980 1.70395 1.31282 1.17949 0.99326 1.22382 0.88686 1.05690 1.00413 1.22973 1.02172 1.08178 0.83855 1.43280 1.10103 1.49580 1.11634 0.73017 1.74352 1.23719 1.15712 0.97723 1.74740 0.96891 1.19137 1.24446 1.22571 0.93175 0.99417 0.82107 1.58930 1.15703 1.04798 1.40354 1.22080 0.98638 0.86364 0.98241 1.21714 0.94843 0.98768 1.00349 1.21923 1.00007 0.96367 0.97070 1.19162 0.91012 0.92910 0.96345 0.94158 1.20895 0.94126 1.26061 1.14030 0.90878 1.25038 0.97908 0.94406 0.95471 1.69908 1.14105 1.37442 1.32120 0.86855 0.79766 0.80315 0.82622 1.20108 1.21748 1.18679 1.22451 0.97785 0.93191 0.90570 0.87919 0.87781 0.87209 0.88113 0.86316 0.80514 0.79738 0.93062 0.91870 0.91808 0.91972 0.92478 0.92630 0.92595 0.91348 0.93615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 14.32 29.02 0.42 -1.50 16 2 C -0.18 -2.38 9.85 -36.02 -0.35 -2.74 16 3 C 0.14 1.85 6.34 -5.19 -0.03 1.82 16 4 N -0.44 -6.81 2.82 -116.10 -0.33 -7.14 16 5 C 0.23 3.56 7.99 -153.71 -1.23 2.33 16 6 C 0.29 3.67 7.99 -154.57 -1.23 2.43 16 7 N -0.47 -5.66 9.34 -11.32 -0.11 -5.76 16 8 C -0.02 -0.19 11.84 -17.91 -0.21 -0.40 16 9 C -0.04 -0.25 12.03 -16.46 -0.20 -0.45 16 10 N -0.54 -5.01 6.23 -10.61 -0.07 -5.08 16 11 H 0.43 3.18 8.96 -40.82 -0.37 2.81 16 12 N -0.27 -4.64 12.24 32.51 0.40 -4.24 16 13 N -0.31 -5.80 12.16 30.29 0.37 -5.43 16 14 C 0.38 6.79 6.40 -319.02 -2.04 4.74 16 15 N -0.47 -8.39 4.66 -174.59 -0.81 -9.20 16 16 C 0.07 1.19 5.35 -3.83 -0.02 1.17 16 17 C -0.12 -1.92 6.09 -26.65 -0.16 -2.08 16 18 C -0.12 -2.31 5.27 -26.61 -0.14 -2.45 16 19 C 0.03 0.57 1.93 -91.69 -0.18 0.39 16 20 H 0.04 0.92 5.30 -51.93 -0.27 0.65 16 21 C -0.51 -13.91 8.87 -34.44 -0.31 -14.21 16 22 H 0.07 2.18 8.06 -52.49 -0.42 1.76 16 23 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 24 N -0.90 -26.93 13.96 55.43 0.77 -26.16 16 25 Si 0.88 20.87 26.99 -169.99 -4.59 16.28 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 27 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 28 H -0.26 -5.90 6.82 56.52 0.39 -5.51 16 29 C 0.09 1.77 4.66 -3.83 -0.02 1.75 16 30 H 0.10 1.28 7.84 -52.49 -0.41 0.87 16 31 H 0.10 1.29 8.06 -52.48 -0.42 0.86 16 32 H 0.11 1.53 8.06 -52.48 -0.42 1.11 16 33 H 0.10 1.26 7.79 -51.93 -0.40 0.85 16 34 H 0.12 1.45 6.40 -51.93 -0.33 1.12 16 35 H 0.18 1.04 8.06 -52.49 -0.42 0.61 16 36 H 0.19 0.54 8.06 -52.48 -0.42 0.12 16 37 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.06 0.92 8.10 -51.93 -0.42 0.50 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 44 H 0.07 1.49 8.10 -51.93 -0.42 1.07 16 45 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 373.77 15.07 5.63 5.63 Total: -1.00 -32.49 373.77 -10.97 -43.46 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -6.43 Total: 4.86 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: -5.81 Total: -7.21 kcal Atomic # 7 Polarization: -63.24 SS G_CDS: 0.23 Total: -63.01 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.59 Total: 16.28 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.49 -10.97 -43.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340526553.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 212.040 kcal (2) G-P(sol) polarization free energy of solvation -32.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 179.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 168.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds