Wall clock time and date at job start Tue Mar 31 2020 15:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50702 * 119.99809 * 2 1 4 4 N 1.46505 * 109.46820 * 125.00644 * 3 2 1 5 5 C 1.37741 * 127.16439 * 94.70660 * 4 3 2 6 6 C 1.47251 * 126.49419 * 0.02562 * 5 4 3 7 7 N 1.31673 * 125.87028 * 359.73952 * 6 5 4 8 8 C 1.33733 * 109.25595 * 179.97438 * 7 6 5 9 9 C 1.34893 * 108.44912 * 359.97438 * 8 7 6 10 10 N 1.36634 * 125.87087 * 179.69357 * 6 5 4 11 11 H 0.97003 * 126.51878 * 0.02562 * 10 6 5 12 12 N 1.31460 * 107.01436 * 179.75907 * 5 4 3 13 13 N 1.28508 * 109.89837 * 0.23976 * 12 5 4 14 14 C 1.31483 * 110.11324 * 0.02562 * 13 12 5 15 15 N 1.38300 * 126.34719 * 180.02562 * 14 13 12 16 16 C 1.46848 * 110.99883 * 59.27116 * 15 14 13 17 17 C 1.53040 * 109.52175 * 174.16210 * 16 15 14 18 18 C 1.53120 * 109.28074 * 59.17394 * 17 16 15 19 19 C 1.53116 * 109.16237 * 302.34635 * 18 17 16 20 20 H 1.09002 * 109.50035 * 297.71544 * 19 18 17 21 21 C 1.50698 * 109.53730 * 177.61535 * 19 18 17 22 22 H 1.07993 * 119.99704 * 275.18586 * 21 19 18 23 23 C 1.37880 * 119.99632 * 95.18632 * 21 19 18 24 24 N 1.31517 * 119.99474 * 184.87171 * 23 21 19 25 25 Si 1.86789 * 120.00408 * 4.86752 * 23 21 19 26 26 H 1.48502 * 109.47215 * 84.74684 * 25 23 21 27 27 H 1.48495 * 109.47369 * 204.74759 * 25 23 21 28 28 H 1.48503 * 109.47507 * 324.75029 * 25 23 21 29 29 C 1.46840 * 111.00079 * 295.05732 * 15 14 13 30 30 H 1.07995 * 120.00456 * 359.97438 * 1 2 3 31 31 H 1.08004 * 119.99788 * 179.97438 * 1 2 3 32 32 H 1.08003 * 120.00451 * 180.02562 * 2 1 3 33 33 H 1.09001 * 109.46969 * 5.01391 * 3 2 1 34 34 H 1.08998 * 109.47853 * 245.00485 * 3 2 1 35 35 H 1.08000 * 125.77919 * 179.73587 * 8 7 6 36 36 H 1.08004 * 126.46747 * 179.97438 * 9 8 7 37 37 H 1.08999 * 109.46043 * 294.17212 * 16 15 14 38 38 H 1.08997 * 109.46656 * 54.13776 * 16 15 14 39 39 H 1.09003 * 109.49872 * 299.23036 * 17 16 15 40 40 H 1.09004 * 109.50445 * 179.11918 * 17 16 15 41 41 H 1.09003 * 109.51809 * 182.44144 * 18 17 16 42 42 H 1.08994 * 109.57098 * 62.28339 * 18 17 16 43 43 H 0.97000 * 119.99923 * 180.02562 * 24 23 21 44 44 H 1.08996 * 109.46386 * 305.85260 * 29 15 14 45 45 H 1.08994 * 109.46242 * 65.83451 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 4.3258 0.9811 1.1218 6 6 5.0973 0.5031 -0.0378 7 7 4.6303 0.3298 -1.2567 8 6 5.6140 -0.1133 -2.0469 9 6 6.7376 -0.2239 -1.3087 10 7 6.4208 0.1641 -0.0341 11 1 7.0220 0.1929 0.7266 12 7 4.7793 1.1595 2.3428 13 7 3.8346 1.5860 3.1023 14 6 2.7205 1.7057 2.4144 15 7 1.4996 2.1374 2.9000 16 6 1.6027 3.4944 3.4514 17 6 0.2105 3.9937 3.8447 18 6 -0.3921 3.0446 4.8842 19 6 -0.4436 1.6292 4.3023 20 1 -1.0934 1.6190 3.4272 21 6 -0.9811 0.6772 5.3394 22 1 -0.3154 0.2432 6.0706 23 6 -2.3229 0.3603 5.3546 24 7 -2.8095 -0.3938 6.3160 25 14 -3.4495 1.0019 4.0100 26 1 -3.3884 0.0928 2.8373 27 1 -4.8435 1.0609 4.5184 28 1 -3.0124 2.3621 3.6050 29 6 0.9676 1.1985 3.8958 30 1 -0.5401 0.9352 0.0004 31 1 -0.5400 -0.9354 -0.0004 32 1 1.8501 -0.9353 -0.0004 33 1 1.3585 2.1316 0.0898 34 1 2.6212 1.4028 -0.9314 35 1 5.5233 -0.3471 -3.0974 36 1 7.7044 -0.5565 -1.6569 37 1 2.2456 3.4809 4.3315 38 1 2.0287 4.1601 2.7009 39 1 -0.4291 4.0207 2.9624 40 1 0.2892 4.9950 4.2684 41 1 -1.4010 3.3722 5.1350 42 1 0.2255 3.0470 5.7822 43 1 -3.7534 -0.6171 6.3266 44 1 0.9323 0.1966 3.4679 45 1 1.6134 1.1958 4.7738 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340526553.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:20:34 Heat of formation + Delta-G solvation = 149.777510 kcal Electronic energy + Delta-G solvation = -28441.566756 eV Core-core repulsion = 24689.386805 eV Total energy + Delta-G solvation = -3752.179951 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.171 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.15799 -42.83276 -40.02882 -37.23228 -35.68034 -34.10996 -33.90670 -33.54241 -32.13832 -31.86566 -29.30421 -27.90288 -27.05875 -25.55680 -24.54490 -23.22770 -22.67009 -22.08013 -21.70664 -20.92321 -20.46679 -19.54322 -18.99559 -18.14950 -17.48729 -17.30272 -16.30428 -16.12728 -16.03998 -15.71201 -15.50897 -15.46983 -14.92879 -14.77167 -14.67734 -14.54495 -14.40665 -14.28562 -13.76451 -13.43866 -12.96848 -12.87470 -12.85041 -12.58711 -12.55497 -12.01063 -11.82096 -11.78898 -11.42473 -11.37696 -11.31993 -11.23343 -11.18783 -11.01860 -10.70238 -10.64444 -10.49602 -9.87622 -9.18131 -8.27213 -6.32879 -0.03335 0.71350 1.05167 1.39340 1.40357 1.41737 1.53109 1.58655 2.08040 2.21012 2.38760 2.61053 2.83401 3.09684 3.60548 3.72659 3.82658 3.90121 4.06244 4.12291 4.19077 4.23648 4.28046 4.39182 4.41932 4.51394 4.56114 4.61275 4.71169 4.77672 4.82784 4.91007 4.93292 4.95888 5.00452 5.12562 5.20929 5.35265 5.53196 5.56452 5.58343 5.65258 5.68248 5.70560 5.82803 6.15345 6.23011 6.33195 6.74601 6.83126 7.33462 7.37179 8.89853 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.017838 B = 0.003568 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.288010 B = 7845.417319 C = 8450.698208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.185 4.185 3 C 0.143 3.857 4 N -0.436 5.436 5 C 0.250 3.750 6 C 0.238 3.762 7 N -0.478 5.478 8 C -0.043 4.043 9 C 0.001 3.999 10 N -0.534 5.534 11 H 0.438 0.562 12 N -0.296 5.296 13 N -0.336 5.336 14 C 0.366 3.634 15 N -0.459 5.459 16 C 0.072 3.928 17 C -0.107 4.107 18 C -0.115 4.115 19 C 0.029 3.971 20 H 0.046 0.954 21 C -0.518 4.518 22 H 0.024 0.976 23 C 0.014 3.986 24 N -0.951 5.951 25 Si 0.943 3.057 26 H -0.264 1.264 27 H -0.292 1.292 28 H -0.234 1.234 29 C 0.103 3.897 30 H 0.113 0.887 31 H 0.108 0.892 32 H 0.099 0.901 33 H 0.111 0.889 34 H 0.129 0.871 35 H 0.205 0.795 36 H 0.234 0.766 37 H 0.039 0.961 38 H 0.089 0.911 39 H 0.076 0.924 40 H 0.094 0.906 41 H 0.052 0.948 42 H 0.042 0.958 43 H 0.266 0.734 44 H 0.049 0.951 45 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.896 5.335 -21.409 27.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.204 4.204 3 C 0.023 3.977 4 N -0.126 5.126 5 C -0.017 4.017 6 C -0.023 4.023 7 N -0.201 5.201 8 C -0.193 4.193 9 C -0.137 4.137 10 N -0.139 5.139 11 H 0.279 0.721 12 N -0.140 5.140 13 N -0.181 5.181 14 C 0.009 3.991 15 N -0.186 5.186 16 C -0.054 4.054 17 C -0.144 4.144 18 C -0.153 4.153 19 C 0.010 3.990 20 H 0.064 0.936 21 C -0.557 4.557 22 H 0.042 0.958 23 C -0.183 4.183 24 N -0.591 5.591 25 Si 0.766 3.234 26 H -0.189 1.189 27 H -0.218 1.218 28 H -0.157 1.157 29 C -0.024 4.024 30 H 0.131 0.869 31 H 0.126 0.874 32 H 0.117 0.883 33 H 0.129 0.871 34 H 0.147 0.853 35 H 0.222 0.778 36 H 0.250 0.750 37 H 0.057 0.943 38 H 0.107 0.893 39 H 0.095 0.905 40 H 0.112 0.888 41 H 0.071 0.929 42 H 0.061 0.939 43 H 0.075 0.925 44 H 0.068 0.932 45 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 15.511 5.493 -20.827 26.543 hybrid contribution -0.009 -0.762 0.541 0.935 sum 15.502 4.731 -20.286 25.966 Atomic orbital electron populations 1.24108 0.95371 1.03379 0.95532 1.22776 0.96263 0.97218 1.04155 1.21295 0.91482 0.97949 0.86983 1.46421 1.09123 1.47135 1.09962 1.20986 0.82438 1.04715 0.93582 1.18670 0.83219 1.09717 0.90649 1.70308 1.32839 1.17530 0.99416 1.23018 0.88566 1.06044 1.01686 1.23823 1.03431 1.04251 0.82175 1.43397 1.09086 1.48570 1.12849 0.72148 1.74272 1.23658 1.17526 0.98584 1.74630 0.97739 1.20016 1.25753 1.22471 0.92815 1.00806 0.82970 1.58847 1.16027 1.04751 1.38936 1.22188 0.98828 0.85793 0.98588 1.21647 0.94281 0.99049 0.99443 1.21796 1.00003 0.95608 0.97868 1.19062 0.91559 0.93347 0.95046 0.93571 1.21142 0.93783 1.26641 1.14104 0.95782 1.25960 0.99666 0.94670 0.97978 1.70073 1.14640 1.39684 1.34694 0.85793 0.77027 0.81191 0.79371 1.18878 1.21844 1.15708 1.21991 0.96758 0.93182 0.90425 0.86911 0.87404 0.88274 0.87102 0.85348 0.77788 0.75017 0.94258 0.89306 0.90536 0.88757 0.92933 0.93901 0.92530 0.93237 0.95969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.59 14.32 67.78 0.97 -2.62 16 2 C -0.19 -4.81 9.85 25.65 0.25 -4.56 16 3 C 0.14 3.58 6.34 85.63 0.54 4.13 16 4 N -0.44 -13.42 2.82 -521.23 -1.47 -14.89 16 5 C 0.25 7.65 7.99 135.92 1.09 8.74 16 6 C 0.24 5.76 7.99 136.23 1.09 6.84 16 7 N -0.48 -10.64 9.34 -189.71 -1.77 -12.42 16 8 C -0.04 -0.61 11.84 83.63 0.99 0.38 16 9 C 0.00 0.01 12.03 83.13 1.00 1.01 16 10 N -0.53 -8.65 6.23 -187.49 -1.17 -9.82 16 11 H 0.44 5.65 8.96 -92.71 -0.83 4.82 16 12 N -0.30 -10.36 12.24 -51.04 -0.62 -10.99 16 13 N -0.34 -13.03 12.16 -58.07 -0.71 -13.74 16 14 C 0.37 13.01 6.40 260.16 1.67 14.67 16 15 N -0.46 -16.12 4.66 -706.28 -3.29 -19.41 16 16 C 0.07 2.23 5.35 86.33 0.46 2.69 16 17 C -0.11 -3.13 6.09 30.65 0.19 -2.94 16 18 C -0.11 -4.49 5.27 30.67 0.16 -4.32 16 19 C 0.03 1.32 1.93 -11.49 -0.02 1.30 16 20 H 0.05 2.04 5.30 -2.39 -0.01 2.02 16 21 C -0.52 -29.36 8.87 25.60 0.23 -29.13 16 22 H 0.02 1.54 8.06 -2.91 -0.02 1.52 16 23 C 0.01 0.82 5.47 84.66 0.46 1.29 16 24 N -0.95 -59.31 13.96 21.45 0.30 -59.01 16 25 Si 0.94 42.66 26.99 68.60 1.85 44.51 16 26 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 27 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 28 H -0.23 -9.47 6.82 99.48 0.68 -8.79 16 29 C 0.10 4.41 4.66 86.33 0.40 4.81 16 30 H 0.11 2.54 7.84 -2.91 -0.02 2.52 16 31 H 0.11 2.54 8.06 -2.91 -0.02 2.51 16 32 H 0.10 2.77 8.06 -2.91 -0.02 2.75 16 33 H 0.11 2.53 7.79 -2.39 -0.02 2.51 16 34 H 0.13 2.95 6.40 -2.39 -0.02 2.94 16 35 H 0.21 1.58 8.06 -2.91 -0.02 1.55 16 36 H 0.23 -0.03 8.06 -2.91 -0.02 -0.06 16 37 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.09 2.33 8.10 -2.39 -0.02 2.32 16 39 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 40 H 0.09 2.24 8.14 -2.38 -0.02 2.22 16 41 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 42 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 44 H 0.05 2.26 8.10 -2.39 -0.02 2.24 16 45 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -75.44 373.77 2.74 -72.70 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: 0.15 Total: 20.78 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: 9.48 Total: 2.28 kcal Atomic # 7 Polarization: -131.54 SS G_CDS: -8.73 Total: -140.27 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 1.85 Total: 44.51 kcal Total: -75.44 2.74 -72.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340526553.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 222.473 kcal (2) G-P(sol) polarization free energy of solvation -75.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds