Wall clock time and date at job start Tue Mar 31 2020 15:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50704 * 119.99935 * 2 1 4 4 N 1.46501 * 109.46873 * 124.99759 * 3 2 1 5 5 C 1.37682 * 127.18003 * 91.49666 * 4 3 2 6 6 C 1.47284 * 126.50190 * 359.97438 * 5 4 3 7 7 C 1.36352 * 126.79027 * 163.23238 * 6 5 4 8 8 N 1.33725 * 107.86622 * 179.89467 * 7 6 5 9 9 C 1.30613 * 109.61124 * 0.37667 * 8 7 6 10 10 N 1.35113 * 109.03426 * 359.76575 * 9 8 7 11 11 H 0.97002 * 126.46123 * 180.02562 * 10 9 8 12 12 N 1.31458 * 107.00112 * 179.97438 * 5 4 3 13 13 N 1.28506 * 109.92730 * 359.97438 * 12 5 4 14 14 C 1.31302 * 110.14499 * 359.72621 * 13 12 5 15 15 N 1.38487 * 126.35568 * 180.27825 * 14 13 12 16 16 C 1.46849 * 111.00246 * 68.10066 * 15 14 13 17 17 C 1.53028 * 109.52775 * 174.16040 * 16 15 14 18 18 C 1.53130 * 109.27879 * 59.18046 * 17 16 15 19 19 C 1.53117 * 109.15780 * 302.34945 * 18 17 16 20 20 H 1.08998 * 109.50383 * 297.71303 * 19 18 17 21 21 C 1.50703 * 109.53613 * 177.61083 * 19 18 17 22 22 H 1.07992 * 119.99965 * 268.46517 * 21 19 18 23 23 C 1.37879 * 119.99401 * 88.46150 * 21 19 18 24 24 N 1.31516 * 119.99441 * 185.82270 * 23 21 19 25 25 Si 1.86797 * 120.00494 * 5.82979 * 23 21 19 26 26 H 1.48493 * 109.47355 * 92.68158 * 25 23 21 27 27 H 1.48504 * 109.46864 * 212.68506 * 25 23 21 28 28 H 1.48506 * 109.46813 * 332.68066 * 25 23 21 29 29 C 1.46844 * 111.00171 * 303.89612 * 15 14 13 30 30 H 1.08004 * 119.99980 * 0.02562 * 1 2 3 31 31 H 1.07996 * 120.00360 * 179.72126 * 1 2 3 32 32 H 1.07998 * 120.00328 * 180.02562 * 2 1 3 33 33 H 1.08995 * 109.47144 * 244.99573 * 3 2 1 34 34 H 1.08999 * 109.47022 * 4.99838 * 3 2 1 35 35 H 1.08001 * 126.06846 * 0.02562 * 7 6 5 36 36 H 1.07999 * 125.48339 * 179.78231 * 9 8 7 37 37 H 1.09008 * 109.46386 * 294.17939 * 16 15 14 38 38 H 1.09001 * 109.46049 * 54.14608 * 16 15 14 39 39 H 1.09001 * 109.50425 * 299.24530 * 17 16 15 40 40 H 1.09002 * 109.50748 * 179.11868 * 17 16 15 41 41 H 1.08989 * 109.52549 * 182.44226 * 18 17 16 42 42 H 1.09001 * 109.56885 * 62.28401 * 18 17 16 43 43 H 0.97002 * 120.00036 * 179.97438 * 24 23 21 44 44 H 1.09006 * 109.45840 * 305.85430 * 29 15 14 45 45 H 1.08994 * 109.46558 * 65.81665 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 4.3087 0.9241 1.1373 6 6 5.0595 0.3710 -0.0026 7 6 6.4142 0.2602 -0.1117 8 7 6.6863 -0.2948 -1.2975 9 6 5.5722 -0.5289 -1.9379 10 7 4.5321 -0.1315 -1.1726 11 1 3.5916 -0.1894 -1.4030 12 7 4.7671 1.1220 2.3534 13 7 3.8422 1.6183 3.0948 14 6 2.7395 1.7735 2.3990 15 7 1.5402 2.2859 2.8647 16 6 1.6641 3.7158 3.1757 17 6 0.2907 4.2795 3.5468 18 6 -0.2568 3.5202 4.7586 19 6 -0.3304 2.0276 4.4251 20 1 -1.0219 1.8735 3.5967 21 6 -0.8130 1.2647 5.6319 22 1 -0.1005 0.8626 6.3368 23 6 -2.1641 1.0803 5.8358 24 7 -2.5906 0.5159 6.9445 25 14 -3.3886 1.6318 4.5375 26 1 -3.6828 0.5002 3.6221 27 1 -4.6435 2.0744 5.1969 28 1 -2.8129 2.7595 3.7614 29 6 1.0611 1.5292 4.0284 30 1 -0.5400 0.9353 -0.0004 31 1 -0.5400 -0.9352 -0.0045 32 1 1.8500 -0.9353 -0.0004 33 1 2.6213 1.4026 -0.9313 34 1 1.3585 2.1317 0.0895 35 1 7.1387 0.5645 0.6291 36 1 5.4949 -0.9695 -2.9209 37 1 2.3491 3.8473 4.0134 38 1 2.0504 4.2447 2.3044 39 1 -0.3911 4.1607 2.7046 40 1 0.3857 5.3371 3.7926 41 1 -1.2536 3.8891 4.9997 42 1 0.4037 3.6705 5.6125 43 1 -3.5412 0.3865 7.0882 44 1 1.0094 0.4700 3.7766 45 1 1.7489 1.6709 4.8620 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340540524.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:20:28 Heat of formation + Delta-G solvation = 169.585848 kcal Electronic energy + Delta-G solvation = -28414.659497 eV Core-core repulsion = 24663.338500 eV Total energy + Delta-G solvation = -3751.320997 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.171 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.03212 -42.11066 -38.58064 -36.48319 -34.04732 -33.18423 -32.73630 -32.33845 -31.00258 -30.47708 -28.04425 -27.14764 -25.17566 -24.14853 -23.36386 -22.08827 -21.68606 -21.31266 -20.57085 -20.27420 -18.98770 -18.55345 -17.38744 -16.84413 -16.37508 -16.05888 -15.54297 -15.20614 -14.79014 -14.58083 -14.36586 -14.21695 -14.03345 -13.77044 -13.65587 -13.23051 -12.89184 -12.72345 -12.63655 -12.33370 -11.90095 -11.62358 -11.29092 -11.14711 -10.83402 -10.69079 -10.57845 -10.50081 -10.33539 -10.29264 -10.02876 -9.94665 -9.82237 -9.68596 -9.52941 -9.07747 -8.59006 -8.47013 -8.21425 -6.14541 -4.14529 0.93029 1.59021 2.04440 2.29579 2.50023 2.71621 3.08766 3.20825 3.30681 3.32270 3.88096 3.97742 4.20849 4.34944 4.37139 4.39831 4.62724 4.80462 5.06032 5.09488 5.15976 5.17564 5.19380 5.31562 5.48748 5.52030 5.62743 5.75469 5.83008 5.93689 6.02601 6.12322 6.15840 6.18901 6.22582 6.28223 6.36592 6.47972 6.51548 6.66367 6.79096 6.85316 7.04645 7.22198 7.39291 7.47800 7.61639 7.71221 8.44571 8.68471 8.91305 9.47594 10.98558 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.018527 B = 0.003454 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.941156 B = 8105.614831 C = 8635.602136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.208 4.208 3 C 0.142 3.858 4 N -0.467 5.467 5 C 0.234 3.766 6 C 0.044 3.956 7 C 0.044 3.956 8 N -0.491 5.491 9 C 0.205 3.795 10 N -0.570 5.570 11 H 0.419 0.581 12 N -0.256 5.256 13 N -0.304 5.304 14 C 0.379 3.621 15 N -0.472 5.472 16 C 0.073 3.927 17 C -0.118 4.118 18 C -0.116 4.116 19 C 0.025 3.975 20 H 0.039 0.961 21 C -0.514 4.514 22 H 0.074 0.926 23 C 0.074 3.926 24 N -0.897 5.897 25 Si 0.874 3.126 26 H -0.279 1.279 27 H -0.289 1.289 28 H -0.258 1.258 29 C 0.087 3.913 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.111 0.889 33 H 0.087 0.913 34 H 0.112 0.888 35 H 0.184 0.816 36 H 0.215 0.785 37 H 0.051 0.949 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.056 0.944 42 H 0.056 0.944 43 H 0.264 0.736 44 H 0.067 0.933 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.422 2.003 -20.878 22.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.227 4.227 3 C 0.019 3.981 4 N -0.160 5.160 5 C -0.030 4.030 6 C -0.072 4.072 7 C -0.108 4.108 8 N -0.209 5.209 9 C -0.079 4.079 10 N -0.176 5.176 11 H 0.259 0.741 12 N -0.099 5.099 13 N -0.148 5.148 14 C 0.024 3.976 15 N -0.199 5.199 16 C -0.054 4.054 17 C -0.156 4.156 18 C -0.155 4.155 19 C 0.006 3.994 20 H 0.057 0.943 21 C -0.552 4.552 22 H 0.092 0.908 23 C -0.128 4.128 24 N -0.535 5.535 25 Si 0.702 3.298 26 H -0.205 1.205 27 H -0.215 1.215 28 H -0.183 1.183 29 C -0.039 4.039 30 H 0.126 0.874 31 H 0.127 0.873 32 H 0.129 0.871 33 H 0.105 0.895 34 H 0.130 0.870 35 H 0.201 0.799 36 H 0.232 0.768 37 H 0.069 0.931 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.086 0.914 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 9.641 1.776 -20.226 22.477 hybrid contribution -2.581 0.259 -0.936 2.757 sum 7.061 2.035 -21.162 22.402 Atomic orbital electron populations 1.24076 0.95386 1.03215 0.93557 1.22918 0.96728 0.97009 1.06059 1.20942 0.91906 0.98791 0.86448 1.46562 1.10481 1.47846 1.11134 1.21296 0.81793 1.05117 0.94840 1.17852 0.92953 1.09708 0.86721 1.22543 0.91674 1.01075 0.95544 1.70279 1.27032 1.17318 1.06284 1.25150 0.81408 1.02355 0.98989 1.43565 1.10905 1.48527 1.14621 0.74081 1.74455 1.22854 1.14760 0.97794 1.74751 0.97394 1.18079 1.24550 1.22623 0.93241 0.99419 0.82359 1.58997 1.18565 1.04541 1.37785 1.22096 0.98746 0.84776 0.99801 1.21707 0.95003 0.98722 1.00186 1.21958 1.00261 0.97681 0.95555 1.19176 0.91246 0.92070 0.96953 0.94320 1.20903 0.92760 1.34523 1.07030 0.90832 1.25018 0.98232 0.94426 0.95153 1.69916 1.14989 1.43757 1.24797 0.86891 0.80822 0.79719 0.82409 1.20492 1.21547 1.18281 1.22380 0.98221 0.96140 0.87133 0.87422 0.87321 0.87142 0.89537 0.86997 0.79866 0.76834 0.93092 0.92004 0.91916 0.91961 0.92540 0.92520 0.92601 0.91434 0.93333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.15 14.32 29.02 0.42 -0.74 16 2 C -0.21 -1.93 9.23 -36.02 -0.33 -2.26 16 3 C 0.14 1.36 5.94 -5.19 -0.03 1.33 16 4 N -0.47 -6.37 2.82 -116.04 -0.33 -6.69 16 5 C 0.23 3.36 7.91 -153.75 -1.22 2.15 16 6 C 0.04 0.51 6.94 -82.18 -0.57 -0.06 16 7 C 0.04 0.52 11.85 -17.41 -0.21 0.31 16 8 N -0.49 -5.40 11.21 -14.32 -0.16 -5.56 16 9 C 0.20 1.53 13.03 -90.22 -1.18 0.36 16 10 N -0.57 -4.51 5.70 -10.69 -0.06 -4.57 16 11 H 0.42 2.34 6.38 -40.82 -0.26 2.08 16 12 N -0.26 -4.48 12.23 32.51 0.40 -4.08 16 13 N -0.30 -5.72 12.11 30.34 0.37 -5.36 16 14 C 0.38 6.36 6.45 -318.69 -2.06 4.31 16 15 N -0.47 -7.99 4.67 -174.51 -0.81 -8.80 16 16 C 0.07 1.13 5.39 -3.84 -0.02 1.11 16 17 C -0.12 -1.84 6.09 -26.65 -0.16 -2.01 16 18 C -0.12 -2.28 5.07 -26.60 -0.13 -2.42 16 19 C 0.03 0.55 1.79 -91.69 -0.16 0.39 16 20 H 0.04 0.86 5.50 -51.93 -0.29 0.57 16 21 C -0.51 -13.77 8.86 -34.44 -0.31 -14.07 16 22 H 0.07 2.18 8.06 -52.49 -0.42 1.76 16 23 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 24 N -0.90 -26.66 13.96 55.43 0.77 -25.89 16 25 Si 0.87 20.35 26.61 -169.99 -4.52 15.83 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 27 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 28 H -0.26 -5.61 6.12 56.52 0.35 -5.27 16 29 C 0.09 1.75 4.58 -3.84 -0.02 1.73 16 30 H 0.11 0.97 7.84 -52.48 -0.41 0.56 16 31 H 0.11 0.92 8.06 -52.49 -0.42 0.50 16 32 H 0.11 1.00 7.98 -52.49 -0.42 0.58 16 33 H 0.09 0.59 6.39 -51.93 -0.33 0.26 16 34 H 0.11 1.07 7.79 -51.93 -0.40 0.66 16 35 H 0.18 2.02 8.06 -52.49 -0.42 1.59 16 36 H 0.22 0.61 8.06 -52.49 -0.42 0.19 16 37 H 0.05 0.84 8.14 -51.92 -0.42 0.42 16 38 H 0.06 0.85 8.10 -51.93 -0.42 0.43 16 39 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.06 1.15 7.23 -51.94 -0.38 0.78 16 42 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 44 H 0.07 1.44 8.10 -51.93 -0.42 1.01 16 45 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 369.14 15.07 5.56 5.56 Total: -1.00 -33.27 369.14 -11.18 -44.45 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -6.33 Total: 3.04 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: -6.07 Total: -7.94 kcal Atomic # 7 Polarization: -61.12 SS G_CDS: 0.18 Total: -60.94 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -4.52 Total: 15.83 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.27 -11.18 -44.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340540524.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 214.038 kcal (2) G-P(sol) polarization free energy of solvation -33.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 180.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 169.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds