Wall clock time and date at job start Tue Mar 31 2020 15:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47529 * 2 1 4 4 C 1.50701 * 109.46984 * 239.99459 * 2 1 3 5 5 H 1.07993 * 120.00381 * 245.29580 * 4 2 1 6 6 C 1.37879 * 119.99650 * 65.29931 * 4 2 1 7 7 N 1.31515 * 119.99961 * 5.48728 * 6 4 2 8 8 Si 1.86801 * 119.99709 * 185.48751 * 6 4 2 9 9 H 1.48506 * 109.46909 * 95.00025 * 8 6 4 10 10 H 1.48504 * 109.46777 * 214.99487 * 8 6 4 11 11 H 1.48493 * 109.47463 * 334.99601 * 8 6 4 12 12 N 1.46904 * 109.46694 * 119.99984 * 2 1 3 13 13 C 1.46898 * 111.00126 * 58.95042 * 12 2 1 14 14 C 1.38285 * 111.00087 * 294.99394 * 12 2 1 15 15 N 1.31500 * 126.36307 * 359.96542 * 14 12 2 16 16 N 1.28509 * 110.06459 * 180.02562 * 15 14 12 17 17 C 1.31298 * 109.91849 * 359.72320 * 16 15 14 18 18 C 1.47746 * 126.47418 * 180.27822 * 17 16 15 19 19 C 1.39750 * 120.13498 * 5.19672 * 18 17 16 20 20 N 1.31907 * 119.84071 * 180.02562 * 19 18 17 21 21 C 1.32275 * 120.11941 * 359.97438 * 20 19 18 22 22 C 1.38392 * 120.27556 * 359.97438 * 21 20 19 23 23 N 1.32039 * 120.15451 * 359.76813 * 22 21 20 24 24 N 1.36354 * 126.36672 * 180.02562 * 14 12 2 25 25 C 1.46501 * 127.15236 * 359.96765 * 24 14 12 26 26 H 1.09001 * 115.54805 * 250.76090 * 25 24 14 27 27 C 1.53002 * 117.49918 * 36.42816 * 25 24 14 28 28 C 1.53003 * 117.51810 * 105.05822 * 25 24 14 29 29 H 1.08997 * 117.49879 * 145.02779 * 28 25 24 30 30 C 1.52998 * 117.49746 * 0.02562 * 28 25 24 31 31 H 1.09004 * 109.47253 * 54.59695 * 1 2 3 32 32 H 1.09002 * 109.47468 * 174.60142 * 1 2 3 33 33 H 1.09007 * 109.47230 * 294.60314 * 1 2 3 34 34 H 0.97004 * 119.99484 * 179.97438 * 7 6 4 35 35 H 1.08993 * 109.47340 * 296.04232 * 13 12 2 36 36 H 1.09002 * 109.46964 * 56.05069 * 13 12 2 37 37 H 1.09003 * 109.47180 * 176.03942 * 13 12 2 38 38 H 1.08000 * 120.08084 * 0.02562 * 19 18 17 39 39 H 1.08001 * 119.86206 * 180.02562 * 21 20 19 40 40 H 1.08001 * 119.92392 * 180.02562 * 22 21 20 41 41 H 1.08998 * 117.50146 * 215.00089 * 27 25 24 42 42 H 1.09001 * 117.49574 * 0.02658 * 27 25 24 43 43 H 1.09000 * 109.47345 * 59.99628 * 30 28 25 44 44 H 1.08994 * 109.47518 * 179.97438 * 30 28 25 45 45 H 1.09004 * 109.47284 * 300.00035 * 30 28 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5808 -1.6357 -1.1336 6 6 1.7916 -0.1793 -2.4798 7 7 1.2195 0.9994 -2.5940 8 14 2.2781 -1.1337 -4.0101 9 1 1.1100 -1.9067 -4.5035 10 1 2.7253 -0.1865 -5.0628 11 1 3.3856 -2.0664 -3.6805 12 7 2.0196 -0.6925 1.1995 13 6 1.5281 -2.0761 1.2461 14 6 1.6705 -0.0037 2.3466 15 7 0.9935 1.1222 2.4044 16 7 0.8461 1.4857 3.6282 17 6 1.4144 0.6114 4.4260 18 6 1.4584 0.6677 5.9018 19 6 0.7640 1.6687 6.5867 20 7 0.8076 1.7138 7.9043 21 6 1.5063 0.8139 8.5764 22 6 2.1949 -0.1800 7.9032 23 7 2.1545 -0.2384 6.5847 24 7 1.9651 -0.3651 3.6280 25 6 2.7077 -1.5501 4.0645 26 1 2.1158 -2.3194 4.5606 27 6 3.8778 -2.0113 3.1932 28 6 4.1460 -1.3459 4.5447 29 1 4.5004 -1.9808 5.3567 30 6 4.6988 0.0806 4.5328 31 1 -0.3634 0.5954 -0.8377 32 1 -0.3634 -1.0231 -0.0967 33 1 -0.3634 0.4279 0.9344 34 1 1.0505 1.3733 -3.4730 35 1 0.4418 -2.0730 1.3349 36 1 1.8166 -2.5951 0.3320 37 1 1.9616 -2.5869 2.1059 38 1 0.1931 2.4035 6.0385 39 1 1.5388 0.8545 9.6552 40 1 2.7632 -0.9121 8.4578 41 1 4.0558 -3.0839 3.1162 42 1 4.0953 -1.4327 2.2955 43 1 4.0876 0.7126 5.1771 44 1 5.7257 0.0754 4.8981 45 1 4.6769 0.4704 3.5151 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001417482502.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:31:54 Heat of formation + Delta-G solvation = 185.144578 kcal Electronic energy + Delta-G solvation = -28968.038263 eV Core-core repulsion = 25217.391944 eV Total energy + Delta-G solvation = -3750.646319 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.171 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.65620 -41.01892 -38.09131 -37.35687 -34.56290 -33.05478 -32.80645 -32.10111 -29.26289 -28.85920 -28.51408 -25.94868 -25.21297 -24.73155 -24.41293 -23.34184 -21.80075 -21.09690 -20.19225 -19.25231 -17.52246 -17.32207 -16.92615 -16.54869 -16.37074 -15.76173 -15.46184 -15.11277 -14.76578 -14.48009 -14.31472 -13.88584 -13.29392 -13.16799 -13.04935 -12.82095 -12.44223 -12.38381 -11.83276 -11.65070 -11.60088 -11.48249 -11.46413 -11.26012 -10.97532 -10.95722 -10.75664 -10.65719 -10.42801 -10.23349 -10.10612 -10.04748 -9.79417 -9.51719 -9.29093 -8.97480 -8.84812 -8.43672 -7.40439 -6.09009 -4.13798 0.30379 0.86931 2.21333 2.44637 3.14922 3.26647 3.34141 3.35984 3.52389 3.52566 3.68847 4.03427 4.19873 4.27456 4.44873 4.50419 4.57265 4.62651 4.89039 4.96546 4.98508 5.24996 5.26267 5.34380 5.50857 5.55718 5.68676 5.74208 5.77971 5.91122 5.96269 5.98480 6.10250 6.12608 6.22904 6.29650 6.40132 6.68740 6.82091 6.97438 7.04520 7.06424 7.36777 7.52017 7.53408 7.70183 7.90682 8.10995 8.37165 8.86703 9.13831 9.50048 10.99889 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.022044 B = 0.003545 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.907509 B = 7896.461697 C = 8671.335107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.226 3.774 3 H 0.061 0.939 4 C -0.517 4.517 5 H 0.065 0.935 6 C 0.066 3.934 7 N -0.882 5.882 8 Si 0.897 3.103 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.273 1.273 12 N -0.444 5.444 13 C 0.027 3.973 14 C 0.406 3.594 15 N -0.308 5.308 16 N -0.248 5.248 17 C 0.177 3.823 18 C 0.175 3.825 19 C 0.088 3.912 20 N -0.433 5.433 21 C 0.041 3.959 22 C 0.056 3.944 23 N -0.426 5.426 24 N -0.443 5.443 25 C 0.072 3.928 26 H 0.128 0.872 27 C -0.165 4.165 28 C -0.123 4.123 29 H 0.113 0.887 30 C -0.118 4.118 31 H 0.076 0.924 32 H 0.026 0.974 33 H 0.037 0.963 34 H 0.263 0.737 35 H 0.033 0.967 36 H 0.096 0.904 37 H 0.057 0.943 38 H 0.182 0.818 39 H 0.170 0.830 40 H 0.172 0.828 41 H 0.108 0.892 42 H 0.123 0.877 43 H 0.055 0.945 44 H 0.060 0.940 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.008 -6.416 20.355 21.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.122 3.878 3 H 0.079 0.921 4 C -0.556 4.556 5 H 0.083 0.917 6 C -0.137 4.137 7 N -0.519 5.519 8 Si 0.725 3.275 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.198 1.198 12 N -0.167 5.167 13 C -0.120 4.120 14 C 0.051 3.949 15 N -0.156 5.156 16 N -0.092 5.092 17 C -0.086 4.086 18 C 0.034 3.966 19 C -0.074 4.074 20 N -0.147 5.147 21 C -0.119 4.119 22 C -0.105 4.105 23 N -0.142 5.142 24 N -0.138 5.138 25 C -0.032 4.032 26 H 0.145 0.855 27 C -0.202 4.202 28 C -0.142 4.142 29 H 0.131 0.869 30 C -0.175 4.175 31 H 0.095 0.905 32 H 0.045 0.955 33 H 0.056 0.944 34 H 0.073 0.927 35 H 0.052 0.948 36 H 0.115 0.885 37 H 0.076 0.924 38 H 0.199 0.801 39 H 0.187 0.813 40 H 0.189 0.811 41 H 0.126 0.874 42 H 0.141 0.859 43 H 0.074 0.926 44 H 0.079 0.921 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.718 -5.126 19.646 20.641 hybrid contribution 0.207 -1.656 -0.428 1.723 sum 3.925 -6.782 19.217 20.753 Atomic orbital electron populations 1.22352 0.99301 0.99426 1.01332 1.19448 0.90939 0.95253 0.82202 0.92068 1.20992 1.36357 1.08696 0.89518 0.91721 1.24891 0.95130 0.94747 0.98933 1.69974 1.42315 1.15700 1.23945 0.86501 0.78649 0.79707 0.82647 1.20729 1.21182 1.19807 1.59219 1.54915 1.03304 0.99212 1.22536 0.98238 0.87768 1.03457 1.23354 0.93499 0.94083 0.83945 1.75030 1.18157 1.12371 1.10014 1.74289 1.16995 1.21142 0.96794 1.21523 1.05349 0.91163 0.90602 1.19102 0.94977 0.93184 0.89313 1.23783 0.96325 0.97106 0.90201 1.68538 1.15194 1.23071 1.07861 1.23831 0.94185 0.91914 1.02003 1.23699 0.97965 0.98504 0.90330 1.68495 1.14601 1.22785 1.08334 1.45449 1.42902 1.20104 1.05336 1.21790 0.88095 0.88013 1.05348 0.85496 1.23759 0.98107 1.02181 0.96166 1.22594 0.94999 0.98668 0.97962 0.86897 1.21263 1.00140 0.93920 1.02215 0.90492 0.95535 0.94375 0.92714 0.94823 0.88537 0.92390 0.80141 0.81313 0.81142 0.87365 0.85860 0.92622 0.92127 0.92437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.03 8.13 37.16 0.30 -3.73 16 2 C 0.23 5.60 1.90 -68.86 -0.13 5.47 16 3 H 0.06 1.76 7.92 -51.93 -0.41 1.35 16 4 C -0.52 -13.45 7.94 -34.44 -0.27 -13.73 16 5 H 0.06 1.63 6.57 -52.49 -0.34 1.28 16 6 C 0.07 1.77 5.28 -17.82 -0.09 1.68 16 7 N -0.88 -24.92 12.00 55.43 0.67 -24.26 16 8 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 9 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 10 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 12 N -0.44 -9.23 3.59 -176.13 -0.63 -9.86 16 13 C 0.03 0.48 8.21 60.06 0.49 0.97 16 14 C 0.41 8.22 6.47 -319.09 -2.07 6.16 16 15 N -0.31 -6.88 9.32 30.28 0.28 -6.59 16 16 N -0.25 -4.94 11.89 32.58 0.39 -4.55 16 17 C 0.18 3.01 7.23 -153.74 -1.11 1.90 16 18 C 0.18 2.41 6.18 -82.86 -0.51 1.90 16 19 C 0.09 1.12 10.89 -16.95 -0.18 0.93 16 20 N -0.43 -4.91 10.49 -12.72 -0.13 -5.04 16 21 C 0.04 0.33 11.21 -17.30 -0.19 0.14 16 22 C 0.06 0.46 11.22 -17.41 -0.20 0.26 16 23 N -0.43 -4.88 7.79 -9.67 -0.08 -4.95 16 24 N -0.44 -7.42 2.55 -107.65 -0.27 -7.70 16 25 C 0.07 0.94 4.06 -67.93 -0.28 0.67 16 26 H 0.13 1.50 8.14 -51.93 -0.42 1.07 16 27 C -0.16 -2.00 7.50 -26.73 -0.20 -2.20 16 28 C -0.12 -1.38 5.71 -90.62 -0.52 -1.90 16 29 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 30 C -0.12 -1.51 9.51 37.16 0.35 -1.15 16 31 H 0.08 2.06 6.86 -51.93 -0.36 1.71 16 32 H 0.03 0.61 6.78 -51.93 -0.35 0.25 16 33 H 0.04 0.91 5.79 -51.92 -0.30 0.61 16 34 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 35 H 0.03 0.62 6.63 -51.93 -0.34 0.27 16 36 H 0.10 1.75 6.32 -51.93 -0.33 1.43 16 37 H 0.06 0.85 4.69 -51.93 -0.24 0.61 16 38 H 0.18 2.23 7.88 -52.49 -0.41 1.82 16 39 H 0.17 0.76 8.06 -52.49 -0.42 0.34 16 40 H 0.17 0.75 8.06 -52.49 -0.42 0.32 16 41 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.12 1.88 7.00 -51.93 -0.36 1.52 16 43 H 0.05 0.77 6.44 -51.93 -0.33 0.44 16 44 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.06 0.88 7.90 -51.93 -0.41 0.47 16 LS Contribution 357.70 15.07 5.39 5.39 Total: -1.00 -31.00 357.70 -9.89 -40.89 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -5.87 Total: 3.74 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: -4.61 Total: -2.64 kcal Atomic # 7 Polarization: -63.17 SS G_CDS: 0.22 Total: -62.95 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.00 -9.89 -40.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417482502.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 226.034 kcal (2) G-P(sol) polarization free energy of solvation -30.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 195.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 185.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds