Wall clock time and date at job start Tue Mar 31 2020 15:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50700 * 119.99801 * 2 1 4 4 N 1.46504 * 109.46898 * 125.00648 * 3 2 1 5 5 C 1.37468 * 127.18117 * 84.28380 * 4 3 2 6 6 C 1.47994 * 126.47330 * 359.96622 * 5 4 3 7 7 C 1.41017 * 126.25117 * 344.71549 * 6 5 4 8 8 N 1.30636 * 108.08066 * 179.97438 * 7 6 5 9 9 N 1.39999 * 108.58750 * 0.02562 * 8 7 6 10 10 C 1.46504 * 125.86582 * 180.02562 * 9 8 7 11 11 C 1.50697 * 109.47247 * 305.02011 * 10 9 8 12 12 H 1.08002 * 120.00114 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00086 * 180.02562 * 11 10 9 14 14 N 1.31515 * 119.99783 * 0.27783 * 13 11 10 15 15 Si 1.86801 * 119.99971 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47356 * 0.02562 * 15 13 11 17 17 H 1.48496 * 109.46874 * 120.00062 * 15 13 11 18 18 H 1.48501 * 109.47112 * 239.99909 * 15 13 11 19 19 C 1.34819 * 108.26137 * 0.25899 * 9 8 7 20 20 N 1.31212 * 107.05884 * 180.23014 * 5 4 3 21 21 N 1.28512 * 109.95755 * 359.62021 * 20 5 4 22 22 C 1.31201 * 110.10467 * 0.39370 * 21 20 5 23 23 N 1.38576 * 126.38147 * 179.78538 * 22 21 20 24 24 C 1.48530 * 111.00284 * 242.57580 * 23 22 21 25 25 C 1.54938 * 103.23035 * 159.71820 * 24 23 22 26 26 C 1.54592 * 102.92134 * 322.58986 * 25 24 23 27 27 C 1.47905 * 111.00262 * 359.97404 * 23 22 21 28 28 H 1.08005 * 119.99894 * 359.97438 * 1 2 3 29 29 H 1.07996 * 120.00314 * 179.97438 * 1 2 3 30 30 H 1.07999 * 119.99473 * 180.02562 * 2 1 3 31 31 H 1.09002 * 109.47209 * 5.00940 * 3 2 1 32 32 H 1.08998 * 109.47361 * 245.00316 * 3 2 1 33 33 H 1.08003 * 125.95949 * 359.97438 * 7 6 5 34 34 H 1.08998 * 109.46824 * 185.02067 * 10 9 8 35 35 H 1.08994 * 109.47271 * 65.02469 * 10 9 8 36 36 H 0.96998 * 120.00279 * 359.72263 * 14 13 11 37 37 H 1.07996 * 126.20868 * 179.70113 * 19 9 8 38 38 H 1.08997 * 110.67204 * 278.15944 * 24 23 22 39 39 H 1.09007 * 110.66350 * 41.28685 * 24 23 22 40 40 H 1.08995 * 110.72612 * 204.23045 * 25 24 23 41 41 H 1.09004 * 110.71859 * 80.94695 * 25 24 23 42 42 H 1.08995 * 110.31357 * 263.03749 * 26 25 24 43 43 H 1.09009 * 110.30755 * 140.87010 * 26 25 24 44 44 H 1.08993 * 109.91216 * 333.51173 * 27 23 22 45 45 H 1.08998 * 109.91583 * 94.80260 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 4.2611 0.8012 1.1775 6 6 4.9555 0.0853 0.0841 7 6 4.3572 -0.4435 -1.0782 8 7 5.2941 -0.9985 -1.7998 9 7 6.5170 -0.8492 -1.1348 10 6 7.8164 -1.3319 -1.6090 11 6 7.7309 -2.8097 -1.8911 12 1 6.8016 -3.3369 -1.7327 13 6 8.8392 -3.4892 -2.3505 14 7 9.9725 -2.8486 -2.5372 15 14 8.7333 -5.3212 -2.6996 16 1 7.3597 -5.8027 -2.4051 17 1 9.0493 -5.5718 -4.1287 18 1 9.7065 -6.0454 -1.8430 19 6 6.2925 -0.1894 0.0192 20 7 4.7368 1.0442 2.3760 21 7 3.8683 1.6888 3.0702 22 6 2.7829 1.8893 2.3610 23 7 1.6363 2.5448 2.7806 24 6 0.4673 1.6286 2.7754 25 6 -0.5345 2.3267 3.7292 26 6 0.3833 2.9099 4.8280 27 6 1.7747 3.0141 4.1763 28 1 -0.5400 0.9354 0.0004 29 1 -0.5400 -0.9352 -0.0004 30 1 1.8499 -0.9354 -0.0004 31 1 1.3585 2.1317 0.0897 32 1 2.6212 1.4027 -0.9314 33 1 3.3075 -0.3977 -1.3282 34 1 8.5721 -1.1511 -0.8445 35 1 8.0895 -0.8029 -2.5219 36 1 10.0276 -1.8974 -2.3556 37 1 7.0350 0.0760 0.7572 38 1 0.0488 1.5444 1.7725 39 1 0.7456 0.6477 3.1609 40 1 -1.2317 1.6038 4.1527 41 1 -1.0697 3.1225 3.2111 42 1 0.4173 2.2403 5.6874 43 1 0.0321 3.8967 5.1299 44 1 2.4837 2.3828 4.7117 45 1 2.1135 4.0500 4.1879 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001356186326.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:19:39 Heat of formation + Delta-G solvation = 189.431629 kcal Electronic energy + Delta-G solvation = -27613.680608 eV Core-core repulsion = 23863.220189 eV Total energy + Delta-G solvation = -3750.460419 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.171 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.81620 -40.61541 -39.12197 -36.47652 -34.21003 -33.09436 -32.79040 -31.64636 -30.53665 -29.36915 -28.05489 -27.00464 -26.64509 -23.60832 -23.06981 -22.50110 -21.30632 -20.92214 -20.83545 -19.86410 -19.54514 -17.84310 -17.26233 -16.52788 -16.41427 -16.19919 -15.83834 -15.25071 -14.65593 -14.58435 -14.11265 -13.94494 -13.82135 -13.63770 -13.47946 -13.00607 -12.76452 -12.66588 -12.51087 -12.36940 -11.94718 -11.92326 -11.80235 -11.58024 -11.33399 -11.24208 -10.94285 -10.81627 -10.61220 -10.32894 -10.23261 -10.15707 -9.96189 -9.83242 -9.42982 -8.93601 -8.69104 -8.55115 -7.53440 -6.65483 -4.40526 1.48041 1.66895 2.37179 2.46126 2.73699 3.19435 3.34814 3.37176 3.51952 3.53421 3.61048 4.14193 4.24732 4.33392 4.35049 4.44124 4.58128 4.63041 4.80065 4.92520 5.01093 5.02853 5.07457 5.10769 5.13280 5.23093 5.27697 5.41053 5.44075 5.48399 5.55885 5.60824 5.69535 5.80932 5.85552 5.94141 6.11111 6.18279 6.26771 6.35432 6.44131 6.58015 6.59476 6.92410 7.16513 7.48951 7.57651 8.21345 8.25057 8.52624 8.91493 9.27713 10.72718 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.023060 B = 0.002614 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.921350 B =10708.632595 C =11320.845688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.184 4.184 3 C 0.135 3.865 4 N -0.475 5.475 5 C 0.296 3.704 6 C -0.209 4.209 7 C 0.034 3.966 8 N -0.268 5.268 9 N -0.314 5.314 10 C 0.243 3.757 11 C -0.611 4.611 12 H 0.066 0.934 13 C 0.025 3.975 14 N -0.903 5.903 15 Si 1.082 2.918 16 H -0.287 1.287 17 H -0.283 1.283 18 H -0.284 1.284 19 C 0.110 3.890 20 N -0.294 5.294 21 N -0.318 5.318 22 C 0.337 3.663 23 N -0.435 5.435 24 C 0.031 3.969 25 C -0.122 4.122 26 C -0.131 4.131 27 C 0.047 3.953 28 H 0.102 0.898 29 H 0.108 0.892 30 H 0.123 0.877 31 H 0.102 0.898 32 H 0.108 0.892 33 H 0.176 0.824 34 H 0.049 0.951 35 H 0.040 0.960 36 H 0.268 0.732 37 H 0.179 0.821 38 H 0.092 0.908 39 H 0.055 0.945 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.072 0.928 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.663 11.096 9.472 26.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.202 4.202 3 C 0.012 3.988 4 N -0.170 5.170 5 C 0.030 3.970 6 C -0.225 4.225 7 C -0.154 4.154 8 N -0.089 5.089 9 N -0.091 5.091 10 C 0.126 3.874 11 C -0.649 4.649 12 H 0.084 0.916 13 C -0.180 4.180 14 N -0.538 5.538 15 Si 0.909 3.091 16 H -0.213 1.213 17 H -0.210 1.210 18 H -0.210 1.210 19 C -0.045 4.045 20 N -0.133 5.133 21 N -0.162 5.162 22 C -0.020 4.020 23 N -0.159 5.159 24 C -0.096 4.096 25 C -0.160 4.160 26 C -0.170 4.170 27 C -0.080 4.080 28 H 0.120 0.880 29 H 0.126 0.874 30 H 0.141 0.859 31 H 0.120 0.880 32 H 0.126 0.874 33 H 0.193 0.807 34 H 0.067 0.933 35 H 0.058 0.942 36 H 0.079 0.921 37 H 0.197 0.803 38 H 0.110 0.890 39 H 0.074 0.926 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.091 0.909 43 H 0.096 0.904 44 H 0.097 0.903 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -20.466 9.591 8.621 24.190 hybrid contribution -1.833 1.212 0.606 2.279 sum -22.298 10.803 9.228 26.440 Atomic orbital electron populations 1.23979 0.95414 1.02570 0.98052 1.23292 0.96509 0.98547 1.01894 1.21046 0.91967 0.97199 0.88561 1.46065 1.14096 1.44979 1.11854 1.21822 0.82107 0.98277 0.94772 1.17192 0.92584 1.15768 0.96910 1.23935 0.99378 0.99152 0.92922 1.77351 0.89427 1.21100 1.21013 1.49237 1.08430 1.38095 1.13368 1.19920 0.74320 0.97225 0.95970 1.22110 1.00844 0.91756 1.50178 0.91621 1.25937 0.91639 1.07222 0.93243 1.70794 1.26568 1.11437 1.45008 0.83339 0.75471 0.73215 0.77037 1.21303 1.20958 1.20994 1.22545 0.96418 0.94826 0.90705 1.74337 1.22773 1.15373 1.00811 1.74401 0.99529 1.17647 1.24589 1.22523 0.95951 0.99229 0.84251 1.61541 0.99368 1.30621 1.24367 1.23595 0.89779 0.94573 1.01613 1.22492 0.97133 1.00248 0.96129 1.22451 0.94195 1.02114 0.98214 1.22874 0.97904 1.02343 0.84909 0.87964 0.87379 0.85913 0.87975 0.87442 0.80737 0.93308 0.94217 0.92140 0.80348 0.89002 0.92643 0.90342 0.90285 0.90885 0.90402 0.90290 0.89385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.05 12.71 29.01 0.37 -0.68 16 2 C -0.18 -1.62 8.34 -36.03 -0.30 -1.92 16 3 C 0.13 1.34 4.98 -5.19 -0.03 1.32 16 4 N -0.48 -6.58 2.82 -115.89 -0.33 -6.91 16 5 C 0.30 5.03 7.91 -153.84 -1.22 3.81 16 6 C -0.21 -3.71 6.05 -105.42 -0.64 -4.35 16 7 C 0.03 0.58 10.61 -17.01 -0.18 0.40 16 8 N -0.27 -5.72 12.36 30.83 0.38 -5.34 16 9 N -0.31 -6.90 3.66 -62.23 -0.23 -7.12 16 10 C 0.24 5.91 5.57 -5.19 -0.03 5.88 16 11 C -0.61 -16.68 9.23 -34.44 -0.32 -17.00 16 12 H 0.07 1.88 7.81 -52.49 -0.41 1.47 16 13 C 0.02 0.68 5.46 -17.82 -0.10 0.58 16 14 N -0.90 -25.83 13.65 55.43 0.76 -25.07 16 15 Si 1.08 24.62 29.90 -169.99 -5.08 19.54 16 16 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 17 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 18 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 19 C 0.11 2.11 11.40 -16.81 -0.19 1.92 16 20 N -0.29 -5.53 12.22 32.60 0.40 -5.13 16 21 N -0.32 -5.52 10.67 30.35 0.32 -5.19 16 22 C 0.34 4.84 7.04 -318.63 -2.24 2.60 16 23 N -0.43 -4.79 5.28 -170.50 -0.90 -5.69 16 24 C 0.03 0.26 5.82 -1.90 -0.01 0.25 16 25 C -0.12 -0.74 7.06 -24.87 -0.18 -0.91 16 26 C -0.13 -0.87 6.93 -25.38 -0.18 -1.04 16 27 C 0.05 0.45 6.47 -2.75 -0.02 0.44 16 28 H 0.10 0.50 7.02 -52.48 -0.37 0.13 16 29 H 0.11 0.61 8.06 -52.49 -0.42 0.19 16 30 H 0.12 1.28 7.26 -52.49 -0.38 0.90 16 31 H 0.10 0.84 7.22 -51.93 -0.37 0.46 16 32 H 0.11 1.05 6.57 -51.93 -0.34 0.71 16 33 H 0.18 2.35 4.72 -52.48 -0.25 2.10 16 34 H 0.05 1.15 7.93 -51.93 -0.41 0.74 16 35 H 0.04 1.00 8.01 -51.93 -0.42 0.58 16 36 H 0.27 7.48 7.22 -40.82 -0.29 7.19 16 37 H 0.18 3.06 8.06 -52.49 -0.42 2.63 16 38 H 0.09 0.66 4.17 -51.93 -0.22 0.44 16 39 H 0.06 0.55 8.00 -51.92 -0.42 0.14 16 40 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.08 0.41 8.14 -51.92 -0.42 -0.01 16 44 H 0.08 0.92 6.84 -51.93 -0.36 0.57 16 45 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 367.06 15.07 5.53 5.53 Total: -1.00 -32.81 367.06 -10.39 -43.20 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -5.99 Total: 0.89 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: -5.25 Total: -8.70 kcal Atomic # 7 Polarization: -60.87 SS G_CDS: 0.40 Total: -60.46 kcal Atomic # 14 Polarization: 24.62 SS G_CDS: -5.08 Total: 19.54 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.81 -10.39 -43.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356186326.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 232.629 kcal (2) G-P(sol) polarization free energy of solvation -32.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 199.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 189.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds