Wall clock time and date at job start Tue Mar 31 2020 15:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52990 * 109.47366 * 2 1 4 4 C 1.53001 * 109.47166 * 239.99378 * 2 1 3 5 5 O 1.45207 * 109.46863 * 120.00297 * 2 1 3 6 6 C 1.34629 * 117.00383 * 59.99815 * 5 2 1 7 7 O 1.21515 * 119.99724 * 359.97438 * 6 5 2 8 8 N 1.34775 * 120.00395 * 180.02562 * 6 5 2 9 9 C 1.46500 * 120.00447 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.47030 * 180.02562 * 9 8 6 11 11 O 1.42898 * 109.45915 * 299.96770 * 10 9 8 12 12 C 1.53040 * 109.45437 * 180.02562 * 10 9 8 13 13 C 1.53199 * 109.31043 * 178.61247 * 12 10 9 14 14 N 1.46926 * 108.77327 * 54.63266 * 13 12 10 15 15 C 1.34777 * 120.63040 * 126.36855 * 14 13 12 16 16 O 1.21693 * 119.99985 * 5.31646 * 15 14 13 17 17 C 1.46371 * 120.00178 * 185.31356 * 15 14 13 18 18 H 1.08006 * 120.00055 * 353.80508 * 17 15 14 19 19 C 1.40054 * 120.00291 * 173.80580 * 17 15 14 20 20 N 1.30677 * 119.99601 * 359.97438 * 19 17 15 21 21 Si 1.86794 * 120.00321 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47077 * 180.02562 * 21 19 17 23 23 H 1.48509 * 109.46630 * 299.99826 * 21 19 17 24 24 H 1.48500 * 109.47431 * 59.99555 * 21 19 17 25 25 C 1.46929 * 118.73988 * 306.64148 * 14 13 12 26 26 C 1.52757 * 109.00628 * 53.31430 * 25 14 13 27 27 H 1.09004 * 109.47456 * 300.00198 * 1 2 3 28 28 H 1.09001 * 109.47234 * 60.00204 * 1 2 3 29 29 H 1.08996 * 109.47586 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47503 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47624 * 299.99720 * 3 2 1 32 32 H 1.08998 * 109.47491 * 60.00017 * 3 2 1 33 33 H 1.08996 * 109.47452 * 300.00798 * 4 2 1 34 34 H 1.09009 * 109.46462 * 60.00695 * 4 2 1 35 35 H 1.08999 * 109.47138 * 179.97438 * 4 2 1 36 36 H 0.97002 * 119.99347 * 0.02562 * 8 6 5 37 37 H 1.08997 * 109.46775 * 59.99583 * 9 8 6 38 38 H 1.08998 * 109.46957 * 300.00110 * 9 8 6 39 39 H 0.96705 * 113.99594 * 60.02904 * 11 10 9 40 40 H 1.09001 * 109.50256 * 58.66433 * 12 10 9 41 41 H 1.08996 * 109.50141 * 298.55907 * 12 10 9 42 42 H 1.08995 * 109.58639 * 294.84561 * 13 12 10 43 43 H 1.09000 * 109.58942 * 174.42043 * 13 12 10 44 44 H 0.96996 * 119.99903 * 180.02562 * 20 19 17 45 45 H 1.09001 * 109.58753 * 173.14245 * 25 14 13 46 46 H 1.08994 * 109.58811 * 293.57186 * 25 14 13 47 47 H 1.08996 * 109.56621 * 185.55263 * 26 25 14 48 48 H 1.09007 * 109.36456 * 65.49531 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2492 5 8 2.0139 -0.6846 1.1856 6 6 1.6522 -1.9723 1.3384 7 8 0.9507 -2.5094 0.5040 8 7 2.0670 -2.6655 2.4172 9 6 1.6729 -4.0666 2.5837 10 6 2.2721 -4.6142 3.8807 11 8 3.6970 -4.5245 3.8219 12 6 1.8607 -6.0781 4.0540 13 6 2.4906 -6.6330 5.3354 14 7 2.1180 -5.7642 6.4602 15 6 1.5404 -6.2792 7.5637 16 8 1.4108 -7.4839 7.6768 17 6 1.0691 -5.3895 8.6261 18 1 1.2728 -4.3301 8.5733 19 6 0.3540 -5.9118 9.7111 20 7 0.1071 -7.1935 9.7747 21 14 -0.2481 -4.7763 11.0665 22 1 -0.9721 -5.5699 12.0919 23 1 0.9132 -4.0974 11.6957 24 1 -1.1634 -3.7590 10.4900 25 6 2.3815 -4.3224 6.3566 26 6 1.7578 -3.7942 5.0661 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1301 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6766 -1.7490 -1.2492 34 1 1.6766 -0.2075 -2.1392 35 1 3.1300 -0.7210 -1.2494 36 1 2.6260 -2.2363 3.0837 37 1 2.0393 -4.6499 1.7390 38 1 0.5861 -4.1354 2.6286 39 1 4.0301 -3.6233 3.7121 40 1 2.2071 -6.6572 3.1980 41 1 0.7750 -6.1451 4.1238 42 1 3.5755 -6.6509 5.2313 43 1 2.1222 -7.6429 5.5161 44 1 -0.3885 -7.5552 10.5259 45 1 1.9410 -3.8082 7.2108 46 1 3.4572 -4.1480 6.3374 47 1 2.0309 -2.7478 4.9303 48 1 0.6730 -3.8827 5.1263 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362903792.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:22 Heat of formation + Delta-G solvation = -168.719797 kcal Electronic energy + Delta-G solvation = -29329.165633 eV Core-core repulsion = 25191.280181 eV Total energy + Delta-G solvation = -4137.885452 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.02492 -39.67321 -37.67214 -36.89192 -34.79963 -34.37132 -33.95899 -32.54225 -31.39576 -30.48578 -27.72178 -27.66289 -27.48355 -26.08325 -23.32820 -22.90408 -21.88677 -20.46596 -20.32642 -18.97274 -18.58098 -16.87391 -16.84242 -16.41899 -16.12426 -15.77215 -15.47236 -14.95801 -14.77455 -14.43799 -14.37183 -14.05965 -14.02813 -13.88151 -13.47179 -13.28342 -12.81025 -12.66403 -12.41600 -12.29848 -12.20306 -12.19246 -11.94036 -11.82672 -11.68255 -11.58631 -11.38584 -11.18435 -11.00873 -10.78456 -10.72557 -10.62804 -10.40307 -10.28398 -10.23876 -10.07704 -9.63596 -9.38177 -8.86651 -7.59313 -7.22061 -6.21354 -4.66306 1.93739 2.65882 3.13322 3.18755 3.20072 3.87704 4.06088 4.18314 4.40979 4.44931 4.45510 4.55387 4.59627 4.63864 4.85085 4.93494 5.15369 5.22972 5.25914 5.37760 5.42323 5.45860 5.52478 5.55866 5.62592 5.67395 5.69156 5.78368 5.90211 5.92652 5.99738 6.01320 6.07701 6.11285 6.16755 6.29143 6.41996 6.48245 6.57036 6.78651 7.16550 7.43513 7.58505 7.62753 8.12142 8.17713 8.34659 9.00345 9.43191 10.56371 10.74919 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.018729 B = 0.002617 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.645414 B =10697.623583 C =11581.876653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.137 3.863 3 C -0.141 4.141 4 C -0.184 4.184 5 O -0.366 6.366 6 C 0.651 3.349 7 O -0.567 6.567 8 N -0.708 5.708 9 C 0.112 3.888 10 C 0.129 3.871 11 O -0.545 6.545 12 C -0.115 4.115 13 C 0.127 3.873 14 N -0.641 5.641 15 C 0.560 3.440 16 O -0.578 6.578 17 C -0.546 4.546 18 H 0.072 0.928 19 C 0.088 3.912 20 N -0.768 5.768 21 Si 0.906 3.094 22 H -0.280 1.280 23 H -0.268 1.268 24 H -0.268 1.268 25 C 0.128 3.872 26 C -0.161 4.161 27 H 0.060 0.940 28 H 0.069 0.931 29 H 0.088 0.912 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.088 0.912 34 H 0.069 0.931 35 H 0.059 0.941 36 H 0.403 0.597 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.366 0.634 40 H 0.072 0.928 41 H 0.080 0.920 42 H 0.051 0.949 43 H 0.084 0.916 44 H 0.269 0.731 45 H 0.093 0.907 46 H 0.046 0.954 47 H 0.063 0.937 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.828 16.367 -18.135 24.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.100 3.900 3 C -0.198 4.198 4 C -0.241 4.241 5 O -0.281 6.281 6 C 0.404 3.596 7 O -0.456 6.456 8 N -0.368 5.368 9 C -0.011 4.011 10 C 0.088 3.912 11 O -0.349 6.349 12 C -0.154 4.154 13 C 0.003 3.997 14 N -0.379 5.379 15 C 0.366 3.634 16 O -0.461 6.461 17 C -0.582 4.582 18 H 0.090 0.910 19 C -0.132 4.132 20 N -0.397 5.397 21 Si 0.730 3.270 22 H -0.206 1.206 23 H -0.192 1.192 24 H -0.193 1.193 25 C 0.004 3.996 26 C -0.200 4.200 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.107 0.893 30 H 0.085 0.915 31 H 0.099 0.901 32 H 0.086 0.914 33 H 0.107 0.893 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.238 0.762 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.213 0.787 40 H 0.091 0.909 41 H 0.098 0.902 42 H 0.069 0.931 43 H 0.102 0.898 44 H 0.080 0.920 45 H 0.111 0.889 46 H 0.064 0.936 47 H 0.081 0.919 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.254 14.652 -18.344 23.702 hybrid contribution -0.109 1.603 0.702 1.754 sum 3.145 16.255 -17.642 24.195 Atomic orbital electron populations 1.22523 0.93949 1.05165 1.02517 1.22064 0.94413 0.91484 0.82052 1.21864 1.02255 0.92534 1.03161 1.22519 1.01545 1.03556 0.96456 1.86297 1.71602 1.23656 1.46530 1.18048 0.78887 0.80462 0.82224 1.90908 1.40977 1.70465 1.43271 1.44718 1.55730 1.12862 1.23535 1.22220 1.01114 0.78562 0.99212 1.21478 0.80820 0.97407 0.91466 1.86668 1.20000 1.32258 1.96017 1.21886 1.01491 0.92047 0.99982 1.21007 0.97965 0.95900 0.84813 1.48149 1.66458 1.05516 1.17786 1.18234 0.76528 0.88270 0.80406 1.90594 1.60221 1.15926 1.79323 1.20932 1.37454 0.94330 1.05506 0.91024 1.25725 0.94367 0.94944 0.98164 1.70000 1.29362 1.12332 1.27991 0.86467 0.79349 0.80599 0.80550 1.20552 1.19248 1.19299 1.21207 0.98357 0.83783 0.96295 1.22585 1.02627 0.98174 0.96621 0.92087 0.91161 0.89329 0.91454 0.90148 0.91406 0.89349 0.91166 0.92170 0.76172 0.90314 0.90154 0.78729 0.90911 0.90190 0.93096 0.89798 0.92020 0.88859 0.93559 0.91866 0.90272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.66 8.37 37.16 0.31 -1.35 16 2 C 0.14 1.22 1.13 -90.63 -0.10 1.12 16 3 C -0.14 -0.89 8.85 37.15 0.33 -0.56 16 4 C -0.18 -1.60 8.37 37.16 0.31 -1.29 16 5 O -0.37 -3.95 9.94 -40.29 -0.40 -4.35 16 6 C 0.65 7.84 8.06 54.05 0.44 8.28 16 7 O -0.57 -8.10 11.88 -19.28 -0.23 -8.33 16 8 N -0.71 -7.24 5.02 -65.28 -0.33 -7.57 16 9 C 0.11 1.27 4.81 -4.04 -0.02 1.25 16 10 C 0.13 1.63 0.71 -90.58 -0.06 1.57 16 11 O -0.54 -6.69 11.70 -35.23 -0.41 -7.10 16 12 C -0.12 -1.74 5.11 -26.61 -0.14 -1.87 16 13 C 0.13 2.48 6.18 -3.71 -0.02 2.45 16 14 N -0.64 -14.18 2.98 -174.69 -0.52 -14.70 16 15 C 0.56 15.69 7.61 -12.99 -0.10 15.59 16 16 O -0.58 -18.57 14.48 5.19 0.08 -18.49 16 17 C -0.55 -14.97 8.87 -35.63 -0.32 -15.29 16 18 H 0.07 1.77 5.65 -52.48 -0.30 1.48 16 19 C 0.09 2.41 5.50 -17.36 -0.10 2.31 16 20 N -0.77 -22.79 11.85 55.55 0.66 -22.13 16 21 Si 0.91 19.75 29.56 -169.99 -5.02 14.73 16 22 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 23 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 24 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 25 C 0.13 2.25 6.08 -3.93 -0.02 2.23 16 26 C -0.16 -2.18 4.91 -26.83 -0.13 -2.31 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.09 1.02 5.88 -51.93 -0.31 0.71 16 30 H 0.07 0.40 8.14 -51.92 -0.42 -0.02 16 31 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.09 0.99 5.88 -51.93 -0.31 0.68 16 34 H 0.07 0.48 8.14 -51.92 -0.42 0.05 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.40 3.28 6.50 -40.82 -0.27 3.01 16 37 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.37 3.15 7.85 45.56 0.36 3.50 16 40 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 42 H 0.05 0.97 7.81 -51.93 -0.41 0.56 16 43 H 0.08 1.83 7.04 -51.93 -0.37 1.47 16 44 H 0.27 7.27 8.29 -40.82 -0.34 6.93 16 45 H 0.09 1.74 5.30 -51.93 -0.28 1.46 16 46 H 0.05 0.76 7.81 -51.93 -0.41 0.36 16 47 H 0.06 0.66 6.82 -51.93 -0.35 0.31 16 48 H 0.08 1.18 8.14 -51.92 -0.42 0.76 16 LS Contribution 375.84 15.07 5.66 5.66 Total: -1.00 -35.43 375.84 -6.97 -42.40 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -6.83 Total: 7.75 kcal Atomic # 6 Polarization: 11.76 SS G_CDS: 0.38 Total: 12.13 kcal Atomic # 7 Polarization: -44.21 SS G_CDS: -0.19 Total: -44.40 kcal Atomic # 8 Polarization: -37.30 SS G_CDS: -0.97 Total: -38.27 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.73 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.43 -6.97 -42.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362903792.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.319 kcal (2) G-P(sol) polarization free energy of solvation -35.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds