Wall clock time and date at job start Tue Mar 31 2020 15:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50699 * 120.00025 * 2 1 4 4 N 1.46501 * 109.47247 * 125.27745 * 3 2 1 5 5 C 1.37684 * 127.18210 * 264.21924 * 4 3 2 6 6 C 1.47280 * 126.50088 * 0.02562 * 5 4 3 7 7 C 1.36351 * 126.78809 * 194.68406 * 6 5 4 8 8 N 1.33729 * 107.86908 * 179.89319 * 7 6 5 9 9 C 1.30618 * 109.60723 * 0.37314 * 8 7 6 10 10 N 1.35112 * 109.03797 * 359.76670 * 9 8 7 11 11 H 0.97000 * 126.47093 * 180.02562 * 10 9 8 12 12 N 1.31459 * 106.99657 * 179.83601 * 5 4 3 13 13 N 1.28502 * 109.92908 * 0.44666 * 12 5 4 14 14 C 1.31299 * 110.14743 * 359.71262 * 13 12 5 15 15 N 1.38487 * 126.35344 * 179.97438 * 14 13 12 16 16 C 1.46850 * 110.99893 * 271.14732 * 15 14 13 17 17 C 1.53038 * 109.52308 * 185.84053 * 16 15 14 18 18 C 1.53115 * 109.27998 * 300.81877 * 17 16 15 19 19 C 1.53116 * 109.16186 * 57.65230 * 18 17 16 20 20 H 1.09001 * 109.50040 * 62.28533 * 19 18 17 21 21 C 1.50695 * 109.50548 * 182.40641 * 19 18 17 22 22 H 1.08000 * 119.99841 * 119.80631 * 21 19 18 23 23 C 1.37872 * 120.00089 * 299.80287 * 21 19 18 24 24 N 1.31517 * 119.99841 * 0.02562 * 23 21 19 25 25 Si 1.86801 * 120.00346 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47088 * 59.99863 * 25 23 21 27 27 H 1.48497 * 109.47486 * 180.02562 * 25 23 21 28 28 H 1.48505 * 109.46919 * 300.00136 * 25 23 21 29 29 C 1.46842 * 111.00053 * 35.35260 * 15 14 13 30 30 H 1.07991 * 119.99953 * 359.71960 * 1 2 3 31 31 H 1.07999 * 119.99452 * 179.72645 * 1 2 3 32 32 H 1.08005 * 120.00204 * 180.27975 * 2 1 3 33 33 H 1.09005 * 109.47355 * 245.28092 * 3 2 1 34 34 H 1.09007 * 109.47098 * 5.27468 * 3 2 1 35 35 H 1.07999 * 126.06985 * 0.02757 * 7 6 5 36 36 H 1.07996 * 125.48188 * 179.76458 * 9 8 7 37 37 H 1.09007 * 109.46098 * 305.85307 * 16 15 14 38 38 H 1.08996 * 109.46869 * 65.81953 * 16 15 14 39 39 H 1.09004 * 109.50125 * 180.87558 * 17 16 15 40 40 H 1.08997 * 109.53550 * 60.78443 * 17 16 15 41 41 H 1.09009 * 109.51875 * 297.75064 * 18 17 16 42 42 H 1.08995 * 109.52234 * 177.56303 * 18 17 16 43 43 H 0.97005 * 120.00111 * 179.97438 * 24 23 21 44 44 H 1.09003 * 109.46522 * 294.17618 * 29 15 14 45 45 H 1.09002 * 109.46486 * 54.15822 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9985 1.3292 1.1276 5 6 2.7916 1.8892 2.3683 6 6 1.5765 2.5859 2.8234 7 6 1.4538 3.3769 3.9272 8 7 0.1919 3.8165 3.9787 9 6 -0.4818 3.3346 2.9687 10 7 0.3370 2.5626 2.2210 11 1 0.0979 2.0828 1.4126 12 7 3.8829 1.6804 3.0709 13 7 4.7464 1.0466 2.3610 14 6 4.2598 0.8059 1.1654 15 7 4.9058 0.1449 0.1341 16 6 5.6806 1.0828 -0.6884 17 6 6.2599 0.3448 -1.8974 18 6 7.1563 -0.7972 -1.4107 19 6 6.3375 -1.7330 -0.5172 20 1 5.5260 -2.1722 -1.0974 21 6 7.2270 -2.8274 0.0139 22 1 7.3641 -2.9425 1.0790 23 6 7.8656 -3.6816 -0.8597 24 7 7.6989 -3.5411 -2.1567 25 14 8.9687 -5.0378 -0.2014 26 1 8.1755 -5.9422 0.6692 27 1 9.5330 -5.8116 -1.3363 28 1 10.0752 -4.4372 0.5862 29 6 5.7559 -0.9347 0.6518 30 1 -0.5399 0.9352 0.0046 31 1 -0.5399 -0.9353 -0.0045 32 1 1.8500 -0.9353 -0.0046 33 1 2.6174 1.4049 -0.9335 34 1 1.3589 2.1315 0.0945 35 1 2.2372 3.6092 4.6333 36 1 -1.5253 3.5230 2.7642 37 1 5.0305 1.8877 -1.0315 38 1 6.4933 1.5010 -0.0945 39 1 6.8478 1.0378 -2.4993 40 1 5.4476 -0.0616 -2.4999 41 1 7.9909 -0.3878 -0.8414 42 1 7.5366 -1.3524 -2.2681 43 1 8.1485 -4.1419 -2.7715 44 1 6.5683 -0.5071 1.2395 45 1 5.1605 -1.5954 1.2820 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340540525.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:20:31 Heat of formation + Delta-G solvation = 169.964501 kcal Electronic energy + Delta-G solvation = -28232.210837 eV Core-core repulsion = 24480.906260 eV Total energy + Delta-G solvation = -3751.304577 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.171 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.01236 -42.09513 -38.42315 -36.60136 -34.05315 -33.12630 -32.85449 -32.17307 -30.87635 -30.05726 -27.95542 -27.17391 -25.11035 -23.95937 -23.32729 -22.12630 -21.71430 -21.11726 -20.93116 -20.23141 -18.85954 -18.40063 -17.34715 -16.56275 -16.41880 -15.71761 -15.40115 -15.11478 -15.07404 -14.60337 -14.45766 -14.18458 -13.98466 -13.71352 -13.66672 -12.97921 -12.86615 -12.64187 -12.56184 -12.00079 -11.91813 -11.58819 -10.98197 -10.88877 -10.79120 -10.62897 -10.55191 -10.50438 -10.30077 -10.28889 -10.08792 -10.02225 -9.83386 -9.63653 -9.31873 -8.88322 -8.56329 -8.35698 -7.97811 -6.05333 -4.11239 0.95259 1.46676 2.08046 2.28335 2.48720 2.73907 3.11910 3.30530 3.34662 3.38379 3.89970 4.01338 4.10668 4.25471 4.36554 4.41790 4.66800 4.84034 4.88571 5.11136 5.18200 5.19344 5.25478 5.39081 5.43686 5.59605 5.73605 5.81701 5.83753 6.01151 6.06679 6.08655 6.25852 6.29867 6.31111 6.44841 6.51380 6.62616 6.76210 6.85124 6.95023 7.19436 7.29480 7.56796 7.62779 7.68039 7.92456 8.04222 8.36118 8.74294 8.91808 9.53763 11.00947 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.020389 B = 0.002998 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.955240 B = 9336.851057 C = 9598.322093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.163 4.163 3 C 0.138 3.862 4 N -0.473 5.473 5 C 0.231 3.769 6 C 0.046 3.954 7 C 0.043 3.957 8 N -0.489 5.489 9 C 0.202 3.798 10 N -0.571 5.571 11 H 0.416 0.584 12 N -0.254 5.254 13 N -0.307 5.307 14 C 0.382 3.618 15 N -0.465 5.465 16 C 0.071 3.929 17 C -0.115 4.115 18 C -0.114 4.114 19 C 0.058 3.942 20 H 0.035 0.965 21 C -0.515 4.515 22 H 0.056 0.944 23 C 0.065 3.935 24 N -0.890 5.890 25 Si 0.892 3.108 26 H -0.277 1.277 27 H -0.287 1.287 28 H -0.276 1.276 29 C 0.081 3.919 30 H 0.091 0.909 31 H 0.114 0.886 32 H 0.132 0.868 33 H 0.116 0.884 34 H 0.082 0.918 35 H 0.185 0.815 36 H 0.215 0.785 37 H 0.056 0.944 38 H 0.045 0.955 39 H 0.056 0.944 40 H 0.063 0.937 41 H 0.036 0.964 42 H 0.096 0.904 43 H 0.261 0.739 44 H 0.047 0.953 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.930 12.394 0.784 20.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.182 4.182 3 C 0.015 3.985 4 N -0.168 5.168 5 C -0.033 4.033 6 C -0.071 4.071 7 C -0.109 4.109 8 N -0.208 5.208 9 C -0.081 4.081 10 N -0.179 5.179 11 H 0.257 0.743 12 N -0.096 5.096 13 N -0.151 5.151 14 C 0.027 3.973 15 N -0.191 5.191 16 C -0.056 4.056 17 C -0.153 4.153 18 C -0.152 4.152 19 C 0.039 3.961 20 H 0.053 0.947 21 C -0.554 4.554 22 H 0.074 0.926 23 C -0.137 4.137 24 N -0.528 5.528 25 Si 0.720 3.280 26 H -0.203 1.203 27 H -0.213 1.213 28 H -0.202 1.202 29 C -0.044 4.044 30 H 0.109 0.891 31 H 0.133 0.867 32 H 0.150 0.850 33 H 0.134 0.866 34 H 0.101 0.899 35 H 0.202 0.798 36 H 0.231 0.769 37 H 0.075 0.925 38 H 0.063 0.937 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.055 0.945 42 H 0.114 0.886 43 H 0.071 0.929 44 H 0.065 0.935 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -16.514 12.632 2.057 20.893 hybrid contribution 0.310 -1.329 -1.526 2.047 sum -16.204 11.303 0.531 19.764 Atomic orbital electron populations 1.23884 0.95330 1.02324 1.00175 1.23295 0.96128 0.98928 0.99822 1.20965 0.91660 0.96408 0.89418 1.46448 1.13380 1.44788 1.12166 1.21265 0.96243 1.02943 0.82857 1.17873 0.83034 1.06936 0.99211 1.22543 0.94707 0.97130 0.96525 1.70279 1.04662 1.24592 1.21248 1.25147 0.98245 0.94675 0.90059 1.43693 1.09166 1.40347 1.24736 0.74315 1.74440 0.97622 1.13426 1.24104 1.74782 1.22208 1.16032 1.02071 1.22815 0.84073 0.96546 0.93828 1.58981 1.33262 1.10693 1.16129 1.22174 0.95210 0.93091 0.95130 1.21713 0.99874 0.98629 0.95125 1.21720 0.96858 0.94329 1.02327 1.18706 0.94793 0.91957 0.90646 0.94717 1.21046 1.27955 1.13316 0.93089 0.92550 1.24904 0.96523 0.97398 0.94826 1.69866 1.43505 1.38098 1.01341 0.86648 0.80970 0.81973 0.78380 1.20252 1.21314 1.20192 1.22452 0.93459 0.89188 0.99286 0.89100 0.86748 0.84985 0.86626 0.89945 0.79811 0.76851 0.92518 0.93682 0.92530 0.91840 0.94482 0.88613 0.92915 0.93486 0.91777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.19 13.54 29.01 0.39 -0.80 16 2 C -0.16 -1.54 9.82 -36.03 -0.35 -1.90 16 3 C 0.14 1.37 6.07 -5.19 -0.03 1.34 16 4 N -0.47 -6.63 2.82 -116.04 -0.33 -6.95 16 5 C 0.23 3.44 7.92 -153.75 -1.22 2.22 16 6 C 0.05 0.55 6.94 -82.17 -0.57 -0.02 16 7 C 0.04 0.52 11.85 -17.41 -0.21 0.32 16 8 N -0.49 -5.51 11.21 -14.32 -0.16 -5.67 16 9 C 0.20 1.58 13.03 -90.21 -1.18 0.41 16 10 N -0.57 -4.84 5.70 -10.69 -0.06 -4.90 16 11 H 0.42 2.63 4.50 -40.82 -0.18 2.44 16 12 N -0.25 -4.55 12.23 32.51 0.40 -4.16 16 13 N -0.31 -5.96 11.65 30.34 0.35 -5.61 16 14 C 0.38 6.64 6.72 -318.69 -2.14 4.49 16 15 N -0.46 -8.27 4.67 -174.50 -0.81 -9.08 16 16 C 0.07 1.16 5.39 -3.83 -0.02 1.14 16 17 C -0.12 -2.01 6.09 -26.65 -0.16 -2.17 16 18 C -0.11 -2.51 5.03 -26.61 -0.13 -2.65 16 19 C 0.06 1.37 2.26 -91.69 -0.21 1.16 16 20 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 21 C -0.52 -13.69 8.56 -34.44 -0.29 -13.99 16 22 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 23 C 0.07 1.74 5.30 -17.82 -0.09 1.65 16 24 N -0.89 -24.34 11.36 55.43 0.63 -23.71 16 25 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 28 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 29 C 0.08 1.72 4.30 -3.83 -0.02 1.70 16 30 H 0.09 0.37 6.56 -52.49 -0.34 0.02 16 31 H 0.11 0.69 8.06 -52.49 -0.42 0.27 16 32 H 0.13 1.56 8.06 -52.48 -0.42 1.14 16 33 H 0.12 1.12 8.14 -51.93 -0.42 0.69 16 34 H 0.08 0.60 5.67 -51.92 -0.29 0.31 16 35 H 0.18 2.08 8.06 -52.49 -0.42 1.66 16 36 H 0.22 0.65 8.06 -52.49 -0.42 0.23 16 37 H 0.06 0.80 8.10 -51.93 -0.42 0.38 16 38 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.04 0.83 8.14 -51.92 -0.42 0.41 16 42 H 0.10 2.36 6.16 -51.93 -0.32 2.04 16 43 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 44 H 0.05 1.05 8.05 -51.93 -0.42 0.63 16 45 H 0.06 1.40 8.10 -51.93 -0.42 0.98 16 LS Contribution 367.62 15.07 5.54 5.54 Total: -1.00 -31.48 367.62 -11.87 -43.35 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -6.17 Total: 2.41 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: -6.23 Total: -7.09 kcal Atomic # 7 Polarization: -60.09 SS G_CDS: 0.02 Total: -60.08 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.48 -11.87 -43.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340540525.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 213.316 kcal (2) G-P(sol) polarization free energy of solvation -31.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 181.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 169.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds