Wall clock time and date at job start Tue Mar 31 2020 15:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47333 * 2 1 4 4 C 1.50694 * 109.47538 * 119.99940 * 2 1 3 5 5 H 1.08004 * 120.00142 * 119.99421 * 4 2 1 6 6 C 1.37879 * 120.00100 * 300.00062 * 4 2 1 7 7 N 1.31515 * 119.99643 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00304 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46939 * 90.00088 * 8 6 4 10 10 H 1.48493 * 109.47551 * 209.99905 * 8 6 4 11 11 H 1.48506 * 109.47044 * 330.00542 * 8 6 4 12 12 N 1.46896 * 109.46815 * 240.00064 * 2 1 3 13 13 C 1.46901 * 111.00387 * 306.04187 * 12 2 1 14 14 C 1.38286 * 111.00272 * 69.99937 * 12 2 1 15 15 N 1.31496 * 126.36195 * 349.29279 * 14 12 2 16 16 N 1.28514 * 110.06406 * 179.74954 * 15 14 12 17 17 C 1.31302 * 109.91726 * 0.41654 * 16 15 14 18 18 C 1.47749 * 126.47005 * 179.85602 * 17 16 15 19 19 C 1.39750 * 120.13678 * 5.62838 * 18 17 16 20 20 N 1.31909 * 119.83922 * 179.97438 * 19 18 17 21 21 C 1.32270 * 120.12199 * 359.97438 * 20 19 18 22 22 C 1.38404 * 120.27015 * 0.27577 * 21 20 19 23 23 N 1.32032 * 120.16070 * 359.43596 * 22 21 20 24 24 N 1.36357 * 126.36362 * 169.29542 * 14 12 2 25 25 C 1.46498 * 127.15550 * 0.02562 * 24 14 12 26 26 H 1.08996 * 115.54800 * 91.21106 * 25 24 14 27 27 C 1.53006 * 117.49464 * 236.87853 * 25 24 14 28 28 C 1.52996 * 117.50058 * 305.53720 * 25 24 14 29 29 H 1.08994 * 117.49797 * 145.02489 * 28 25 24 30 30 C 1.52999 * 117.49807 * 0.02562 * 28 25 24 31 31 H 1.08998 * 109.47135 * 59.99874 * 1 2 3 32 32 H 1.09000 * 109.47377 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.46625 * 299.99781 * 1 2 3 34 34 H 0.97001 * 119.99451 * 180.02562 * 7 6 4 35 35 H 1.08994 * 109.47655 * 190.42533 * 13 12 2 36 36 H 1.09002 * 109.47216 * 310.43069 * 13 12 2 37 37 H 1.09001 * 109.46413 * 70.42395 * 13 12 2 38 38 H 1.08001 * 120.07744 * 359.95649 * 19 18 17 39 39 H 1.08000 * 119.86553 * 180.02562 * 21 20 19 40 40 H 1.08006 * 119.91788 * 179.72207 * 22 21 20 41 41 H 1.09007 * 117.49664 * 214.97956 * 27 25 24 42 42 H 1.08991 * 117.50196 * 359.97438 * 27 25 24 43 43 H 1.09003 * 109.46925 * 68.16959 * 30 28 25 44 44 H 1.09007 * 109.47335 * 188.17084 * 30 28 25 45 45 H 1.08998 * 109.47327 * 308.17389 * 30 28 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6994 -0.2393 2.4827 7 7 0.9437 0.8302 2.6033 8 14 2.3216 -1.1202 4.0079 9 1 3.6299 -0.5457 4.4123 10 1 1.3435 -0.9492 5.1120 11 1 2.4862 -2.5661 3.7119 12 7 2.0196 -0.6925 -1.1994 13 6 1.4343 -2.0355 -1.3078 14 6 1.7685 0.0509 -2.3381 15 7 1.0086 1.1211 -2.4187 16 7 0.9993 1.5654 -3.6245 17 6 1.7452 0.8013 -4.3886 18 6 1.9881 0.9761 -5.8355 19 6 1.4941 2.1025 -6.4988 20 7 1.7148 2.2528 -7.7906 21 6 2.4023 1.3404 -8.4571 22 6 2.8894 0.2204 -7.8060 23 7 2.6798 0.0617 -6.5121 24 7 2.2627 -0.1896 -3.5860 25 6 3.1580 -1.2771 -3.9886 26 1 2.6669 -2.1859 -4.3363 27 6 4.4832 -0.8928 -4.6498 28 6 4.4703 -1.4338 -3.2179 29 1 4.8428 -2.4457 -3.0589 30 6 4.7470 -0.4431 -2.0852 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8901 34 1 0.7097 1.1618 3.4844 35 1 1.9466 -2.5930 -2.0918 36 1 1.5460 -2.5583 -0.3579 37 1 0.3758 -1.9516 -1.5540 38 1 0.9327 2.8480 -5.9552 39 1 2.5810 1.4679 -9.5146 40 1 3.4463 -0.5233 -8.3568 41 1 4.8642 -1.5492 -5.4323 42 1 4.6887 0.1689 -4.7856 43 1 4.0468 -0.6200 -1.2688 44 1 5.7669 -0.5786 -1.7250 45 1 4.6244 0.5749 -2.4549 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001417482445.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:31:43 Heat of formation + Delta-G solvation = 188.896612 kcal Electronic energy + Delta-G solvation = -29021.892023 eV Core-core repulsion = 25271.408404 eV Total energy + Delta-G solvation = -3750.483619 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.171 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.65578 -41.02914 -37.97707 -37.38770 -34.57392 -33.05707 -32.81906 -32.10618 -29.28837 -28.71233 -28.13862 -25.94635 -25.26971 -24.76142 -24.42325 -23.30438 -21.84644 -20.89642 -20.35095 -19.11447 -17.51845 -17.32454 -16.92098 -16.59672 -16.30483 -15.80450 -15.43627 -15.12817 -14.82700 -14.46392 -14.32385 -13.82987 -13.32729 -13.06746 -12.88357 -12.58586 -12.44564 -12.14754 -11.84007 -11.63424 -11.54297 -11.45746 -11.34647 -11.21020 -10.95803 -10.84995 -10.72394 -10.59381 -10.35855 -10.17798 -10.09005 -10.06310 -9.76403 -9.59107 -9.30060 -8.93926 -8.72380 -8.43084 -7.43422 -6.06703 -4.14125 0.29013 0.85818 2.19345 2.44258 3.12657 3.27406 3.34436 3.35806 3.49630 3.58337 3.67873 4.02427 4.18861 4.27646 4.44945 4.52014 4.62884 4.70875 4.88360 4.96216 5.02962 5.24954 5.33570 5.42808 5.52320 5.59674 5.71486 5.83183 5.93048 5.95321 5.99533 6.09662 6.16137 6.24081 6.31849 6.41437 6.69366 6.84888 6.96644 7.02922 7.06096 7.17666 7.39823 7.51382 7.56444 7.70821 7.92001 8.23822 8.38136 8.86826 9.10821 9.50720 10.99546 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.022263 B = 0.003590 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.404178 B = 7797.648680 C = 8576.361378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.226 3.774 3 H 0.053 0.947 4 C -0.514 4.514 5 H 0.065 0.935 6 C 0.065 3.935 7 N -0.883 5.883 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.446 5.446 13 C 0.036 3.964 14 C 0.406 3.594 15 N -0.306 5.306 16 N -0.250 5.250 17 C 0.178 3.822 18 C 0.173 3.827 19 C 0.090 3.910 20 N -0.433 5.433 21 C 0.042 3.958 22 C 0.056 3.944 23 N -0.425 5.425 24 N -0.438 5.438 25 C 0.070 3.930 26 H 0.126 0.874 27 C -0.140 4.140 28 C -0.128 4.128 29 H 0.115 0.885 30 C -0.145 4.145 31 H 0.038 0.962 32 H 0.023 0.977 33 H 0.091 0.909 34 H 0.263 0.737 35 H 0.050 0.950 36 H 0.097 0.903 37 H 0.032 0.968 38 H 0.182 0.818 39 H 0.170 0.830 40 H 0.172 0.828 41 H 0.104 0.896 42 H 0.090 0.910 43 H 0.118 0.882 44 H 0.055 0.945 45 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.927 -4.989 -19.359 20.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.122 3.878 3 H 0.070 0.930 4 C -0.552 4.552 5 H 0.083 0.917 6 C -0.138 4.138 7 N -0.521 5.521 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.169 5.169 13 C -0.112 4.112 14 C 0.051 3.949 15 N -0.153 5.153 16 N -0.095 5.095 17 C -0.086 4.086 18 C 0.032 3.968 19 C -0.072 4.072 20 N -0.147 5.147 21 C -0.118 4.118 22 C -0.106 4.106 23 N -0.142 5.142 24 N -0.132 5.132 25 C -0.035 4.035 26 H 0.144 0.856 27 C -0.178 4.178 28 C -0.147 4.147 29 H 0.133 0.867 30 C -0.202 4.202 31 H 0.057 0.943 32 H 0.042 0.958 33 H 0.109 0.891 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.116 0.884 37 H 0.051 0.949 38 H 0.199 0.801 39 H 0.187 0.813 40 H 0.189 0.811 41 H 0.123 0.877 42 H 0.109 0.891 43 H 0.136 0.864 44 H 0.074 0.926 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 5.441 -3.852 -18.679 19.833 hybrid contribution 0.462 -1.463 0.287 1.561 sum 5.903 -5.315 -18.392 20.034 Atomic orbital electron populations 1.22432 0.98912 0.99206 1.02664 1.19434 0.91455 0.94598 0.82276 0.92956 1.20989 1.31875 1.13049 0.89329 0.91728 1.24885 0.94968 0.95044 0.98920 1.69917 1.35986 1.22522 1.23682 0.86488 0.78549 0.79860 0.82411 1.20645 1.21273 1.19904 1.59267 1.55257 1.03244 0.99116 1.22363 0.96818 0.88505 1.03474 1.23200 0.91802 0.95234 0.84620 1.75046 1.18369 1.11761 1.10153 1.74300 1.15748 1.21583 0.97818 1.21590 1.03661 0.92080 0.91249 1.19110 0.95459 0.92574 0.89637 1.23785 0.96553 0.96435 0.90470 1.68540 1.10738 1.27788 1.07627 1.23843 0.94789 0.91365 1.01810 1.23713 0.98247 0.98020 0.90586 1.68535 1.10459 1.27122 1.08083 1.45498 1.37243 1.22857 1.07612 1.21819 0.84962 0.90059 1.06633 0.85627 1.23217 0.96776 1.02018 0.95809 1.22856 0.96411 1.01810 0.93614 0.86690 1.21779 1.03167 0.96263 0.99022 0.94325 0.95760 0.89076 0.92732 0.93096 0.88406 0.94921 0.80106 0.81267 0.81089 0.87748 0.89137 0.86428 0.92614 0.94046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.24 8.19 37.16 0.30 -3.93 16 2 C 0.23 5.53 2.01 -68.87 -0.14 5.39 16 3 H 0.05 1.47 7.91 -51.93 -0.41 1.06 16 4 C -0.51 -13.16 7.82 -34.44 -0.27 -13.43 16 5 H 0.06 1.61 7.18 -52.48 -0.38 1.23 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 7 N -0.88 -24.59 11.32 55.43 0.63 -23.96 16 8 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 9 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 12 N -0.45 -9.08 1.97 -176.14 -0.35 -9.42 16 13 C 0.04 0.64 8.39 60.07 0.50 1.14 16 14 C 0.41 8.16 5.59 -319.09 -1.79 6.38 16 15 N -0.31 -6.79 9.32 30.28 0.28 -6.51 16 16 N -0.25 -4.98 11.89 32.58 0.39 -4.59 16 17 C 0.18 3.06 7.76 -153.73 -1.19 1.87 16 18 C 0.17 2.41 6.71 -82.85 -0.56 1.85 16 19 C 0.09 1.15 10.89 -16.95 -0.18 0.96 16 20 N -0.43 -4.94 10.49 -12.72 -0.13 -5.07 16 21 C 0.04 0.35 11.21 -17.30 -0.19 0.15 16 22 C 0.06 0.46 11.22 -17.40 -0.20 0.26 16 23 N -0.43 -4.95 7.34 -9.66 -0.07 -5.02 16 24 N -0.44 -7.43 2.83 -107.65 -0.31 -7.74 16 25 C 0.07 0.94 4.46 -67.93 -0.30 0.63 16 26 H 0.13 1.53 8.14 -51.93 -0.42 1.10 16 27 C -0.14 -1.60 7.99 -26.69 -0.21 -1.81 16 28 C -0.13 -1.62 6.41 -90.58 -0.58 -2.20 16 29 H 0.12 1.22 8.14 -51.93 -0.42 0.79 16 30 C -0.15 -2.27 8.70 37.16 0.32 -1.95 16 31 H 0.04 0.93 5.96 -51.93 -0.31 0.62 16 32 H 0.02 0.55 6.57 -51.93 -0.34 0.21 16 33 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 34 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 35 H 0.05 0.76 6.93 -51.93 -0.36 0.40 16 36 H 0.10 1.80 6.64 -51.93 -0.34 1.46 16 37 H 0.03 0.60 6.83 -51.93 -0.35 0.24 16 38 H 0.18 2.24 7.88 -52.49 -0.41 1.83 16 39 H 0.17 0.77 8.06 -52.49 -0.42 0.34 16 40 H 0.17 0.75 8.06 -52.48 -0.42 0.33 16 41 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.09 1.19 8.06 -51.93 -0.42 0.77 16 43 H 0.12 2.20 5.25 -51.93 -0.27 1.93 16 44 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.04 0.71 7.98 -51.93 -0.41 0.30 16 LS Contribution 358.91 15.07 5.41 5.41 Total: -1.00 -30.34 358.91 -9.75 -40.09 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -6.00 Total: 4.47 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: -4.58 Total: -3.08 kcal Atomic # 7 Polarization: -62.76 SS G_CDS: 0.44 Total: -62.32 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.34 -9.75 -40.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417482445.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 228.987 kcal (2) G-P(sol) polarization free energy of solvation -30.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 198.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 188.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds