Wall clock time and date at job start Tue Mar 31 2020 15:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46495 * 109.47000 * 2 1 4 4 C 1.46505 * 120.00299 * 269.99943 * 3 2 1 5 5 C 1.50697 * 109.47117 * 270.00242 * 4 3 2 6 6 H 1.07995 * 120.00068 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00020 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00122 * 180.02562 * 7 5 4 9 9 Si 1.86807 * 119.99848 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.46810 * 89.99411 * 9 7 5 11 11 H 1.48498 * 109.47172 * 209.99580 * 9 7 5 12 12 H 1.48496 * 109.46968 * 329.99886 * 9 7 5 13 13 C 1.34779 * 119.99954 * 90.00331 * 3 2 1 14 14 O 1.21279 * 120.00062 * 179.97438 * 13 3 2 15 15 C 1.50696 * 119.99705 * 359.97438 * 13 3 2 16 16 N 1.46898 * 109.47049 * 179.97438 * 15 13 3 17 17 C 1.46898 * 111.00367 * 185.85434 * 16 15 13 18 18 C 1.50699 * 109.54093 * 61.20255 * 17 16 15 19 19 O 1.20823 * 120.00224 * 215.65025 * 18 17 16 20 20 O 1.34234 * 120.00093 * 35.38050 * 18 17 16 21 21 C 1.45194 * 117.00196 * 180.27379 * 20 18 17 22 22 C 1.53182 * 109.54401 * 181.37901 * 17 16 15 23 23 C 1.53105 * 109.15695 * 63.06899 * 22 17 16 24 24 O 1.42903 * 109.48959 * 57.47269 * 23 22 17 25 25 C 1.42904 * 114.09505 * 298.89303 * 24 23 22 26 26 C 1.53093 * 109.42142 * 61.15617 * 25 24 23 27 27 H 1.08998 * 109.47443 * 59.99646 * 1 2 3 28 28 H 1.08999 * 109.47274 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47162 * 299.99415 * 1 2 3 30 30 H 1.09008 * 109.46827 * 239.99971 * 2 1 3 31 31 H 1.08995 * 109.47046 * 120.00671 * 2 1 3 32 32 H 1.09000 * 109.46532 * 30.00077 * 4 3 2 33 33 H 1.08996 * 109.47125 * 150.00162 * 4 3 2 34 34 H 0.97000 * 119.99833 * 180.02562 * 8 7 5 35 35 H 1.09005 * 109.47476 * 60.00241 * 15 13 3 36 36 H 1.08996 * 109.47765 * 299.99602 * 15 13 3 37 37 H 1.00900 * 111.00691 * 309.81289 * 16 15 13 38 38 H 1.08999 * 109.46993 * 300.00199 * 21 20 18 39 39 H 1.09002 * 109.46910 * 59.99972 * 21 20 18 40 40 H 1.08998 * 109.47328 * 179.97438 * 21 20 18 41 41 H 1.09003 * 109.52045 * 182.88133 * 22 17 16 42 42 H 1.08993 * 109.52565 * 303.06628 * 22 17 16 43 43 H 1.08997 * 109.40429 * 297.48854 * 23 22 17 44 44 H 1.08998 * 109.48904 * 177.50859 * 23 22 17 45 45 H 1.09005 * 109.47779 * 301.16864 * 25 24 23 46 46 H 1.09001 * 109.49071 * 181.14652 * 25 24 23 47 47 H 1.08996 * 109.52412 * 182.48468 * 26 25 24 48 48 H 1.08999 * 109.51836 * 62.29665 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3426 1.2303 -1.0962 7 6 4.1491 2.3897 -2.8779 8 7 5.3910 2.1827 -3.2579 9 14 3.0127 3.4353 -3.9292 10 1 3.1162 4.8555 -3.5079 11 1 3.4056 3.3123 -5.3559 12 1 1.6130 2.9694 -3.7592 13 6 2.2430 2.0165 1.1672 14 8 2.6477 3.1598 1.1672 15 6 1.9913 1.3062 2.4722 16 7 2.3102 2.2059 3.5888 17 6 2.2101 1.5042 4.8755 18 6 3.1978 0.3666 4.9075 19 8 2.9132 -0.6651 5.4682 20 8 4.3919 0.4974 4.3084 21 6 5.2906 -0.6411 4.3740 22 6 2.5150 2.4799 6.0164 23 6 1.4587 3.5881 6.0256 24 8 0.1599 3.0076 6.1605 25 6 -0.1976 2.1238 5.0961 26 6 0.7907 0.9555 5.0508 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.8933 -0.5139 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 1.5817 1.6877 -2.0283 33 1 2.0955 3.1410 -1.1384 34 1 5.7170 2.5732 -4.0837 35 1 2.6212 0.4185 2.5302 36 1 0.9433 1.0125 2.5299 37 1 3.2239 2.6178 3.4718 38 1 5.5097 -0.8714 5.4166 39 1 4.8194 -1.5036 3.9026 40 1 6.2172 -0.4032 3.8515 41 1 2.4908 1.9475 6.9672 42 1 3.5023 2.9170 5.8677 43 1 1.5119 4.1469 5.0912 44 1 1.6449 4.2610 6.8626 45 1 -0.1662 2.6634 4.1495 46 1 -1.2047 1.7416 5.2633 47 1 0.5460 0.3036 4.2122 48 1 0.7306 0.3914 5.9815 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001460109051.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:53 Heat of formation + Delta-G solvation = -154.531015 kcal Electronic energy + Delta-G solvation = -30462.507342 eV Core-core repulsion = 26325.237162 eV Total energy + Delta-G solvation = -4137.270180 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.35338 -39.44418 -39.00501 -36.71458 -36.06985 -35.34757 -32.81302 -31.94870 -31.25254 -30.37614 -28.50336 -28.05695 -26.31669 -24.98337 -23.90653 -23.03698 -22.06020 -21.88136 -19.54237 -18.57806 -18.00097 -17.33028 -17.03797 -16.88335 -16.47777 -16.04326 -15.92735 -15.72258 -15.16896 -15.02389 -14.56941 -14.38011 -13.91533 -13.72109 -13.53702 -13.37969 -13.17403 -12.98213 -12.72277 -12.51469 -12.46052 -12.35372 -12.18670 -12.06837 -11.77521 -11.57573 -11.42892 -11.20230 -11.00339 -10.98274 -10.87794 -10.78665 -10.52497 -10.41220 -10.18389 -9.78864 -9.57475 -9.11823 -8.67649 -8.61335 -7.77435 -6.11457 -4.10323 1.90078 2.41434 3.26386 3.27277 3.32971 3.35283 3.46659 3.77383 4.09963 4.21711 4.35087 4.37407 4.53475 4.77076 4.88805 4.94705 5.02087 5.08425 5.12652 5.18921 5.22816 5.25874 5.27260 5.34885 5.40123 5.41506 5.48493 5.50711 5.54748 5.66870 5.76270 5.79666 5.90620 5.96397 6.09489 6.16079 6.33662 6.46310 6.70414 6.92198 7.07120 7.12450 7.29806 7.48349 7.58218 8.19157 8.43704 8.88148 8.93709 9.48917 11.01902 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.014139 B = 0.003736 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.812133 B = 7492.598655 C = 8028.637156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.105 3.895 3 N -0.592 5.592 4 C 0.218 3.782 5 C -0.529 4.529 6 H 0.073 0.927 7 C 0.073 3.927 8 N -0.898 5.898 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.511 3.489 14 O -0.526 6.526 15 C 0.035 3.965 16 N -0.646 5.646 17 C 0.131 3.869 18 C 0.433 3.567 19 O -0.505 6.505 20 O -0.355 6.355 21 C 0.035 3.965 22 C -0.140 4.140 23 C 0.070 3.930 24 O -0.383 6.383 25 C 0.070 3.930 26 C -0.136 4.136 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.051 0.949 30 H 0.086 0.914 31 H 0.063 0.937 32 H 0.030 0.970 33 H 0.037 0.963 34 H 0.265 0.735 35 H 0.056 0.944 36 H 0.100 0.900 37 H 0.368 0.632 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.105 0.895 41 H 0.082 0.918 42 H 0.086 0.914 43 H 0.073 0.927 44 H 0.095 0.905 45 H 0.069 0.931 46 H 0.094 0.906 47 H 0.080 0.920 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.555 -4.627 17.528 20.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.019 4.019 3 N -0.324 5.324 4 C 0.097 3.903 5 C -0.567 4.567 6 H 0.091 0.909 7 C -0.129 4.129 8 N -0.536 5.536 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.297 3.703 14 O -0.402 6.402 15 C -0.097 4.097 16 N -0.281 5.281 17 C 0.037 3.963 18 C 0.273 3.727 19 O -0.391 6.391 20 O -0.271 6.271 21 C -0.058 4.058 22 C -0.178 4.178 23 C -0.007 4.007 24 O -0.302 6.302 25 C -0.007 4.007 26 C -0.174 4.174 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.070 0.930 30 H 0.104 0.896 31 H 0.082 0.918 32 H 0.048 0.952 33 H 0.055 0.945 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.118 0.882 37 H 0.191 0.809 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.123 0.877 41 H 0.100 0.900 42 H 0.105 0.895 43 H 0.091 0.909 44 H 0.113 0.887 45 H 0.087 0.913 46 H 0.112 0.888 47 H 0.098 0.902 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.991 -3.998 17.695 20.247 hybrid contribution 0.868 -0.666 -0.970 1.462 sum -8.123 -4.664 16.725 19.169 Atomic orbital electron populations 1.22237 0.96595 1.01661 1.02347 1.21448 0.93539 0.83901 1.03002 1.47908 1.64249 1.13298 1.06964 1.19649 0.97299 0.93410 0.79931 1.21310 0.95325 1.32937 1.07135 0.90866 1.24850 0.94988 0.95780 0.97332 1.69894 1.15162 1.44976 1.23575 0.86850 0.81447 0.81637 0.79748 1.19865 1.21098 1.19080 1.19985 0.78690 0.86983 0.84665 1.90682 1.44996 1.17697 1.86819 1.22041 1.02558 0.94745 0.90391 1.60366 1.38256 1.31092 0.98387 1.21183 0.92753 0.89255 0.93086 1.25314 0.82225 0.90153 0.75045 1.90637 1.77289 1.30226 1.40997 1.86565 1.26721 1.43709 1.70092 1.23312 0.92527 0.87379 1.02625 1.22246 1.01643 0.97462 0.96451 1.22492 0.81403 0.93647 1.03114 1.87892 1.33392 1.62095 1.46786 1.22504 0.96961 0.89602 0.91631 1.22234 0.91647 0.99290 1.04214 0.92031 0.91931 0.92952 0.89593 0.91827 0.95247 0.94495 0.92559 0.92655 0.88214 0.80910 0.91956 0.91825 0.87656 0.89969 0.89517 0.90889 0.88733 0.91275 0.88799 0.90182 0.89340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.05 10.24 37.16 0.38 -1.67 16 2 C 0.11 1.58 5.93 -4.04 -0.02 1.56 16 3 N -0.59 -11.67 2.46 -175.06 -0.43 -12.10 16 4 C 0.22 5.19 4.23 -5.19 -0.02 5.16 16 5 C -0.53 -14.89 9.94 -34.44 -0.34 -15.23 16 6 H 0.07 2.27 8.06 -52.49 -0.42 1.84 16 7 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 8 N -0.90 -27.34 13.96 55.43 0.77 -26.57 16 9 Si 0.88 21.31 27.47 -169.99 -4.67 16.64 16 10 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.27 -6.08 6.54 56.52 0.37 -5.71 16 13 C 0.51 9.90 7.70 -10.99 -0.08 9.81 16 14 O -0.53 -12.28 15.65 5.56 0.09 -12.19 16 15 C 0.03 0.49 3.93 -4.98 -0.02 0.47 16 16 N -0.65 -8.51 4.51 -102.21 -0.46 -8.97 16 17 C 0.13 1.49 0.53 -132.57 -0.07 1.42 16 18 C 0.43 5.61 5.45 36.01 0.20 5.81 16 19 O -0.51 -7.40 15.78 -18.75 -0.30 -7.70 16 20 O -0.35 -4.64 9.54 -39.27 -0.37 -5.01 16 21 C 0.04 0.37 10.56 101.05 1.07 1.44 16 22 C -0.14 -1.37 5.06 -26.58 -0.13 -1.50 16 23 C 0.07 0.68 6.68 37.21 0.25 0.93 16 24 O -0.38 -4.29 10.77 -35.23 -0.38 -4.67 16 25 C 0.07 0.70 6.68 37.21 0.25 0.95 16 26 C -0.14 -1.41 4.20 -26.59 -0.11 -1.53 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.59 7.22 -51.93 -0.37 0.21 16 30 H 0.09 1.36 8.07 -51.92 -0.42 0.94 16 31 H 0.06 0.83 6.44 -51.93 -0.33 0.50 16 32 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16 33 H 0.04 0.95 6.85 -51.93 -0.36 0.59 16 34 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 35 H 0.06 0.79 5.88 -51.93 -0.31 0.49 16 36 H 0.10 1.21 5.60 -51.93 -0.29 0.92 16 37 H 0.37 5.38 7.83 -39.29 -0.31 5.07 16 38 H 0.06 0.59 8.13 -51.93 -0.42 0.16 16 39 H 0.06 0.67 8.13 -51.93 -0.42 0.24 16 40 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.07 0.79 7.75 -51.93 -0.40 0.38 16 44 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.07 0.76 7.75 -51.93 -0.40 0.36 16 46 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.08 0.80 6.37 -51.93 -0.33 0.47 16 48 H 0.09 0.95 7.77 -51.93 -0.40 0.54 16 LS Contribution 381.75 15.07 5.75 5.75 Total: -1.00 -34.50 381.75 -6.45 -40.95 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -7.69 Total: 4.24 kcal Atomic # 6 Polarization: 8.39 SS G_CDS: 1.23 Total: 9.63 kcal Atomic # 7 Polarization: -47.52 SS G_CDS: -0.12 Total: -47.64 kcal Atomic # 8 Polarization: -28.61 SS G_CDS: -0.96 Total: -29.57 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.67 Total: 16.64 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.50 -6.45 -40.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460109051.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.579 kcal (2) G-P(sol) polarization free energy of solvation -34.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds