Wall clock time and date at job start Tue Mar 31 2020 15:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09008 * 109.47090 * 2 1 4 4 C 1.50692 * 109.47324 * 120.00287 * 2 1 3 5 5 H 1.08005 * 120.00278 * 120.00250 * 4 2 1 6 6 C 1.37876 * 119.99983 * 300.00035 * 4 2 1 7 7 N 1.31519 * 120.00212 * 179.97438 * 6 4 2 8 8 Si 1.86799 * 120.00189 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.47091 * 89.99891 * 8 6 4 10 10 H 1.48501 * 109.47187 * 210.00077 * 8 6 4 11 11 H 1.48504 * 109.46764 * 330.00034 * 8 6 4 12 12 N 1.46901 * 109.46985 * 240.00524 * 2 1 3 13 13 C 1.46900 * 111.00147 * 84.99924 * 12 2 1 14 14 H 1.09003 * 109.47313 * 325.00017 * 13 12 2 15 15 C 1.52998 * 109.47236 * 85.00066 * 13 12 2 16 16 C 1.50702 * 109.47167 * 204.99780 * 13 12 2 17 17 N 1.32167 * 119.91011 * 315.00119 * 16 13 12 18 18 C 1.33105 * 120.08568 * 179.97438 * 17 16 13 19 19 N 1.37996 * 120.04534 * 179.97438 * 18 17 16 20 20 N 1.32871 * 119.90979 * 0.02562 * 18 17 16 21 21 C 1.32841 * 119.82403 * 359.97438 * 20 18 17 22 22 N 1.38133 * 120.04331 * 180.02562 * 21 20 18 23 23 C 1.39836 * 120.00055 * 354.39032 * 22 21 20 24 24 C 1.38895 * 120.07666 * 142.38471 * 23 22 21 25 25 C 1.38103 * 119.92990 * 179.97438 * 24 23 22 26 26 C 1.38284 * 120.07195 * 0.02562 * 25 24 23 27 27 C 1.38283 * 120.14734 * 0.24445 * 26 25 24 28 28 C 1.38113 * 120.07238 * 359.49645 * 27 26 25 29 29 N 1.32136 * 119.91052 * 135.27328 * 16 13 12 30 30 H 1.09000 * 109.46628 * 299.99404 * 1 2 3 31 31 H 1.09000 * 109.46793 * 59.99813 * 1 2 3 32 32 H 1.09001 * 109.46822 * 179.97438 * 1 2 3 33 33 H 0.96990 * 120.00491 * 179.97438 * 7 6 4 34 34 H 1.00896 * 111.00253 * 321.04237 * 12 2 1 35 35 H 1.09009 * 109.47157 * 299.99849 * 15 13 12 36 36 H 1.08993 * 109.47750 * 59.99818 * 15 13 12 37 37 H 1.09003 * 109.47207 * 180.02562 * 15 13 12 38 38 H 0.97000 * 119.99672 * 180.02562 * 19 18 17 39 39 H 0.96992 * 119.99776 * 0.02732 * 19 18 17 40 40 H 0.96998 * 120.00325 * 174.39436 * 22 21 20 41 41 H 1.07999 * 120.03275 * 359.96002 * 24 23 22 42 42 H 1.07999 * 119.96655 * 180.02562 * 25 24 23 43 43 H 1.08005 * 119.92850 * 179.97438 * 26 25 24 44 44 H 1.08000 * 119.96885 * 179.74719 * 27 26 25 45 45 H 1.08003 * 120.03649 * 180.22834 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2303 5 1 2.6534 -1.5885 1.1312 6 6 1.6993 -0.2394 2.4826 7 7 2.1373 -0.8597 3.5565 8 14 0.6260 1.2797 2.6542 9 1 -0.8019 0.8744 2.6993 10 1 0.9773 1.9952 3.9071 11 1 0.8493 2.1773 1.4923 12 7 2.0197 -0.6924 -1.1995 13 6 2.0825 0.2228 -2.3469 14 1 1.2576 0.9331 -2.2907 15 6 3.4111 0.9810 -2.3224 16 6 1.9786 -0.5674 -3.6260 17 7 2.6829 -1.6758 -3.7749 18 6 2.5935 -2.3767 -4.9029 19 7 3.3297 -3.5336 -5.0578 20 7 1.7952 -1.9603 -5.8801 21 6 1.0889 -0.8458 -5.7266 22 7 0.2572 -0.4090 -6.7393 23 6 0.2459 -1.0729 -7.9700 24 6 -0.9478 -1.2387 -8.6605 25 6 -0.9554 -1.8944 -9.8759 26 6 0.2237 -2.3861 -10.4054 27 6 1.4130 -2.2277 -9.7179 28 6 1.4284 -1.5683 -8.5044 29 7 1.1878 -0.1473 -4.5976 30 1 -0.3632 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.9034 -0.5282 4.4374 34 1 1.4496 -1.4978 -1.4102 35 1 3.4862 1.5526 -1.3972 36 1 4.2359 0.2708 -2.3786 37 1 3.4575 1.6604 -3.1735 38 1 3.2642 -4.0436 -5.8803 39 1 3.9124 -3.8367 -4.3442 40 1 -0.3189 0.3582 -6.5969 41 1 -1.8690 -0.8554 -8.2472 42 1 -1.8831 -2.0233 -10.4136 43 1 0.2150 -2.8989 -11.3559 44 1 2.3315 -2.6165 -10.1321 45 1 2.3582 -1.4417 -7.9697 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364746481.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:43 Heat of formation + Delta-G solvation = 122.395023 kcal Electronic energy + Delta-G solvation = -27239.836150 eV Core-core repulsion = 23486.468806 eV Total energy + Delta-G solvation = -3753.367344 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.171 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.63179 -39.67130 -37.23679 -36.61372 -35.22742 -33.35009 -32.22362 -31.70557 -31.16084 -30.70390 -29.38185 -27.58706 -25.27754 -24.83218 -24.15081 -22.73384 -22.33549 -21.05889 -20.00322 -19.14552 -18.32443 -17.43741 -16.80261 -16.41929 -16.18827 -15.88532 -15.60057 -15.11571 -14.88544 -14.76691 -14.22661 -14.06976 -13.83268 -13.64515 -13.38922 -13.27335 -12.76801 -12.49229 -12.38010 -12.12422 -11.86427 -11.75694 -11.58332 -11.39644 -11.21366 -11.01070 -10.77899 -10.42163 -10.07110 -9.91982 -9.54465 -9.50577 -9.37099 -9.13484 -9.10508 -8.97126 -8.53383 -8.16999 -7.43685 -6.00433 -3.97475 0.85141 1.15074 1.21069 1.53682 2.37339 3.03737 3.28677 3.38437 3.41214 3.55186 3.80620 4.01662 4.30681 4.43811 4.64065 4.69666 4.80013 4.89860 5.06889 5.15178 5.26766 5.29657 5.39534 5.61592 5.72558 5.73669 5.93404 6.06642 6.08160 6.14648 6.23035 6.27942 6.30677 6.31559 6.38681 6.45835 6.53623 6.60135 6.69749 6.76984 6.85808 7.09710 7.11564 7.32731 7.55298 7.73465 7.90691 8.28160 8.59316 8.72609 9.12348 9.61960 11.13050 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.023163 B = 0.002582 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.535331 B =10841.710185 C =11418.063167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.182 3.818 3 H 0.038 0.962 4 C -0.493 4.493 5 H 0.083 0.917 6 C 0.067 3.933 7 N -0.901 5.901 8 Si 0.884 3.116 9 H -0.282 1.282 10 H -0.297 1.297 11 H -0.268 1.268 12 N -0.647 5.647 13 C 0.150 3.850 14 H 0.066 0.934 15 C -0.129 4.129 16 C 0.438 3.562 17 N -0.596 5.596 18 C 0.622 3.378 19 N -0.805 5.805 20 N -0.645 5.645 21 C 0.621 3.379 22 N -0.633 5.633 23 C 0.167 3.833 24 C -0.146 4.146 25 C -0.101 4.101 26 C -0.139 4.139 27 C -0.102 4.102 28 C -0.109 4.109 29 N -0.629 5.629 30 H 0.046 0.954 31 H 0.027 0.973 32 H 0.053 0.947 33 H 0.263 0.737 34 H 0.334 0.666 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.046 0.954 38 H 0.414 0.586 39 H 0.421 0.579 40 H 0.425 0.575 41 H 0.124 0.876 42 H 0.124 0.876 43 H 0.121 0.879 44 H 0.123 0.877 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.723 -1.687 -28.084 28.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.073 3.927 3 H 0.056 0.944 4 C -0.532 4.532 5 H 0.101 0.899 6 C -0.134 4.134 7 N -0.540 5.540 8 Si 0.715 3.285 9 H -0.209 1.209 10 H -0.225 1.225 11 H -0.193 1.193 12 N -0.279 5.279 13 C 0.038 3.962 14 H 0.084 0.916 15 C -0.188 4.188 16 C 0.160 3.840 17 N -0.328 5.328 18 C 0.255 3.745 19 N -0.355 5.355 20 N -0.385 5.385 21 C 0.256 3.744 22 N -0.264 5.264 23 C 0.072 3.928 24 C -0.167 4.167 25 C -0.120 4.120 26 C -0.158 4.158 27 C -0.121 4.121 28 C -0.130 4.130 29 N -0.362 5.362 30 H 0.065 0.935 31 H 0.046 0.954 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.152 0.848 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.065 0.935 38 H 0.245 0.755 39 H 0.253 0.747 40 H 0.265 0.735 41 H 0.142 0.858 42 H 0.142 0.858 43 H 0.139 0.861 44 H 0.141 0.859 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.996 -1.688 -27.768 27.891 hybrid contribution -1.801 0.766 0.016 1.957 sum -3.797 -0.922 -27.753 28.026 Atomic orbital electron populations 1.22895 1.01602 1.00904 0.98995 1.19760 0.88454 0.95344 0.89128 0.94385 1.20933 1.31034 1.13728 0.87485 0.89863 1.24931 0.96020 0.96597 0.95886 1.69880 1.45996 1.40336 0.97795 0.86923 0.80589 0.84065 0.76919 1.20880 1.22477 1.19337 1.60748 1.58175 1.07751 1.01209 1.20377 0.99273 0.92829 0.83767 0.91582 1.21739 0.96120 0.99391 1.01565 1.23349 0.81527 0.86210 0.92935 1.68566 1.30202 1.10962 1.23107 1.19212 0.84597 0.86632 0.84104 1.41679 1.47693 1.23256 1.22828 1.68035 1.17691 1.18668 1.34061 1.18866 0.85482 0.84355 0.85705 1.41393 1.42602 1.33387 1.09044 1.17595 0.93884 0.96558 0.84795 1.20909 0.96104 1.02683 0.97039 1.20907 0.98330 0.97675 0.95097 1.21114 0.92788 1.01514 1.00378 1.21008 0.98201 0.98454 0.94436 1.21078 0.97340 0.99405 0.95149 1.68410 1.28679 1.36271 1.02820 0.93517 0.95389 0.92836 0.92742 0.84829 0.90852 0.91226 0.93540 0.75545 0.74679 0.73519 0.85768 0.85786 0.86128 0.85906 0.85305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.03 8.63 37.16 0.32 -3.71 16 2 C 0.18 4.26 1.98 -68.87 -0.14 4.12 16 3 H 0.04 0.91 6.17 -51.92 -0.32 0.59 16 4 C -0.49 -13.84 9.42 -34.44 -0.32 -14.17 16 5 H 0.08 2.58 8.06 -52.48 -0.42 2.16 16 6 C 0.07 1.92 5.45 -17.82 -0.10 1.82 16 7 N -0.90 -27.64 13.96 55.43 0.77 -26.86 16 8 Si 0.88 21.89 24.37 -169.99 -4.14 17.75 16 9 H -0.28 -6.84 6.87 56.52 0.39 -6.45 16 10 H -0.30 -7.39 7.11 56.52 0.40 -6.99 16 11 H -0.27 -6.31 6.53 56.52 0.37 -5.94 16 12 N -0.65 -13.42 5.88 -102.17 -0.60 -14.02 16 13 C 0.15 2.67 2.85 -68.86 -0.20 2.47 16 14 H 0.07 1.19 7.10 -51.93 -0.37 0.82 16 15 C -0.13 -2.13 9.38 37.16 0.35 -1.79 16 16 C 0.44 7.43 6.30 -156.58 -0.99 6.45 16 17 N -0.60 -9.81 10.21 -11.51 -0.12 -9.93 16 18 C 0.62 8.81 8.76 -322.12 -2.82 5.99 16 19 N -0.81 -7.90 9.05 29.86 0.27 -7.63 16 20 N -0.64 -9.01 7.60 -14.72 -0.11 -9.12 16 21 C 0.62 8.93 8.18 -321.93 -2.63 6.30 16 22 N -0.63 -7.17 5.46 -11.51 -0.06 -7.24 16 23 C 0.17 1.75 6.20 -83.72 -0.52 1.23 16 24 C -0.15 -1.27 9.97 -39.39 -0.39 -1.67 16 25 C -0.10 -0.77 10.04 -39.61 -0.40 -1.17 16 26 C -0.14 -1.04 10.04 -39.55 -0.40 -1.44 16 27 C -0.10 -0.85 10.04 -39.61 -0.40 -1.25 16 28 C -0.11 -1.13 8.57 -39.38 -0.34 -1.46 16 29 N -0.63 -10.01 10.45 -11.48 -0.12 -10.13 16 30 H 0.05 1.06 3.27 -51.93 -0.17 0.89 16 31 H 0.03 0.53 7.43 -51.93 -0.39 0.15 16 32 H 0.05 1.15 8.13 -51.93 -0.42 0.72 16 33 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 34 H 0.33 6.94 8.05 -39.29 -0.32 6.63 16 35 H 0.07 1.25 7.43 -51.92 -0.39 0.87 16 36 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.41 3.06 8.95 -40.82 -0.37 2.69 16 39 H 0.42 3.66 8.95 -40.82 -0.37 3.30 16 40 H 0.43 4.00 8.95 -40.82 -0.37 3.64 16 41 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 42 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 43 H 0.12 0.64 8.06 -52.48 -0.42 0.22 16 44 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 45 H 0.13 1.48 6.63 -52.48 -0.35 1.14 16 LS Contribution 369.23 15.07 5.56 5.56 Total: -1.00 -32.68 369.23 -13.47 -46.15 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: -5.95 Total: 13.73 kcal Atomic # 6 Polarization: 10.70 SS G_CDS: -8.97 Total: 1.73 kcal Atomic # 7 Polarization: -84.96 SS G_CDS: 0.03 Total: -84.93 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.14 Total: 17.75 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.68 -13.47 -46.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364746481.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.544 kcal (2) G-P(sol) polarization free energy of solvation -32.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds