Wall clock time and date at job start Tue Mar 31 2020 16:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 120.00096 * 2 1 4 4 H 1.48496 * 109.46899 * 270.00011 * 3 2 1 5 5 H 1.48501 * 109.46791 * 29.99679 * 3 2 1 6 6 H 1.48498 * 109.46948 * 149.99731 * 3 2 1 7 7 C 1.37874 * 120.00049 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00431 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00193 * 0.02562 * 7 2 1 10 10 C 1.53037 * 109.46209 * 179.97438 * 9 7 2 11 11 C 1.53190 * 109.31385 * 178.63092 * 10 9 7 12 12 N 1.46930 * 108.77536 * 54.63411 * 11 10 9 13 13 C 1.34774 * 120.62969 * 126.37014 * 12 11 10 14 14 O 1.21584 * 120.00136 * 185.22154 * 13 12 11 15 15 N 1.34780 * 119.99841 * 5.22938 * 13 12 11 16 16 C 1.46499 * 119.99543 * 175.01852 * 15 13 12 17 17 C 1.50706 * 109.46878 * 179.97438 * 16 15 13 18 18 C 1.38245 * 120.03367 * 89.99646 * 17 16 15 19 19 C 1.38111 * 119.93722 * 180.22821 * 18 17 16 20 20 C 1.38493 * 120.20791 * 359.51860 * 19 18 17 21 21 C 1.38214 * 119.85598 * 0.48113 * 20 19 18 22 22 C 1.38106 * 120.03120 * 269.97703 * 17 16 15 23 23 C 1.51370 * 109.76016 * 179.71276 * 21 20 19 24 24 C 1.54342 * 105.16958 * 342.81690 * 23 21 20 25 25 C 1.51378 * 130.38699 * 180.13569 * 20 19 18 26 26 C 1.46926 * 118.73833 * 306.64486 * 12 11 10 27 27 C 1.52765 * 109.00854 * 53.30901 * 26 12 11 28 28 H 0.97003 * 120.00466 * 0.02562 * 1 2 3 29 29 H 1.08992 * 109.46066 * 299.97535 * 9 7 2 30 30 H 1.08999 * 109.50049 * 58.67872 * 10 9 7 31 31 H 1.09000 * 109.52485 * 298.59779 * 10 9 7 32 32 H 1.09001 * 109.58537 * 294.84607 * 11 10 9 33 33 H 1.08999 * 109.70862 * 174.49328 * 11 10 9 34 34 H 0.96994 * 120.00552 * 355.01462 * 15 13 12 35 35 H 1.09002 * 109.47719 * 59.99627 * 16 15 13 36 36 H 1.09000 * 109.47151 * 299.99370 * 16 15 13 37 37 H 1.08007 * 120.03403 * 359.95632 * 18 17 16 38 38 H 1.07997 * 119.89214 * 179.72487 * 19 18 17 39 39 H 1.08004 * 119.89066 * 0.02562 * 22 17 16 40 40 H 1.08997 * 110.30380 * 101.74471 * 23 21 20 41 41 H 1.09005 * 110.29882 * 223.89531 * 23 21 20 42 42 H 1.09003 * 110.82645 * 268.11993 * 24 23 21 43 43 H 1.09003 * 110.98992 * 144.65033 * 24 23 21 44 44 H 1.09000 * 110.30348 * 316.44062 * 25 20 19 45 45 H 1.08999 * 110.30477 * 78.58890 * 25 20 19 46 46 H 1.08996 * 109.58318 * 173.14384 * 26 12 11 47 47 H 1.09005 * 109.58408 * 293.56858 * 26 12 11 48 48 H 1.08999 * 109.56472 * 185.55080 * 27 26 12 49 49 H 1.08998 * 109.35644 * 65.49687 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2457 -3.6622 0.0005 11 6 1.4767 -4.9866 0.0351 12 7 0.5225 -5.0087 -1.0820 13 6 0.5124 -6.0344 -1.9563 14 8 -0.2156 -5.9966 -2.9294 15 7 1.3091 -7.1020 -1.7517 16 6 1.2197 -8.2635 -2.6401 17 6 2.2094 -9.3108 -2.1988 18 6 1.8341 -10.2745 -1.2813 19 6 2.7441 -11.2305 -0.8747 20 6 4.0293 -11.2333 -1.3906 21 6 4.4046 -10.2699 -2.3079 22 6 3.4920 -9.3091 -2.7108 23 6 5.8480 -10.4822 -2.7115 24 6 6.4404 -11.4025 -1.6233 25 6 5.1949 -12.1591 -1.1152 26 6 -0.4163 -3.8884 -1.2313 27 6 0.3702 -2.5790 -1.2485 28 1 -0.4851 0.8400 -0.0004 29 1 0.6244 -2.5568 0.8905 30 1 2.8881 -3.5915 0.8783 31 1 2.8562 -3.6194 -0.9015 32 1 0.9371 -5.0713 0.9784 33 1 2.1736 -5.8190 -0.0632 34 1 1.9417 -7.1014 -1.0165 35 1 1.4459 -7.9580 -3.6617 36 1 0.2115 -8.6756 -2.5990 37 1 0.8315 -10.2771 -0.8796 38 1 2.4515 -11.9803 -0.1546 39 1 3.7845 -8.5559 -3.4274 40 1 5.9007 -10.9666 -3.6865 41 1 6.3788 -9.5303 -2.7320 42 1 6.8908 -10.8158 -0.8226 43 1 7.1667 -12.0943 -2.0500 44 1 5.2798 -12.3524 -0.0458 45 1 5.0719 -13.0947 -1.6608 46 1 -0.9664 -3.9949 -2.1663 47 1 -1.1135 -3.8818 -0.3934 48 1 -0.3223 -1.7373 -1.2597 49 1 0.9979 -2.5462 -2.1390 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342083101.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:05:11 Heat of formation + Delta-G solvation = -15.423981 kcal Electronic energy + Delta-G solvation = -27436.063236 eV Core-core repulsion = 23747.967204 eV Total energy + Delta-G solvation = -3688.096032 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.52531 -39.80345 -37.17093 -36.37822 -34.21872 -33.45227 -31.77349 -31.03889 -30.33743 -29.45413 -27.86324 -26.30363 -25.16534 -23.00859 -22.75948 -22.11145 -21.13569 -20.49780 -20.17875 -18.86203 -17.69982 -16.44001 -16.32907 -16.12658 -15.91987 -15.41200 -15.03807 -14.94083 -14.55215 -14.05832 -13.69893 -13.54050 -13.45802 -13.21939 -13.06114 -12.93778 -12.81551 -12.61888 -12.47527 -12.04222 -11.95039 -11.78984 -11.54657 -11.42320 -11.23039 -11.09659 -10.99454 -10.91940 -10.64554 -10.40758 -10.03915 -9.78641 -9.53455 -9.16899 -9.03634 -8.94354 -8.86059 -8.71306 -8.34974 -7.85745 -6.00033 -4.06721 0.97748 1.14317 3.03236 3.29913 3.36953 3.39350 3.54794 3.59817 4.04722 4.22119 4.31944 4.42586 4.53397 4.63267 4.73996 4.78016 4.93881 5.20340 5.28508 5.29656 5.32473 5.36568 5.40543 5.44349 5.47662 5.58557 5.62142 5.78526 5.78945 5.83021 5.88656 5.93265 6.08351 6.13992 6.29491 6.36548 6.38550 6.45632 6.52522 6.63952 6.66289 6.73863 6.84777 7.00816 7.18097 7.27498 7.52624 7.73306 7.95676 8.08636 8.34637 8.42472 8.96419 8.98175 9.58192 11.05335 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.017793 B = 0.002372 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.303750 B =11801.990996 C =12763.512348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.513 4.513 8 H 0.054 0.946 9 C 0.050 3.950 10 C -0.123 4.123 11 C 0.114 3.886 12 N -0.618 5.618 13 C 0.705 3.295 14 O -0.601 6.601 15 N -0.749 5.749 16 C 0.183 3.817 17 C -0.103 4.103 18 C -0.099 4.099 19 C -0.110 4.110 20 C -0.094 4.094 21 C -0.100 4.100 22 C -0.086 4.086 23 C -0.083 4.083 24 C -0.121 4.121 25 C -0.083 4.083 26 C 0.127 3.873 27 C -0.124 4.124 28 H 0.260 0.740 29 H 0.027 0.973 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.396 0.604 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.126 0.874 38 H 0.121 0.879 39 H 0.123 0.877 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.074 0.926 45 H 0.079 0.921 46 H 0.076 0.924 47 H 0.056 0.944 48 H 0.104 0.896 49 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.735 -24.627 -1.518 26.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.551 4.551 8 H 0.072 0.928 9 C 0.031 3.969 10 C -0.162 4.162 11 C -0.010 4.010 12 N -0.354 5.354 13 C 0.406 3.594 14 O -0.480 6.480 15 N -0.408 5.408 16 C 0.059 3.941 17 C -0.104 4.104 18 C -0.118 4.118 19 C -0.128 4.128 20 C -0.094 4.094 21 C -0.100 4.100 22 C -0.105 4.105 23 C -0.120 4.120 24 C -0.159 4.159 25 C -0.120 4.120 26 C 0.005 3.995 27 C -0.163 4.163 28 H 0.070 0.930 29 H 0.045 0.955 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.232 0.768 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.144 0.856 38 H 0.139 0.861 39 H 0.141 0.859 40 H 0.098 0.902 41 H 0.095 0.905 42 H 0.091 0.909 43 H 0.095 0.905 44 H 0.093 0.907 45 H 0.098 0.902 46 H 0.095 0.905 47 H 0.074 0.926 48 H 0.122 0.878 49 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 8.015 -24.457 -2.217 25.832 hybrid contribution 0.774 0.958 0.389 1.292 sum 8.789 -23.499 -1.828 25.155 Atomic orbital electron populations 1.69842 1.05839 1.26461 1.50733 1.24962 0.94863 0.99049 0.95114 0.86622 0.79846 0.83608 0.78075 1.20746 1.21256 1.20015 1.21182 0.92843 0.90612 1.50471 0.92790 1.18621 0.92571 0.91501 0.94194 1.22005 0.98941 0.94345 1.00871 1.21702 0.91167 0.98903 0.89193 1.47449 1.38183 1.21370 1.28404 1.15862 0.80748 0.79930 0.82814 1.90863 1.45926 1.81085 1.30171 1.45330 1.43454 1.16727 1.35291 1.19920 0.97275 0.83164 0.93789 1.19810 0.94661 0.97301 0.98597 1.21006 0.99633 0.94442 0.96708 1.20607 0.92402 0.99303 1.00491 1.20641 0.94697 0.96867 0.97204 1.20573 0.96068 0.95686 0.97696 1.20591 0.92145 0.97935 0.99816 1.21055 0.91369 1.00438 0.99160 1.22297 0.96908 0.98267 0.98380 1.21066 0.91690 0.97525 1.01740 1.21679 0.90948 0.85667 1.01237 1.21950 1.00126 0.94985 0.99197 0.92957 0.95482 0.92198 0.92933 0.91962 0.92345 0.76783 0.90964 0.91034 0.85569 0.86137 0.85916 0.90221 0.90544 0.90854 0.90542 0.90690 0.90246 0.90539 0.92596 0.87828 0.94395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.92 11.30 55.43 0.63 -24.29 16 2 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 3 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.51 -13.75 8.56 -34.44 -0.29 -14.04 16 8 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 9 C 0.05 1.19 2.07 -91.73 -0.19 1.00 16 10 C -0.12 -2.42 5.30 -26.61 -0.14 -2.56 16 11 C 0.11 1.87 6.39 -3.71 -0.02 1.85 16 12 N -0.62 -11.52 2.98 -178.76 -0.53 -12.05 16 13 C 0.70 13.03 8.30 -86.92 -0.72 12.31 16 14 O -0.60 -13.13 15.77 5.29 0.08 -13.05 16 15 N -0.75 -10.63 5.46 -66.41 -0.36 -10.99 16 16 C 0.18 2.24 5.81 -5.19 -0.03 2.21 16 17 C -0.10 -1.08 5.24 -104.66 -0.55 -1.63 16 18 C -0.10 -0.94 9.70 -39.63 -0.38 -1.33 16 19 C -0.11 -0.97 10.04 -39.53 -0.40 -1.36 16 20 C -0.09 -0.83 6.14 -104.20 -0.64 -1.47 16 21 C -0.10 -0.94 6.14 -104.21 -0.64 -1.58 16 22 C -0.09 -0.88 9.70 -39.53 -0.38 -1.26 16 23 C -0.08 -0.59 6.77 -26.85 -0.18 -0.78 16 24 C -0.12 -0.71 7.08 -25.33 -0.18 -0.89 16 25 C -0.08 -0.54 6.77 -26.85 -0.18 -0.72 16 26 C 0.13 2.61 6.41 -3.93 -0.03 2.59 16 27 C -0.12 -2.92 5.14 -26.83 -0.14 -3.06 16 28 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 29 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.06 0.79 5.64 -51.93 -0.29 0.49 16 34 H 0.40 4.98 5.95 -40.82 -0.24 4.74 16 35 H 0.07 0.94 8.09 -51.93 -0.42 0.52 16 36 H 0.07 0.88 8.09 -51.93 -0.42 0.46 16 37 H 0.13 1.06 8.06 -52.48 -0.42 0.64 16 38 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 39 H 0.12 1.19 8.06 -52.48 -0.42 0.76 16 40 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.08 1.62 6.99 -51.93 -0.36 1.26 16 47 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 48 H 0.10 2.71 6.03 -51.93 -0.31 2.39 16 49 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 385.93 15.07 5.82 5.82 Total: -1.00 -30.93 385.93 -12.52 -43.44 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -7.94 Total: 4.21 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: -5.19 Total: -9.15 kcal Atomic # 7 Polarization: -47.06 SS G_CDS: -0.27 Total: -47.33 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: 0.08 Total: -13.05 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -30.93 -12.52 -43.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342083101.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.020 kcal (2) G-P(sol) polarization free energy of solvation -30.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds