Wall clock time and date at job start Tue Mar 31 2020 15:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47942 * 2 1 4 4 C 1.50708 * 109.46941 * 119.99854 * 2 1 3 5 5 H 1.08005 * 119.99695 * 119.99855 * 4 2 1 6 6 C 1.37872 * 119.99866 * 300.00066 * 4 2 1 7 7 N 1.31510 * 120.00207 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 119.99891 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47123 * 89.99671 * 8 6 4 10 10 H 1.48497 * 109.47155 * 209.99969 * 8 6 4 11 11 H 1.48499 * 109.46813 * 329.99408 * 8 6 4 12 12 N 1.46903 * 109.47372 * 239.99802 * 2 1 3 13 13 C 1.46904 * 110.99742 * 306.04963 * 12 2 1 14 14 C 1.38277 * 110.99857 * 70.00042 * 12 2 1 15 15 N 1.31491 * 126.36644 * 0.03037 * 14 12 2 16 16 N 1.28520 * 110.06936 * 179.97438 * 15 14 12 17 17 C 1.31292 * 109.91124 * 0.02562 * 16 15 14 18 18 C 1.47751 * 126.47142 * 179.97438 * 17 16 15 19 19 C 1.39750 * 120.13175 * 358.82175 * 18 17 16 20 20 N 1.31911 * 119.84054 * 180.23072 * 19 18 17 21 21 C 1.32270 * 120.11698 * 359.51902 * 20 19 18 22 22 C 1.38400 * 120.27543 * 0.46191 * 21 20 19 23 23 N 1.32029 * 120.15776 * 359.79472 * 22 21 20 24 24 N 1.36355 * 126.36406 * 180.29827 * 14 12 2 25 25 C 1.46505 * 127.15495 * 359.97438 * 24 14 12 26 26 H 1.08999 * 115.54580 * 89.81308 * 25 24 14 27 27 C 1.52993 * 117.49838 * 304.14353 * 25 24 14 28 28 C 1.52996 * 117.49992 * 235.48051 * 25 24 14 29 29 H 1.09000 * 117.49825 * 0.02562 * 28 25 24 30 30 C 1.53001 * 117.50042 * 214.97771 * 28 25 24 31 31 H 1.08990 * 109.47611 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47136 * 300.00686 * 1 2 3 33 33 H 1.09006 * 109.46838 * 59.99924 * 1 2 3 34 34 H 0.96999 * 120.00162 * 180.02562 * 7 6 4 35 35 H 1.08994 * 109.47133 * 183.94847 * 13 12 2 36 36 H 1.09004 * 109.47300 * 303.95724 * 13 12 2 37 37 H 1.09001 * 109.47022 * 63.95260 * 13 12 2 38 38 H 1.07997 * 120.07988 * 359.95908 * 19 18 17 39 39 H 1.08007 * 119.86084 * 180.20668 * 21 20 19 40 40 H 1.07996 * 119.92110 * 179.76514 * 22 21 20 41 41 H 1.08995 * 117.50061 * 0.02562 * 27 25 24 42 42 H 1.09006 * 117.49613 * 144.99941 * 27 25 24 43 43 H 1.09006 * 109.46633 * 60.00451 * 30 28 25 44 44 H 1.08997 * 109.47546 * 180.02562 * 30 28 25 45 45 H 1.09004 * 109.47438 * 300.00725 * 30 28 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6532 -1.5886 1.1314 6 6 1.6991 -0.2393 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3224 -1.1195 4.0080 9 1 3.6304 -0.5440 4.4119 10 1 1.3443 -0.9489 5.1123 11 1 2.4877 -2.5653 3.7123 12 7 2.0197 -0.6925 -1.1994 13 6 1.4342 -2.0355 -1.3077 14 6 1.7686 0.0508 -2.3380 15 7 1.1757 1.2233 -2.3886 16 7 1.1059 1.6301 -3.6058 17 6 1.6493 0.7422 -4.4058 18 6 1.7657 0.8390 -5.8755 19 6 1.2472 1.9485 -6.5487 20 7 1.3502 2.0269 -7.8615 21 6 1.9510 1.0626 -8.5388 22 6 2.4666 -0.0382 -7.8770 23 7 2.3651 -0.1302 -6.5638 24 7 2.0854 -0.2982 -3.6175 25 6 2.7544 -1.5239 -4.0606 26 1 2.0959 -2.3603 -4.2953 27 6 4.1159 -1.8485 -3.4427 28 6 4.0279 -1.3718 -4.8947 29 1 4.3682 -0.3596 -5.1135 30 6 4.2801 -2.4056 -5.9940 31 1 -0.3634 -1.0275 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5139 -0.8900 34 1 0.7094 1.1619 3.4843 35 1 1.8663 -2.5521 -2.1647 36 1 1.6464 -2.5988 -0.3990 37 1 0.3555 -1.9520 -1.4399 38 1 0.7595 2.7378 -5.9960 39 1 2.0360 1.1326 -9.6132 40 1 2.9526 -0.8240 -8.4361 41 1 4.5137 -1.1502 -2.7064 42 1 4.3532 -2.8984 -3.2710 43 1 3.4606 -2.3794 -6.7123 44 1 5.2164 -2.1747 -6.5021 45 1 4.3431 -3.3994 -5.5508 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001417482498.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:31:50 Heat of formation + Delta-G solvation = 185.216650 kcal Electronic energy + Delta-G solvation = -28727.474295 eV Core-core repulsion = 24976.831101 eV Total energy + Delta-G solvation = -3750.643194 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.171 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.62241 -41.02421 -38.02728 -37.39708 -34.54840 -33.21570 -32.90711 -32.13524 -29.26413 -28.65871 -28.41312 -26.01604 -25.28436 -24.76584 -24.39003 -23.27973 -21.80979 -20.96640 -20.35873 -19.36810 -17.76265 -17.40217 -16.94804 -16.48849 -16.09380 -15.86018 -15.41689 -14.93653 -14.71279 -14.40680 -14.32457 -13.93938 -13.57868 -13.18967 -13.12671 -12.98910 -12.55987 -12.25379 -11.79536 -11.63843 -11.58541 -11.52958 -11.38033 -11.21238 -10.97202 -10.91112 -10.76698 -10.62809 -10.49388 -10.23444 -10.10591 -10.06295 -9.80784 -9.62212 -9.26809 -9.00706 -8.84365 -8.42895 -7.39293 -6.06530 -4.13797 0.29866 0.86289 2.21352 2.43673 3.14870 3.27830 3.34479 3.36071 3.47369 3.54714 3.68356 4.03091 4.18355 4.27846 4.44049 4.50267 4.56602 4.65457 4.83857 4.94660 4.98145 5.18181 5.25189 5.33255 5.49865 5.52012 5.63778 5.66873 5.73595 5.89514 5.94518 5.96097 5.99625 6.09646 6.19789 6.22515 6.38694 6.68730 6.83913 6.98042 7.03965 7.09468 7.38971 7.52018 7.55440 7.70827 7.92776 8.21351 8.37514 8.87052 9.13370 9.50890 10.99990 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.020621 B = 0.003498 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.499219 B = 8003.130909 C = 9052.467160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.226 3.774 3 H 0.058 0.942 4 C -0.514 4.514 5 H 0.064 0.936 6 C 0.064 3.936 7 N -0.884 5.884 8 Si 0.900 3.100 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.443 5.443 13 C 0.032 3.968 14 C 0.408 3.592 15 N -0.310 5.310 16 N -0.246 5.246 17 C 0.174 3.826 18 C 0.174 3.826 19 C 0.090 3.910 20 N -0.433 5.433 21 C 0.041 3.959 22 C 0.054 3.946 23 N -0.423 5.423 24 N -0.448 5.448 25 C 0.070 3.930 26 H 0.126 0.874 27 C -0.163 4.163 28 C -0.106 4.106 29 H 0.101 0.899 30 C -0.114 4.114 31 H 0.025 0.975 32 H 0.093 0.907 33 H 0.029 0.971 34 H 0.263 0.737 35 H 0.053 0.947 36 H 0.095 0.905 37 H 0.035 0.965 38 H 0.182 0.818 39 H 0.170 0.830 40 H 0.171 0.829 41 H 0.108 0.892 42 H 0.109 0.891 43 H 0.067 0.933 44 H 0.059 0.941 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.591 -6.654 -21.158 22.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.122 3.878 3 H 0.076 0.924 4 C -0.552 4.552 5 H 0.082 0.918 6 C -0.139 4.139 7 N -0.522 5.522 8 Si 0.728 3.272 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.166 5.166 13 C -0.115 4.115 14 C 0.053 3.947 15 N -0.158 5.158 16 N -0.090 5.090 17 C -0.089 4.089 18 C 0.033 3.967 19 C -0.073 4.073 20 N -0.147 5.147 21 C -0.119 4.119 22 C -0.107 4.107 23 N -0.140 5.140 24 N -0.144 5.144 25 C -0.034 4.034 26 H 0.144 0.856 27 C -0.201 4.201 28 C -0.125 4.125 29 H 0.119 0.881 30 C -0.171 4.171 31 H 0.044 0.956 32 H 0.112 0.888 33 H 0.048 0.952 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.114 0.886 37 H 0.054 0.946 38 H 0.199 0.801 39 H 0.187 0.813 40 H 0.188 0.812 41 H 0.126 0.874 42 H 0.127 0.873 43 H 0.086 0.914 44 H 0.078 0.922 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.319 -5.394 -20.420 21.557 hybrid contribution 0.227 -1.526 0.475 1.614 sum 4.546 -6.920 -19.945 21.596 Atomic orbital electron populations 1.22370 0.99037 0.99117 1.02300 1.19458 0.91216 0.94945 0.82207 0.92431 1.20991 1.31846 1.13054 0.89348 0.91781 1.24888 0.94983 0.95059 0.98934 1.69910 1.36048 1.22514 1.23716 0.86469 0.78576 0.79825 0.82335 1.20610 1.21226 1.19916 1.59138 1.54906 1.03288 0.99226 1.22437 0.97309 0.88671 1.03099 1.23358 0.93857 0.93677 0.83770 1.75025 1.19896 1.10491 1.10355 1.74278 1.15700 1.22254 0.96805 1.21556 1.07551 0.88946 0.90882 1.19113 0.95812 0.92419 0.89354 1.23777 0.95950 0.97242 0.90306 1.68541 1.11829 1.26701 1.07603 1.23832 0.95077 0.91035 1.01942 1.23700 0.97884 0.98574 0.90515 1.68620 1.11448 1.25967 1.07961 1.45559 1.46342 1.16629 1.05830 1.21836 0.88909 0.86330 1.06347 0.85627 1.23668 0.96414 1.03409 0.96623 1.22435 0.97065 1.00894 0.92077 0.88075 1.21319 1.01712 0.96665 0.97391 0.95608 0.88831 0.95245 0.92700 0.92834 0.88625 0.94631 0.80137 0.81332 0.81173 0.87387 0.87283 0.91365 0.92219 0.92686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.20 8.17 37.16 0.30 -3.89 16 2 C 0.23 5.68 2.00 -68.86 -0.14 5.54 16 3 H 0.06 1.66 7.75 -51.93 -0.40 1.26 16 4 C -0.51 -13.54 7.91 -34.44 -0.27 -13.82 16 5 H 0.06 1.65 7.12 -52.48 -0.37 1.27 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.88 -24.93 11.32 55.43 0.63 -24.30 16 8 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 9 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 12 N -0.44 -9.44 4.76 -176.13 -0.84 -10.28 16 13 C 0.03 0.58 8.50 60.07 0.51 1.09 16 14 C 0.41 8.46 6.67 -319.11 -2.13 6.33 16 15 N -0.31 -7.04 9.60 30.28 0.29 -6.75 16 16 N -0.25 -4.97 11.88 32.58 0.39 -4.58 16 17 C 0.17 3.01 7.76 -153.74 -1.19 1.82 16 18 C 0.17 2.40 6.74 -82.85 -0.56 1.84 16 19 C 0.09 1.13 10.89 -16.95 -0.18 0.95 16 20 N -0.43 -4.88 10.49 -12.72 -0.13 -5.02 16 21 C 0.04 0.33 11.21 -17.30 -0.19 0.14 16 22 C 0.05 0.43 10.92 -17.41 -0.19 0.24 16 23 N -0.42 -4.75 5.85 -9.67 -0.06 -4.81 16 24 N -0.45 -7.71 3.10 -107.66 -0.33 -8.04 16 25 C 0.07 0.93 3.67 -67.93 -0.25 0.68 16 26 H 0.13 1.53 7.90 -51.93 -0.41 1.12 16 27 C -0.16 -1.99 9.62 -26.70 -0.26 -2.24 16 28 C -0.11 -1.16 4.12 -90.58 -0.37 -1.53 16 29 H 0.10 1.30 7.78 -51.93 -0.40 0.89 16 30 C -0.11 -0.88 9.94 37.16 0.37 -0.51 16 31 H 0.02 0.59 6.42 -51.93 -0.33 0.26 16 32 H 0.09 2.55 6.07 -51.93 -0.32 2.24 16 33 H 0.03 0.71 6.33 -51.93 -0.33 0.38 16 34 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 35 H 0.05 0.81 5.40 -51.93 -0.28 0.53 16 36 H 0.10 1.78 6.76 -51.93 -0.35 1.43 16 37 H 0.04 0.66 6.46 -51.93 -0.34 0.33 16 38 H 0.18 2.24 7.87 -52.49 -0.41 1.82 16 39 H 0.17 0.75 8.06 -52.48 -0.42 0.32 16 40 H 0.17 0.70 7.98 -52.49 -0.42 0.28 16 41 H 0.11 1.60 8.14 -51.93 -0.42 1.18 16 42 H 0.11 1.09 8.05 -51.93 -0.42 0.67 16 43 H 0.07 0.50 7.01 -51.93 -0.36 0.14 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.05 0.39 7.90 -51.93 -0.41 -0.02 16 LS Contribution 360.73 15.07 5.44 5.44 Total: -1.00 -31.31 360.73 -10.25 -41.56 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -5.96 Total: 2.81 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: -4.65 Total: -1.74 kcal Atomic # 7 Polarization: -63.72 SS G_CDS: -0.06 Total: -63.78 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.31 -10.25 -41.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417482498.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 226.776 kcal (2) G-P(sol) polarization free energy of solvation -31.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 195.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 185.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds