Wall clock time and date at job start Tue Mar 31 2020 15:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46883 * 2 1 4 4 C 1.50703 * 109.46800 * 240.00388 * 2 1 3 5 5 H 1.08004 * 119.99537 * 240.00365 * 4 2 1 6 6 C 1.37875 * 120.00220 * 59.99926 * 4 2 1 7 7 N 1.31516 * 119.99862 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99982 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47267 * 90.00336 * 8 6 4 10 10 H 1.48507 * 109.46572 * 210.00284 * 8 6 4 11 11 H 1.48499 * 109.46950 * 329.99713 * 8 6 4 12 12 N 1.46898 * 109.47031 * 120.00654 * 2 1 3 13 13 C 1.46897 * 110.99685 * 204.01461 * 12 2 1 14 14 H 1.08996 * 109.47581 * 323.87478 * 13 12 2 15 15 C 1.53005 * 109.47390 * 83.87647 * 13 12 2 16 16 C 1.50703 * 109.46994 * 203.87865 * 13 12 2 17 17 N 1.32168 * 119.90830 * 314.99654 * 16 13 12 18 18 C 1.33108 * 120.08441 * 180.02562 * 17 16 13 19 19 N 1.37993 * 120.04357 * 179.97438 * 18 17 16 20 20 N 1.32862 * 119.90875 * 0.02562 * 18 17 16 21 21 C 1.32846 * 119.82859 * 0.02562 * 20 18 17 22 22 N 1.38134 * 120.04201 * 180.02562 * 21 20 18 23 23 C 1.39832 * 120.00376 * 354.32410 * 22 21 20 24 24 C 1.38889 * 120.07399 * 142.54000 * 23 22 21 25 25 C 1.38103 * 119.93010 * 179.97438 * 24 23 22 26 26 C 1.38286 * 120.07157 * 359.97438 * 25 24 23 27 27 C 1.38286 * 120.14654 * 0.26394 * 26 25 24 28 28 C 1.38112 * 120.06665 * 359.48212 * 27 26 25 29 29 N 1.32135 * 119.91297 * 135.27719 * 16 13 12 30 30 H 1.09005 * 109.46593 * 303.36241 * 1 2 3 31 31 H 1.09004 * 109.47234 * 63.35679 * 1 2 3 32 32 H 1.09002 * 109.47349 * 183.36304 * 1 2 3 33 33 H 0.96997 * 119.99920 * 179.97438 * 7 6 4 34 34 H 1.00899 * 111.00201 * 80.05724 * 12 2 1 35 35 H 1.08997 * 109.47097 * 175.00772 * 15 13 12 36 36 H 1.08998 * 109.46924 * 295.01006 * 15 13 12 37 37 H 1.09006 * 109.46767 * 55.01092 * 15 13 12 38 38 H 0.96996 * 120.00069 * 180.02562 * 19 18 17 39 39 H 0.97006 * 120.00054 * 0.02562 * 19 18 17 40 40 H 0.97001 * 119.99771 * 174.32806 * 22 21 20 41 41 H 1.08002 * 120.03809 * 359.95868 * 24 23 22 42 42 H 1.08004 * 119.96759 * 180.02562 * 25 24 23 43 43 H 1.08004 * 119.92755 * 179.97438 * 26 25 24 44 44 H 1.07995 * 119.96339 * 179.73885 * 27 26 25 45 45 H 1.07999 * 120.03004 * 180.23385 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8298 -2.6034 8 14 2.3212 -1.1202 -4.0080 9 1 1.3425 -2.1615 -4.4120 10 1 2.4865 -0.1411 -5.1123 11 1 3.6292 -1.7582 -3.7123 12 7 2.0197 -0.6926 1.1993 13 6 3.3762 -0.2487 1.5466 14 1 3.9421 -0.0615 0.6341 15 6 3.2965 1.0383 2.3703 16 6 4.0641 -1.3197 2.3534 17 7 3.4189 -1.9191 3.3388 18 6 4.0233 -2.8652 4.0540 19 7 3.3490 -3.4901 5.0830 20 7 5.2770 -3.2062 3.7763 21 6 5.9226 -2.6006 2.7857 22 7 7.2260 -2.9521 2.4929 23 6 7.9065 -3.8587 3.3115 24 6 8.7749 -4.7865 2.7510 25 6 9.4458 -5.6802 3.5624 26 6 9.2543 -5.6517 4.9316 27 6 8.3866 -4.7325 5.4925 28 6 7.7166 -3.8326 4.6871 29 7 5.3126 -1.6530 2.0772 30 1 -0.3633 0.5652 0.8584 31 1 -0.3634 0.4609 -0.9186 32 1 -0.3634 -1.0259 0.0603 33 1 0.7086 1.1614 -3.4843 34 1 1.9869 -1.6937 1.0775 35 1 4.2958 1.3193 2.7029 36 1 2.8798 1.8370 1.7568 37 1 2.6572 0.8753 3.2380 38 1 3.7901 -4.1792 5.6040 39 1 2.4337 -3.2403 5.2854 40 1 7.6692 -2.5699 1.7193 41 1 8.9251 -4.8093 1.6818 42 1 10.1215 -6.4017 3.1272 43 1 9.7799 -6.3520 5.5640 44 1 8.2360 -4.7156 6.5618 45 1 7.0420 -3.1125 5.1262 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364746479.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:40 Heat of formation + Delta-G solvation = 110.377134 kcal Electronic energy + Delta-G solvation = -27333.017360 eV Core-core repulsion = 23579.128881 eV Total energy + Delta-G solvation = -3753.888479 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.171 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.49290 -39.57720 -36.91737 -36.48769 -35.03944 -33.29262 -32.13838 -31.58755 -31.05933 -30.20310 -29.27109 -27.12285 -25.02742 -24.84999 -24.03576 -22.64178 -22.20237 -20.75241 -19.92212 -19.03569 -18.12664 -17.31947 -16.65407 -16.35348 -16.09396 -15.76753 -15.50333 -14.86015 -14.78347 -14.58577 -14.12420 -13.94369 -13.74606 -13.52552 -13.26138 -13.15789 -12.48019 -12.34165 -12.01537 -11.78001 -11.69878 -11.32725 -11.24425 -11.05441 -10.93631 -10.84541 -10.67730 -10.19338 -10.07354 -9.95406 -9.74468 -9.37835 -9.27512 -9.07654 -9.04499 -8.87980 -8.38072 -8.06478 -7.29085 -5.98473 -4.11060 0.95302 1.23223 1.35536 1.64869 2.49592 3.13821 3.28574 3.35505 3.39215 3.63393 3.97180 4.15737 4.41026 4.46529 4.72609 4.77175 4.94187 4.97345 5.22641 5.26255 5.34545 5.39577 5.50304 5.78388 5.87524 5.97014 6.10879 6.16500 6.22793 6.31337 6.35997 6.50009 6.52009 6.58760 6.70561 6.79526 6.91743 6.94662 7.19860 7.20559 7.30615 7.43066 7.54240 7.66003 7.76169 8.08697 8.16479 8.30752 8.60986 8.73979 9.00345 9.56865 11.02169 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.014785 B = 0.003023 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.388520 B = 9260.994440 C =10497.638064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.207 3.793 3 H 0.037 0.963 4 C -0.545 4.545 5 H 0.051 0.949 6 C 0.069 3.931 7 N -0.885 5.885 8 Si 0.888 3.112 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.667 5.667 13 C 0.155 3.845 14 H 0.079 0.921 15 C -0.127 4.127 16 C 0.442 3.558 17 N -0.600 5.600 18 C 0.619 3.381 19 N -0.808 5.808 20 N -0.647 5.647 21 C 0.620 3.380 22 N -0.634 5.634 23 C 0.169 3.831 24 C -0.147 4.147 25 C -0.101 4.101 26 C -0.141 4.141 27 C -0.103 4.103 28 C -0.110 4.110 29 N -0.623 5.623 30 H 0.015 0.985 31 H 0.083 0.917 32 H 0.023 0.977 33 H 0.261 0.739 34 H 0.330 0.670 35 H 0.044 0.956 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.413 0.587 39 H 0.419 0.581 40 H 0.426 0.574 41 H 0.125 0.875 42 H 0.124 0.876 43 H 0.120 0.880 44 H 0.122 0.878 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.720 -9.832 16.498 23.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.099 3.901 3 H 0.055 0.945 4 C -0.584 4.584 5 H 0.070 0.930 6 C -0.134 4.134 7 N -0.524 5.524 8 Si 0.716 3.284 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.299 5.299 13 C 0.043 3.957 14 H 0.097 0.903 15 C -0.186 4.186 16 C 0.165 3.835 17 N -0.333 5.333 18 C 0.252 3.748 19 N -0.358 5.358 20 N -0.386 5.386 21 C 0.255 3.745 22 N -0.265 5.265 23 C 0.074 3.926 24 C -0.168 4.168 25 C -0.120 4.120 26 C -0.160 4.160 27 C -0.121 4.121 28 C -0.131 4.131 29 N -0.356 5.356 30 H 0.034 0.966 31 H 0.102 0.898 32 H 0.042 0.958 33 H 0.071 0.929 34 H 0.147 0.853 35 H 0.063 0.937 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.243 0.757 39 H 0.251 0.749 40 H 0.266 0.734 41 H 0.143 0.857 42 H 0.142 0.858 43 H 0.138 0.862 44 H 0.140 0.860 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 13.313 -9.308 16.866 23.417 hybrid contribution 0.865 -1.162 -1.731 2.257 sum 14.178 -10.469 15.135 23.231 Atomic orbital electron populations 1.21665 0.97480 0.98627 1.00444 1.19243 0.92563 0.94240 0.84014 0.94474 1.21852 1.31804 1.12772 0.92004 0.93049 1.24899 0.94797 0.94814 0.98851 1.69876 1.36338 1.22686 1.23460 0.86667 0.79271 0.79536 0.82967 1.20706 1.21130 1.20057 1.61069 1.17759 1.10484 1.40551 1.20265 0.90865 0.89415 0.95159 0.90280 1.21719 1.00436 0.96023 1.00414 1.23516 0.84306 0.89546 0.86161 1.68571 1.38857 1.13928 1.11915 1.19215 0.84295 0.85205 0.86107 1.41633 1.17390 1.42921 1.33807 1.68005 1.10317 1.35731 1.24591 1.18890 0.85952 0.84780 0.84882 1.41411 1.08705 1.45668 1.30677 1.17599 0.94254 0.90769 0.89991 1.20923 1.00313 0.95447 1.00122 1.20902 0.99225 0.98265 0.93604 1.21099 0.99835 0.99914 0.95110 1.20993 0.96275 0.95233 0.99635 1.21073 0.99986 1.00330 0.91676 1.68455 1.13351 1.19826 1.33971 0.96632 0.89841 0.95813 0.92878 0.85283 0.93698 0.91212 0.91728 0.75657 0.74916 0.73436 0.85734 0.85821 0.86189 0.85971 0.85306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.04 9.34 37.16 0.35 -2.69 16 2 C 0.21 5.16 2.41 -68.86 -0.17 4.99 16 3 H 0.04 0.99 7.08 -51.93 -0.37 0.63 16 4 C -0.55 -14.83 8.21 -34.44 -0.28 -15.11 16 5 H 0.05 1.42 7.76 -52.48 -0.41 1.01 16 6 C 0.07 1.89 5.30 -17.82 -0.09 1.80 16 7 N -0.89 -24.98 11.30 55.43 0.63 -24.36 16 8 Si 0.89 21.38 29.54 -169.99 -5.02 16.35 16 9 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 N -0.67 -14.50 5.88 -102.17 -0.60 -15.10 16 13 C 0.16 3.08 2.86 -68.86 -0.20 2.88 16 14 H 0.08 1.74 7.60 -51.93 -0.39 1.35 16 15 C -0.13 -2.22 9.34 37.16 0.35 -1.87 16 16 C 0.44 8.25 6.30 -156.58 -0.99 7.26 16 17 N -0.60 -10.42 10.23 -11.52 -0.12 -10.53 16 18 C 0.62 9.31 8.76 -322.13 -2.82 6.49 16 19 N -0.81 -8.29 9.05 29.85 0.27 -8.02 16 20 N -0.65 -9.79 7.60 -14.72 -0.11 -9.91 16 21 C 0.62 9.91 8.18 -321.93 -2.63 7.28 16 22 N -0.63 -8.18 5.46 -11.51 -0.06 -8.24 16 23 C 0.17 1.98 6.20 -83.73 -0.52 1.46 16 24 C -0.15 -1.45 9.97 -39.39 -0.39 -1.85 16 25 C -0.10 -0.86 10.04 -39.61 -0.40 -1.26 16 26 C -0.14 -1.17 10.04 -39.55 -0.40 -1.56 16 27 C -0.10 -0.94 10.04 -39.61 -0.40 -1.34 16 28 C -0.11 -1.24 8.57 -39.39 -0.34 -1.58 16 29 N -0.62 -11.21 10.45 -11.48 -0.12 -11.33 16 30 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.08 2.22 5.99 -51.93 -0.31 1.91 16 32 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 34 H 0.33 7.46 8.05 -39.29 -0.32 7.15 16 35 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 1.24 7.41 -51.93 -0.38 0.86 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.41 3.26 8.95 -40.82 -0.37 2.89 16 39 H 0.42 3.69 8.95 -40.82 -0.37 3.33 16 40 H 0.43 4.79 8.95 -40.82 -0.37 4.42 16 41 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 42 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 43 H 0.12 0.72 8.06 -52.48 -0.42 0.30 16 44 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 45 H 0.13 1.60 6.62 -52.49 -0.35 1.25 16 LS Contribution 376.85 15.07 5.68 5.68 Total: -1.00 -30.76 376.85 -14.53 -45.29 By element: Atomic # 1 Polarization: 21.40 SS G_CDS: -6.14 Total: 15.26 kcal Atomic # 6 Polarization: 13.83 SS G_CDS: -8.93 Total: 4.90 kcal Atomic # 7 Polarization: -87.36 SS G_CDS: -0.12 Total: -87.48 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.76 -14.53 -45.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364746479.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.665 kcal (2) G-P(sol) polarization free energy of solvation -30.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds