Wall clock time and date at job start Tue Mar 31 2020 15:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.46908 * 2 1 4 4 N 1.46904 * 109.46946 * 119.99393 * 2 1 3 5 5 C 1.46896 * 111.00003 * 275.27383 * 4 2 1 6 6 H 1.09003 * 109.47185 * 35.84149 * 5 4 2 7 7 C 1.53003 * 109.47018 * 155.83696 * 5 4 2 8 8 C 1.50704 * 109.47329 * 275.83662 * 5 4 2 9 9 H 1.07991 * 119.99681 * 0.02562 * 8 5 4 10 10 C 1.37878 * 119.99794 * 179.97438 * 8 5 4 11 11 N 1.31516 * 119.99663 * 179.97438 * 10 8 5 12 12 Si 1.86800 * 120.00413 * 0.02562 * 10 8 5 13 13 H 1.48501 * 109.47190 * 89.99273 * 12 10 8 14 14 H 1.48496 * 109.47095 * 209.99697 * 12 10 8 15 15 H 1.48497 * 109.46709 * 329.99826 * 12 10 8 16 16 C 1.50696 * 109.47520 * 239.99543 * 2 1 3 17 17 N 1.32170 * 119.90991 * 285.00555 * 16 2 1 18 18 C 1.33101 * 120.08466 * 179.97438 * 17 16 2 19 19 N 1.37997 * 120.04263 * 179.97438 * 18 17 16 20 20 N 1.32863 * 119.91333 * 0.02562 * 18 17 16 21 21 C 1.32845 * 119.82681 * 359.97438 * 20 18 17 22 22 N 1.38127 * 120.04570 * 180.02562 * 21 20 18 23 23 C 1.39835 * 120.00342 * 354.78457 * 22 21 20 24 24 C 1.38897 * 120.07031 * 325.67280 * 23 22 21 25 25 C 1.38103 * 119.92296 * 179.69577 * 24 23 22 26 26 C 1.38286 * 120.07691 * 0.57480 * 25 24 23 27 27 C 1.38285 * 120.14269 * 359.71592 * 26 25 24 28 28 C 1.38106 * 120.07270 * 359.97438 * 27 26 25 29 29 N 1.32131 * 119.91332 * 104.72160 * 16 2 1 30 30 H 1.09005 * 109.46750 * 175.59770 * 1 2 3 31 31 H 1.08995 * 109.47186 * 295.60019 * 1 2 3 32 32 H 1.08998 * 109.46658 * 55.60061 * 1 2 3 33 33 H 1.00902 * 110.99797 * 151.31678 * 4 2 1 34 34 H 1.08998 * 109.46838 * 56.07096 * 7 5 4 35 35 H 1.09003 * 109.47226 * 296.06850 * 7 5 4 36 36 H 1.09001 * 109.47248 * 176.06749 * 7 5 4 37 37 H 0.97001 * 119.99891 * 180.02562 * 11 10 8 38 38 H 0.97003 * 120.00346 * 0.02562 * 19 18 17 39 39 H 0.96999 * 119.99855 * 179.97438 * 19 18 17 40 40 H 0.97002 * 119.99827 * 174.79099 * 22 21 20 41 41 H 1.08000 * 120.03850 * 359.97438 * 24 23 22 42 42 H 1.08008 * 119.96341 * 180.31473 * 25 24 23 43 43 H 1.08002 * 119.93282 * 179.70557 * 26 25 24 44 44 H 1.08004 * 119.96518 * 180.02562 * 27 26 25 45 45 H 1.08002 * 120.03922 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6924 1.1996 5 6 2.0763 0.2212 2.3485 6 1 1.2403 0.9189 2.2994 7 6 1.9920 -0.5853 3.6460 8 6 3.3732 0.9881 2.3171 9 1 4.0840 0.8145 1.5228 10 6 3.6517 1.9121 3.3018 11 7 4.7837 2.5810 3.2746 12 14 2.4218 2.2129 4.6753 13 1 2.7065 1.2922 5.8051 14 1 2.5344 3.6183 5.1415 15 1 1.0469 1.9672 4.1710 16 6 2.0325 -0.7105 -1.2303 17 7 1.9725 -2.0289 -1.3007 18 6 2.4148 -2.6600 -2.3859 19 7 2.3523 -4.0366 -2.4582 20 7 2.9175 -1.9628 -3.3991 21 6 2.9761 -0.6377 -3.3247 22 7 3.4973 0.0916 -4.3755 23 6 4.0633 -0.5675 -5.4713 24 6 4.7489 -1.7613 -5.2873 25 6 5.3012 -2.4129 -6.3725 26 6 5.1825 -1.8720 -7.6396 27 6 4.5057 -0.6804 -7.8254 28 6 3.9456 -0.0270 -6.7454 29 7 2.5265 -0.0134 -2.2382 30 1 -0.3633 -1.0247 -0.0789 31 1 -0.3633 0.4440 0.9267 32 1 -0.3632 0.5806 -0.8480 33 1 2.9193 -1.1167 1.0302 34 1 2.7872 -1.3306 3.6628 35 1 1.0247 -1.0847 3.7012 36 1 2.1041 0.0849 4.4983 37 1 4.9798 3.2308 3.9676 38 1 1.9855 -4.5451 -1.7180 39 1 2.6745 -4.4959 -3.2496 40 1 3.4709 1.0610 -4.3533 41 1 4.8461 -2.1819 -4.2973 42 1 5.8301 -3.3439 -6.2308 43 1 5.6195 -2.3811 -8.4860 44 1 4.4144 -0.2608 -8.8164 45 1 3.4175 0.9037 -6.8910 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364746483.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:46 Heat of formation + Delta-G solvation = 119.504122 kcal Electronic energy + Delta-G solvation = -27382.016637 eV Core-core repulsion = 23628.523934 eV Total energy + Delta-G solvation = -3753.492703 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.171 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.51999 -39.55691 -37.06187 -36.50728 -35.13047 -33.29348 -32.15917 -31.60958 -31.06343 -30.71358 -29.26678 -27.66926 -24.95909 -24.89267 -24.07548 -22.61193 -22.21149 -20.86447 -19.95138 -19.04803 -18.16362 -17.32775 -16.88639 -16.43881 -16.09906 -15.76371 -15.54306 -15.07908 -14.70862 -14.68511 -14.13153 -14.02055 -13.90624 -13.50790 -13.23449 -13.08419 -12.74215 -12.37791 -12.24263 -12.12059 -11.82405 -11.74365 -11.31267 -11.21957 -11.12443 -10.97984 -10.65750 -10.51979 -9.98162 -9.82756 -9.54491 -9.39519 -9.28917 -9.23290 -9.02079 -8.89141 -8.58331 -8.01733 -7.40534 -6.10645 -4.12129 0.95716 1.26717 1.33639 1.66686 2.49225 3.11817 3.27506 3.37487 3.40147 3.66869 3.92826 4.14221 4.38432 4.42617 4.74669 4.80093 4.90907 5.01027 5.16091 5.25058 5.26333 5.38464 5.52654 5.75685 5.83221 5.90714 6.06124 6.16260 6.18834 6.27067 6.39243 6.40779 6.42942 6.50209 6.55976 6.59757 6.67857 6.70595 6.76768 6.95954 7.01801 7.19775 7.23235 7.43790 7.56853 7.64692 8.00020 8.34183 8.47259 8.70313 8.91220 9.52091 11.02429 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.017595 B = 0.002864 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.972876 B = 9773.527004 C =10500.015039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.154 3.846 3 H 0.084 0.916 4 N -0.659 5.659 5 C 0.175 3.825 6 H 0.036 0.964 7 C -0.135 4.135 8 C -0.547 4.547 9 H 0.071 0.929 10 C 0.073 3.927 11 N -0.897 5.897 12 Si 0.893 3.107 13 H -0.278 1.278 14 H -0.299 1.299 15 H -0.265 1.265 16 C 0.442 3.558 17 N -0.602 5.602 18 C 0.620 3.380 19 N -0.808 5.808 20 N -0.646 5.646 21 C 0.621 3.379 22 N -0.631 5.631 23 C 0.169 3.831 24 C -0.112 4.112 25 C -0.102 4.102 26 C -0.142 4.142 27 C -0.101 4.101 28 C -0.150 4.150 29 N -0.621 5.621 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.048 0.952 33 H 0.338 0.662 34 H 0.050 0.950 35 H 0.035 0.965 36 H 0.039 0.961 37 H 0.264 0.736 38 H 0.419 0.581 39 H 0.413 0.587 40 H 0.427 0.573 41 H 0.134 0.866 42 H 0.122 0.878 43 H 0.120 0.880 44 H 0.123 0.877 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.719 -10.460 -19.768 22.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.042 3.958 3 H 0.102 0.898 4 N -0.291 5.291 5 C 0.066 3.934 6 H 0.054 0.946 7 C -0.193 4.193 8 C -0.586 4.586 9 H 0.089 0.911 10 C -0.130 4.130 11 N -0.535 5.535 12 Si 0.723 3.277 13 H -0.206 1.206 14 H -0.227 1.227 15 H -0.190 1.190 16 C 0.165 3.835 17 N -0.335 5.335 18 C 0.252 3.748 19 N -0.357 5.357 20 N -0.385 5.385 21 C 0.256 3.744 22 N -0.261 5.261 23 C 0.073 3.927 24 C -0.133 4.133 25 C -0.120 4.120 26 C -0.161 4.161 27 C -0.120 4.120 28 C -0.171 4.171 29 N -0.353 5.353 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.067 0.933 33 H 0.155 0.845 34 H 0.069 0.931 35 H 0.054 0.946 36 H 0.057 0.943 37 H 0.073 0.927 38 H 0.251 0.749 39 H 0.244 0.756 40 H 0.266 0.734 41 H 0.152 0.848 42 H 0.140 0.860 43 H 0.138 0.862 44 H 0.141 0.859 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.221 -10.651 -19.545 22.655 hybrid contribution 0.413 0.798 0.494 1.026 sum -3.807 -9.853 -19.050 21.783 Atomic orbital electron populations 1.21738 0.93258 1.02130 1.01640 1.20269 0.95608 0.96272 0.83683 0.89810 1.60905 1.33039 1.32628 1.02480 1.19662 0.96815 0.89927 0.86980 0.94571 1.21990 0.99585 0.99686 0.98015 1.21726 1.03222 1.21794 1.11864 0.91134 1.25010 0.95044 0.95158 0.97781 1.69927 1.23415 1.25645 1.34513 0.86775 0.82443 0.75942 0.82509 1.20553 1.22665 1.18954 1.23377 0.82962 0.85140 0.92056 1.68534 1.27967 1.11317 1.25679 1.19205 0.83801 0.87508 0.84263 1.41631 1.69124 1.01111 1.23874 1.68048 1.31463 1.07059 1.31972 1.18887 0.85017 0.84713 0.85798 1.41432 1.60254 1.08799 1.15627 1.17634 0.94863 0.94369 0.85810 1.21172 0.96585 0.95301 1.00234 1.21008 0.99133 0.99616 0.92277 1.21094 1.01148 0.96623 0.97254 1.20881 0.97654 0.95333 0.98117 1.20862 1.03440 1.02057 0.90712 1.68447 1.23197 1.41282 1.02372 0.91912 0.91220 0.93289 0.84488 0.93130 0.94579 0.94303 0.92658 0.74939 0.75617 0.73387 0.84810 0.85955 0.86222 0.85857 0.85782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.12 9.40 37.16 0.35 -1.77 16 2 C 0.15 2.95 2.85 -68.86 -0.20 2.75 16 3 H 0.08 1.80 7.60 -51.93 -0.39 1.41 16 4 N -0.66 -13.64 5.89 -102.16 -0.60 -14.25 16 5 C 0.18 4.08 1.98 -68.86 -0.14 3.94 16 6 H 0.04 0.86 6.13 -51.93 -0.32 0.54 16 7 C -0.13 -2.95 9.02 37.16 0.34 -2.62 16 8 C -0.55 -15.15 8.80 -34.44 -0.30 -15.45 16 9 H 0.07 2.16 8.00 -52.49 -0.42 1.74 16 10 C 0.07 2.08 5.45 -17.82 -0.10 1.99 16 11 N -0.90 -27.39 13.96 55.43 0.77 -26.62 16 12 Si 0.89 21.86 24.40 -169.99 -4.15 17.72 16 13 H -0.28 -6.67 6.84 56.52 0.39 -6.28 16 14 H -0.30 -7.36 7.11 56.52 0.40 -6.96 16 15 H -0.26 -6.16 6.53 56.52 0.37 -5.79 16 16 C 0.44 8.12 6.30 -156.58 -0.99 7.13 16 17 N -0.60 -10.20 10.22 -11.52 -0.12 -10.32 16 18 C 0.62 9.16 8.76 -322.13 -2.82 6.34 16 19 N -0.81 -8.05 9.05 29.85 0.27 -7.78 16 20 N -0.65 -9.71 7.34 -14.72 -0.11 -9.82 16 21 C 0.62 9.96 8.20 -321.93 -2.64 7.31 16 22 N -0.63 -8.26 5.47 -11.51 -0.06 -8.33 16 23 C 0.17 2.02 6.27 -83.72 -0.53 1.50 16 24 C -0.11 -1.34 8.57 -39.39 -0.34 -1.67 16 25 C -0.10 -0.98 10.04 -39.61 -0.40 -1.38 16 26 C -0.14 -1.22 10.04 -39.55 -0.40 -1.62 16 27 C -0.10 -0.87 10.04 -39.61 -0.40 -1.27 16 28 C -0.15 -1.47 9.97 -39.39 -0.39 -1.86 16 29 N -0.62 -11.17 10.45 -11.48 -0.12 -11.29 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.07 1.15 7.35 -51.93 -0.38 0.76 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.34 7.38 8.03 -39.29 -0.32 7.07 16 34 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.04 0.88 3.22 -51.93 -0.17 0.71 16 37 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 38 H 0.42 3.54 8.95 -40.82 -0.37 3.18 16 39 H 0.41 3.16 8.95 -40.82 -0.37 2.79 16 40 H 0.43 4.87 8.94 -40.82 -0.36 4.51 16 41 H 0.13 1.79 6.35 -52.49 -0.33 1.46 16 42 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 43 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 44 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 45 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 LS Contribution 369.57 15.07 5.57 5.57 Total: -1.00 -32.35 369.57 -13.48 -45.83 By element: Atomic # 1 Polarization: 21.93 SS G_CDS: -5.99 Total: 15.94 kcal Atomic # 6 Polarization: 12.28 SS G_CDS: -8.95 Total: 3.34 kcal Atomic # 7 Polarization: -88.43 SS G_CDS: 0.03 Total: -88.40 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.15 Total: 17.72 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.35 -13.48 -45.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364746483.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.336 kcal (2) G-P(sol) polarization free energy of solvation -32.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds