Wall clock time and date at job start Tue Mar 31 2020 15:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46812 * 2 1 4 4 C 1.52999 * 109.47114 * 239.99813 * 2 1 3 5 5 C 1.50697 * 109.47122 * 174.99834 * 4 2 1 6 6 O 1.21277 * 120.00012 * 0.02562 * 5 4 2 7 7 N 1.34777 * 120.00192 * 180.02562 * 5 4 2 8 8 C 1.47070 * 136.05732 * 359.63417 * 7 5 4 9 9 C 1.53235 * 88.08437 * 207.20038 * 8 7 5 10 10 O 1.42902 * 114.01526 * 87.70911 * 9 8 7 11 11 C 1.50694 * 114.50593 * 220.45357 * 9 8 7 12 12 H 1.07998 * 119.99863 * 93.84722 * 11 9 8 13 13 C 1.37870 * 120.00210 * 273.84305 * 11 9 8 14 14 N 1.31518 * 120.00022 * 0.02562 * 13 11 9 15 15 Si 1.86797 * 120.00275 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47310 * 59.99820 * 15 13 11 17 17 H 1.48502 * 109.47624 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.47067 * 300.00308 * 15 13 11 19 19 C 1.47068 * 136.05982 * 179.97438 * 7 5 4 20 20 N 1.46498 * 109.47036 * 120.00065 * 2 1 3 21 21 C 1.34777 * 119.99828 * 274.72131 * 20 2 1 22 22 O 1.21513 * 119.99898 * 0.28095 * 21 20 2 23 23 O 1.34638 * 120.00235 * 180.27525 * 21 20 2 24 24 C 1.45195 * 117.00135 * 180.02562 * 23 21 20 25 25 C 1.52999 * 109.47224 * 60.00489 * 24 23 21 26 26 C 1.53005 * 109.47161 * 180.02562 * 24 23 21 27 27 C 1.53002 * 109.47089 * 299.99988 * 24 23 21 28 28 H 1.09003 * 109.47189 * 60.00254 * 1 2 3 29 29 H 1.09009 * 109.47238 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47293 * 300.00104 * 1 2 3 31 31 H 1.08997 * 109.47492 * 295.00122 * 4 2 1 32 32 H 1.09007 * 109.47243 * 54.99904 * 4 2 1 33 33 H 1.09001 * 113.46149 * 321.93323 * 8 7 5 34 34 H 1.08993 * 113.46913 * 92.36771 * 8 7 5 35 35 H 0.96702 * 113.99424 * 86.39147 * 10 9 8 36 36 H 0.96998 * 119.99898 * 180.02562 * 14 13 11 37 37 H 1.08995 * 113.47011 * 267.62880 * 19 7 5 38 38 H 1.08997 * 113.46433 * 38.06723 * 19 7 5 39 39 H 0.97001 * 120.00384 * 95.00578 * 20 2 1 40 40 H 1.08996 * 109.47509 * 59.99392 * 25 24 23 41 41 H 1.09006 * 109.47298 * 180.02562 * 25 24 23 42 42 H 1.09003 * 109.46856 * 299.99470 * 25 24 23 43 43 H 1.08995 * 109.47042 * 59.99563 * 26 24 23 44 44 H 1.08992 * 109.47205 * 180.02562 * 26 24 23 45 45 H 1.09001 * 109.46587 * 300.00252 * 26 24 23 46 46 H 1.09003 * 109.46840 * 60.00621 * 27 24 23 47 47 H 1.09006 * 109.47115 * 179.97438 * 27 24 23 48 48 H 1.08995 * 109.47291 * 299.99982 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5418 -0.6149 -1.3127 6 8 4.1450 -0.0211 -0.4441 7 7 4.2148 -1.1797 -2.3348 8 6 3.8639 -1.9590 -3.5316 9 6 5.2549 -2.5979 -3.4605 10 8 5.3189 -3.7615 -2.6336 11 6 5.9288 -2.7785 -4.7962 12 1 6.6048 -2.0221 -5.1667 13 6 5.6825 -3.9094 -5.5453 14 7 4.8590 -4.8304 -5.0945 15 14 6.5184 -4.1336 -7.2007 16 1 7.9917 -4.1406 -7.0145 17 1 6.0889 -5.4219 -7.8018 18 1 6.1388 -3.0163 -8.1023 19 6 5.6238 -1.2929 -2.7409 20 7 2.0183 -0.6906 1.1962 21 6 2.1523 -0.0169 2.3557 22 8 1.8633 1.1621 2.4103 23 8 2.6063 -0.6502 3.4537 24 6 2.7247 0.1377 4.6675 25 6 1.3515 0.6926 5.0514 26 6 3.2530 -0.7458 5.7996 27 6 3.6951 1.2967 4.4306 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.7516 -1.7715 -1.2056 32 1 1.6053 -0.2618 -2.1370 33 1 3.0531 -2.6682 -3.3653 34 1 3.7127 -1.3458 -4.4200 35 1 5.0859 -4.5816 -3.0900 36 1 4.6860 -5.6262 -5.6213 37 1 5.9458 -0.5007 -3.4167 38 1 6.3066 -1.4369 -1.9036 39 1 2.2491 -1.6318 1.1526 40 1 0.6602 -0.1331 5.2201 41 1 1.4405 1.2845 5.9624 42 1 0.9757 1.3221 4.2449 43 1 4.2313 -1.1408 5.5258 44 1 3.3414 -0.1544 6.7108 45 1 2.5620 -1.5717 5.9684 46 1 3.3192 1.9262 3.6241 47 1 3.7837 1.8885 5.3417 48 1 4.6734 0.9014 4.1572 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362675944.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:37 Heat of formation + Delta-G solvation = -136.339598 kcal Electronic energy + Delta-G solvation = -29228.441631 eV Core-core repulsion = 25091.960289 eV Total energy + Delta-G solvation = -4136.481341 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.69786 -39.68984 -38.16122 -37.06476 -35.28749 -34.08047 -34.03114 -32.23275 -31.35510 -29.30077 -27.50898 -27.45629 -27.40460 -25.23041 -25.07612 -23.20280 -21.05305 -20.18459 -19.94300 -18.40942 -18.01168 -17.47227 -16.69947 -16.33588 -15.96183 -15.68147 -15.44951 -15.05156 -14.65201 -14.49439 -14.32169 -14.14072 -13.61890 -13.38308 -13.18166 -12.97751 -12.74101 -12.59100 -12.34359 -12.24019 -12.16061 -11.97362 -11.92491 -11.85413 -11.68155 -11.59647 -11.47625 -11.30228 -11.08628 -11.04523 -10.99964 -10.53275 -10.34060 -10.30258 -9.92723 -9.66503 -9.23712 -9.01672 -8.80974 -8.43821 -7.87801 -6.44692 -4.55045 2.28456 3.05131 3.13028 3.16499 3.19212 3.21679 3.49504 4.14380 4.20573 4.65009 4.68920 4.70861 4.75711 4.83584 4.86183 5.19747 5.33463 5.35228 5.44426 5.46737 5.51338 5.56633 5.57997 5.62595 5.63990 5.69888 5.79969 5.88504 5.89676 5.98061 6.11086 6.17325 6.19507 6.29414 6.36986 6.46407 6.50865 6.59262 6.64589 6.65070 7.06797 7.58365 7.58825 7.76490 8.46740 8.50954 8.56159 8.73275 9.16544 9.44343 10.61924 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.023238 B = 0.002515 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.622210 B =11132.667565 C =11587.388307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.178 3.822 3 H 0.098 0.902 4 C -0.145 4.145 5 C 0.530 3.470 6 O -0.554 6.554 7 N -0.636 5.636 8 C 0.071 3.929 9 C 0.240 3.760 10 O -0.572 6.572 11 C -0.534 4.534 12 H 0.072 0.928 13 C 0.072 3.928 14 N -0.899 5.899 15 Si 0.909 3.091 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.273 1.273 19 C 0.107 3.893 20 N -0.693 5.693 21 C 0.659 3.341 22 O -0.574 6.574 23 O -0.366 6.366 24 C 0.136 3.864 25 C -0.182 4.182 26 C -0.141 4.141 27 C -0.183 4.183 28 H 0.070 0.930 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.098 0.902 32 H 0.108 0.892 33 H 0.064 0.936 34 H 0.081 0.919 35 H 0.394 0.606 36 H 0.275 0.725 37 H 0.084 0.916 38 H 0.065 0.935 39 H 0.403 0.597 40 H 0.057 0.943 41 H 0.067 0.933 42 H 0.088 0.912 43 H 0.067 0.933 44 H 0.078 0.922 45 H 0.065 0.935 46 H 0.089 0.911 47 H 0.066 0.934 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.912 5.869 12.301 16.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.074 3.926 3 H 0.116 0.884 4 C -0.186 4.186 5 C 0.319 3.681 6 O -0.433 6.433 7 N -0.369 5.369 8 C -0.052 4.052 9 C 0.198 3.802 10 O -0.385 6.385 11 C -0.572 4.572 12 H 0.090 0.910 13 C -0.130 4.130 14 N -0.539 5.539 15 Si 0.736 3.264 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.199 1.199 19 C -0.016 4.016 20 N -0.350 5.350 21 C 0.413 3.587 22 O -0.464 6.464 23 O -0.281 6.281 24 C 0.100 3.900 25 C -0.239 4.239 26 C -0.198 4.198 27 C -0.240 4.240 28 H 0.088 0.912 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.116 0.884 32 H 0.126 0.874 33 H 0.082 0.918 34 H 0.099 0.901 35 H 0.250 0.750 36 H 0.085 0.915 37 H 0.102 0.898 38 H 0.083 0.917 39 H 0.238 0.762 40 H 0.076 0.924 41 H 0.086 0.914 42 H 0.107 0.893 43 H 0.086 0.914 44 H 0.097 0.903 45 H 0.084 0.916 46 H 0.107 0.893 47 H 0.085 0.915 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.749 7.114 13.434 17.539 hybrid contribution 0.249 -1.013 -1.446 1.783 sum -8.500 6.101 11.988 15.912 Atomic orbital electron populations 1.22229 0.94714 1.02452 1.02865 1.20646 0.93109 0.97762 0.81110 0.88407 1.21969 0.93778 1.03536 0.99287 1.19924 0.88954 0.78205 0.81005 1.90691 1.70158 1.43612 1.38853 1.49737 1.11020 1.53044 1.23109 1.24157 1.03274 0.92819 0.84920 1.19488 0.89401 0.82964 0.88337 1.86047 1.91834 1.19035 1.41587 1.21394 1.28063 1.05982 1.01770 0.91010 1.25074 0.93974 0.95133 0.98850 1.69251 1.35272 1.10033 1.39380 0.86363 0.79981 0.77633 0.82409 1.19818 1.20970 1.19865 1.23314 0.82816 0.97899 0.97533 1.44614 1.69281 1.13969 1.07185 1.17926 0.76245 0.83621 0.80944 1.90848 1.55945 1.14690 1.84895 1.86301 1.79409 1.43790 1.18624 1.22005 0.96223 0.90893 0.80921 1.22505 0.95942 1.02062 1.03364 1.21853 1.02122 0.99884 0.95917 1.22505 0.99206 0.98462 1.03845 0.91153 0.92166 0.91724 0.88408 0.87421 0.91754 0.90097 0.74991 0.91507 0.89814 0.91682 0.76220 0.92370 0.91387 0.89344 0.91398 0.90332 0.91605 0.89258 0.91482 0.92063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 9.49 37.16 0.35 -1.37 16 2 C 0.18 2.39 2.14 -67.93 -0.15 2.25 16 3 H 0.10 1.56 7.39 -51.93 -0.38 1.17 16 4 C -0.15 -1.98 5.07 -27.88 -0.14 -2.12 16 5 C 0.53 10.01 7.94 -10.99 -0.09 9.93 16 6 O -0.55 -12.23 16.13 5.56 0.09 -12.14 16 7 N -0.64 -12.76 3.69 -185.37 -0.68 -13.44 16 8 C 0.07 1.44 7.83 -8.64 -0.07 1.38 16 9 C 0.24 5.57 1.57 -91.39 -0.14 5.42 16 10 O -0.57 -14.33 13.53 -35.23 -0.48 -14.81 16 11 C -0.53 -12.99 8.70 -34.45 -0.30 -13.29 16 12 H 0.07 1.70 7.81 -52.49 -0.41 1.29 16 13 C 0.07 1.74 5.39 -17.82 -0.10 1.65 16 14 N -0.90 -22.06 11.01 55.43 0.61 -21.45 16 15 Si 0.91 18.94 29.54 -169.99 -5.02 13.92 16 16 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 17 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 18 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 19 C 0.11 2.28 8.04 -8.50 -0.07 2.22 16 20 N -0.69 -10.09 4.22 -58.73 -0.25 -10.34 16 21 C 0.66 10.52 8.02 54.06 0.43 10.96 16 22 O -0.57 -9.94 11.54 -19.28 -0.22 -10.16 16 23 O -0.37 -5.44 9.94 -40.32 -0.40 -5.84 16 24 C 0.14 1.65 1.13 -90.62 -0.10 1.55 16 25 C -0.18 -1.97 8.37 37.16 0.31 -1.66 16 26 C -0.14 -1.29 8.85 37.16 0.33 -0.97 16 27 C -0.18 -2.28 8.37 37.16 0.31 -1.97 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 32 H 0.11 1.24 8.14 -51.93 -0.42 0.81 16 33 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.08 1.55 8.10 -51.93 -0.42 1.13 16 35 H 0.39 9.96 6.32 45.56 0.29 10.25 16 36 H 0.27 6.43 8.31 -40.82 -0.34 6.09 16 37 H 0.08 1.65 8.10 -51.93 -0.42 1.23 16 38 H 0.06 1.45 8.14 -51.93 -0.42 1.03 16 39 H 0.40 5.52 8.71 -40.82 -0.36 5.16 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.09 1.16 5.88 -51.93 -0.31 0.85 16 43 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.09 1.35 5.88 -51.93 -0.31 1.04 16 47 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 48 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 392.33 15.07 5.91 5.91 Total: -1.00 -29.43 392.33 -7.22 -36.66 By element: Atomic # 1 Polarization: 25.09 SS G_CDS: -7.37 Total: 17.73 kcal Atomic # 6 Polarization: 13.37 SS G_CDS: 0.59 Total: 13.96 kcal Atomic # 7 Polarization: -44.91 SS G_CDS: -0.32 Total: -45.23 kcal Atomic # 8 Polarization: -41.93 SS G_CDS: -1.01 Total: -42.94 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.02 Total: 13.92 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -29.43 -7.22 -36.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362675944.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.684 kcal (2) G-P(sol) polarization free energy of solvation -29.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds