Wall clock time and date at job start Tue Mar 31 2020 15:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47503 * 2 1 4 4 C 1.50703 * 109.47505 * 239.99865 * 2 1 3 5 5 H 1.08003 * 119.99481 * 245.99388 * 4 2 1 6 6 C 1.37869 * 120.00032 * 65.98454 * 4 2 1 7 7 N 1.31512 * 119.99980 * 194.34665 * 6 4 2 8 8 Si 1.86800 * 120.00000 * 14.34652 * 6 4 2 9 9 H 1.48507 * 109.47207 * 180.02562 * 8 6 4 10 10 H 1.48503 * 109.47075 * 299.99670 * 8 6 4 11 11 H 1.48495 * 109.47097 * 60.00252 * 8 6 4 12 12 N 1.46908 * 109.47119 * 119.99432 * 2 1 3 13 13 C 1.46896 * 110.99793 * 275.00407 * 12 2 1 14 14 H 1.08996 * 109.47857 * 35.00108 * 13 12 2 15 15 C 1.53004 * 109.46837 * 274.99278 * 13 12 2 16 16 C 1.50709 * 109.46901 * 154.99805 * 13 12 2 17 17 N 1.32168 * 119.91104 * 44.99567 * 16 13 12 18 18 C 1.33091 * 120.08933 * 179.97438 * 17 16 13 19 19 N 1.37998 * 120.04718 * 179.97438 * 18 17 16 20 20 N 1.32871 * 119.91073 * 0.02562 * 18 17 16 21 21 C 1.32849 * 119.82233 * 359.97438 * 20 18 17 22 22 N 1.38129 * 120.04413 * 180.02562 * 21 20 18 23 23 C 1.39846 * 119.99982 * 355.03235 * 22 21 20 24 24 C 1.38894 * 120.06897 * 325.43665 * 23 22 21 25 25 C 1.38100 * 119.92641 * 179.70428 * 24 23 22 26 26 C 1.38294 * 120.07270 * 0.57037 * 25 24 23 27 27 C 1.38286 * 120.14343 * 359.72864 * 26 25 24 28 28 C 1.38111 * 120.07064 * 359.97365 * 27 26 25 29 29 N 1.32124 * 119.91021 * 224.72167 * 16 13 12 30 30 H 1.09002 * 109.46650 * 65.05438 * 1 2 3 31 31 H 1.08999 * 109.47331 * 185.05752 * 1 2 3 32 32 H 1.09001 * 109.46894 * 305.05734 * 1 2 3 33 33 H 0.97002 * 120.00077 * 354.82676 * 7 6 4 34 34 H 1.00899 * 110.99504 * 151.04426 * 12 2 1 35 35 H 1.09000 * 109.46936 * 180.02562 * 15 13 12 36 36 H 1.08999 * 109.47489 * 300.00230 * 15 13 12 37 37 H 1.08999 * 109.46975 * 60.01168 * 15 13 12 38 38 H 0.96996 * 120.00200 * 359.97438 * 19 18 17 39 39 H 0.97008 * 119.99597 * 180.02562 * 19 18 17 40 40 H 0.96998 * 120.00819 * 175.02750 * 22 21 20 41 41 H 1.08006 * 120.03836 * 0.02562 * 24 23 22 42 42 H 1.07999 * 119.96775 * 180.32295 * 25 24 23 43 43 H 1.07996 * 119.92686 * 179.70051 * 26 25 24 44 44 H 1.08001 * 119.96444 * 180.02562 * 27 26 25 45 45 H 1.08003 * 120.03327 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5712 -1.6415 -1.1341 6 6 1.8041 -0.1719 -2.4789 7 7 1.9825 -0.9070 -3.5547 8 14 1.2415 1.6018 -2.6424 9 1 1.0675 1.9356 -4.0789 10 1 -0.0516 1.7782 -1.9337 11 1 2.2605 2.5014 -2.0445 12 7 2.0197 -0.6924 1.1996 13 6 2.0824 0.2228 2.3469 14 1 1.2575 0.9331 2.2907 15 6 3.4111 0.9810 2.3224 16 6 1.9784 -0.5674 3.6260 17 7 2.6827 -1.6759 3.7750 18 6 2.5941 -2.3761 4.9033 19 7 3.3294 -3.5336 5.0577 20 7 1.7958 -1.9598 5.8805 21 6 1.0895 -0.8452 5.7270 22 7 0.2586 -0.4079 6.7401 23 6 0.0802 -1.1908 7.8850 24 6 0.0788 -2.5763 7.7875 25 6 -0.0915 -3.3466 8.9210 26 6 -0.2722 -2.7399 10.1505 27 6 -0.2774 -1.3606 10.2501 28 6 -0.1015 -0.5845 9.1213 29 7 1.1877 -0.1473 4.5975 30 1 -0.3633 0.4334 -0.9318 31 1 -0.3634 -1.0236 0.0906 32 1 -0.3633 0.5903 0.8412 33 1 2.3460 -1.8028 -3.4753 34 1 2.9173 -1.1204 1.0288 35 1 3.4578 1.6598 3.1740 36 1 4.2359 0.2707 2.3787 37 1 3.4862 1.5526 1.3973 38 1 3.9111 -3.8376 4.3436 39 1 3.2639 -4.0437 5.8803 40 1 -0.2012 0.4422 6.6575 41 1 0.2158 -3.0508 6.8269 42 1 -0.0875 -4.4240 8.8466 43 1 -0.4099 -3.3445 11.0346 44 1 -0.4183 -0.8898 11.2119 45 1 -0.1053 0.4926 9.1999 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364746477.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:37 Heat of formation + Delta-G solvation = 111.569977 kcal Electronic energy + Delta-G solvation = -27246.144253 eV Core-core repulsion = 23492.307500 eV Total energy + Delta-G solvation = -3753.836754 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.171 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.54982 -39.61883 -37.18353 -36.56462 -35.16938 -33.35209 -32.28899 -31.64815 -31.09983 -30.57786 -29.33580 -27.37668 -25.27074 -24.50583 -24.10820 -22.67258 -22.30109 -21.00365 -19.77818 -19.00774 -18.30475 -17.52365 -17.28917 -16.49074 -16.15576 -15.80665 -15.58934 -14.87705 -14.75760 -14.63366 -14.19305 -14.02102 -13.76120 -13.56325 -13.41983 -13.27936 -12.71767 -12.44398 -12.38189 -12.22896 -11.80854 -11.72666 -11.37709 -11.21025 -11.19445 -10.94613 -10.72615 -10.37472 -9.97974 -9.88274 -9.60108 -9.47239 -9.35169 -9.08417 -8.92965 -8.81615 -8.28093 -8.08814 -7.52848 -6.44216 -4.06610 0.91086 1.20253 1.31141 1.61613 2.42543 3.08712 3.39537 3.41864 3.60212 3.60594 3.88486 4.10498 4.37216 4.49049 4.68053 4.73854 4.88148 4.94760 5.18350 5.22209 5.29860 5.32556 5.45629 5.48468 5.59062 5.76278 5.89995 6.05720 6.11797 6.13844 6.19126 6.32683 6.35202 6.44248 6.51278 6.54934 6.65820 6.72915 6.81127 6.90186 6.94984 7.15155 7.39391 7.48861 7.60202 7.72623 8.12698 8.41039 8.48915 8.66068 8.96583 9.62795 10.96068 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.022850 B = 0.002578 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.095386 B =10858.099023 C =11287.581867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.190 3.810 3 H -0.002 1.002 4 C -0.598 4.598 5 H 0.061 0.939 6 C 0.030 3.970 7 N -0.908 5.908 8 Si 1.046 2.954 9 H -0.286 1.286 10 H -0.271 1.271 11 H -0.284 1.284 12 N -0.664 5.664 13 C 0.146 3.854 14 H 0.102 0.898 15 C -0.170 4.170 16 C 0.459 3.541 17 N -0.606 5.606 18 C 0.622 3.378 19 N -0.808 5.808 20 N -0.647 5.647 21 C 0.621 3.379 22 N -0.632 5.632 23 C 0.168 3.832 24 C -0.112 4.112 25 C -0.102 4.102 26 C -0.141 4.141 27 C -0.101 4.101 28 C -0.150 4.150 29 N -0.628 5.628 30 H 0.055 0.945 31 H 0.048 0.952 32 H 0.019 0.981 33 H 0.267 0.733 34 H 0.348 0.652 35 H 0.053 0.947 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.419 0.581 39 H 0.413 0.587 40 H 0.425 0.575 41 H 0.134 0.866 42 H 0.123 0.877 43 H 0.120 0.880 44 H 0.124 0.876 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.344 -1.255 27.029 27.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.081 3.919 3 H 0.015 0.985 4 C -0.637 4.637 5 H 0.079 0.921 6 C -0.175 4.175 7 N -0.542 5.542 8 Si 0.875 3.125 9 H -0.212 1.212 10 H -0.197 1.197 11 H -0.211 1.211 12 N -0.296 5.296 13 C 0.033 3.967 14 H 0.120 0.880 15 C -0.230 4.230 16 C 0.182 3.818 17 N -0.338 5.338 18 C 0.255 3.745 19 N -0.357 5.357 20 N -0.387 5.387 21 C 0.256 3.744 22 N -0.263 5.263 23 C 0.073 3.927 24 C -0.133 4.133 25 C -0.120 4.120 26 C -0.161 4.161 27 C -0.120 4.120 28 C -0.171 4.171 29 N -0.361 5.361 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.038 0.962 33 H 0.078 0.922 34 H 0.168 0.832 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.251 0.749 39 H 0.244 0.756 40 H 0.265 0.735 41 H 0.152 0.848 42 H 0.141 0.859 43 H 0.138 0.862 44 H 0.142 0.858 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.410 -0.460 26.089 26.204 hybrid contribution 1.285 -0.764 1.036 1.819 sum -1.125 -1.224 27.125 27.176 Atomic orbital electron populations 1.22215 0.98385 1.00483 0.98960 1.19466 0.92027 0.92601 0.87815 0.98458 1.22078 1.40661 1.09855 0.91085 0.92100 1.25717 0.95053 1.04730 0.91990 1.70846 1.41070 1.11344 1.30949 0.84053 0.77194 0.75298 0.75981 1.21229 1.19745 1.21080 1.60430 1.33911 1.31140 1.04120 1.20294 0.98523 0.91884 0.86048 0.87988 1.22421 0.97320 1.00747 1.02553 1.23230 0.80784 0.85624 0.92170 1.68442 1.31122 1.11030 1.23247 1.19173 0.84419 0.86652 0.84251 1.41651 1.47998 1.23369 1.22700 1.68048 1.17371 1.19488 1.33776 1.18860 0.84979 0.84900 0.85686 1.41403 1.46470 1.23564 1.14821 1.17625 0.99253 0.90720 0.85140 1.21176 1.00136 0.92061 0.99887 1.21019 0.99077 0.99771 0.92167 1.21104 1.02448 0.94792 0.97714 1.20886 0.99605 0.93788 0.97720 1.20857 1.05344 1.00059 0.90832 1.68357 1.28423 1.37139 1.02212 0.92652 0.93255 0.96205 0.92247 0.83178 0.92833 0.91807 0.90769 0.74909 0.75606 0.73544 0.84807 0.85934 0.86197 0.85849 0.85820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 9.04 37.16 0.34 -2.92 16 2 C 0.19 4.46 1.99 -68.86 -0.14 4.33 16 3 H 0.00 -0.05 5.81 -51.93 -0.30 -0.35 16 4 C -0.60 -16.55 8.84 -34.44 -0.30 -16.85 16 5 H 0.06 1.82 7.92 -52.48 -0.42 1.40 16 6 C 0.03 0.86 5.35 -17.82 -0.10 0.77 16 7 N -0.91 -27.70 13.70 55.43 0.76 -26.94 16 8 Si 1.05 24.88 26.24 -169.99 -4.46 20.42 16 9 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 10 H -0.27 -5.98 5.57 56.52 0.31 -5.66 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 N -0.66 -13.96 5.87 -102.16 -0.60 -14.56 16 13 C 0.15 2.62 2.83 -68.86 -0.19 2.43 16 14 H 0.10 1.86 7.15 -51.93 -0.37 1.49 16 15 C -0.17 -2.69 9.13 37.16 0.34 -2.36 16 16 C 0.46 8.09 6.63 -156.58 -1.04 7.05 16 17 N -0.61 -10.25 10.26 -11.52 -0.12 -10.37 16 18 C 0.62 9.16 8.76 -322.14 -2.82 6.34 16 19 N -0.81 -8.23 9.05 29.85 0.27 -7.96 16 20 N -0.65 -9.43 7.35 -14.72 -0.11 -9.53 16 21 C 0.62 9.34 8.21 -321.93 -2.64 6.69 16 22 N -0.63 -7.50 5.47 -11.51 -0.06 -7.57 16 23 C 0.17 1.86 6.27 -83.72 -0.52 1.33 16 24 C -0.11 -1.25 8.57 -39.39 -0.34 -1.59 16 25 C -0.10 -0.92 10.04 -39.61 -0.40 -1.31 16 26 C -0.14 -1.12 10.04 -39.54 -0.40 -1.52 16 27 C -0.10 -0.80 10.04 -39.61 -0.40 -1.20 16 28 C -0.15 -1.34 9.97 -39.39 -0.39 -1.73 16 29 N -0.63 -10.44 10.45 -11.48 -0.12 -10.56 16 30 H 0.05 1.29 4.59 -51.93 -0.24 1.05 16 31 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.02 0.39 7.50 -51.93 -0.39 0.00 16 33 H 0.27 8.16 8.73 -40.82 -0.36 7.80 16 34 H 0.35 7.49 8.00 -39.29 -0.31 7.17 16 35 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 1.00 8.13 -51.93 -0.42 0.58 16 37 H 0.07 1.21 7.43 -51.93 -0.39 0.82 16 38 H 0.42 3.73 8.95 -40.82 -0.37 3.37 16 39 H 0.41 3.21 8.95 -40.82 -0.37 2.84 16 40 H 0.43 4.19 8.94 -40.82 -0.36 3.82 16 41 H 0.13 1.70 6.35 -52.48 -0.33 1.37 16 42 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 43 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 44 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 45 H 0.12 0.88 8.06 -52.48 -0.42 0.45 16 LS Contribution 370.83 15.07 5.59 5.59 Total: -1.00 -32.40 370.83 -13.90 -46.30 By element: Atomic # 1 Polarization: 21.76 SS G_CDS: -6.04 Total: 15.71 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: -9.01 Total: -0.54 kcal Atomic # 7 Polarization: -87.51 SS G_CDS: 0.02 Total: -87.49 kcal Atomic # 14 Polarization: 24.88 SS G_CDS: -4.46 Total: 20.42 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.40 -13.90 -46.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364746477.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.873 kcal (2) G-P(sol) polarization free energy of solvation -32.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds