Wall clock time and date at job start Tue Mar 31 2020 15:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34234 * 117.00130 * 2 1 4 4 O 1.20827 * 119.99882 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99756 * 180.27068 * 3 2 1 6 6 N 1.46902 * 109.53963 * 35.36855 * 5 3 2 7 7 C 1.46898 * 111.00697 * 60.92498 * 6 5 3 8 8 C 1.52998 * 109.47176 * 185.87107 * 7 6 5 9 9 C 1.50697 * 109.46983 * 180.02562 * 8 7 6 10 10 O 1.21281 * 120.00245 * 359.97438 * 9 8 7 11 11 N 1.34782 * 119.99887 * 180.02562 * 9 8 7 12 12 C 1.46490 * 120.00079 * 359.97438 * 11 9 8 13 13 C 1.46501 * 119.99514 * 179.97438 * 11 9 8 14 14 C 1.50703 * 109.47175 * 90.00127 * 13 11 9 15 15 H 1.07996 * 119.99791 * 359.97438 * 14 13 11 16 16 C 1.37874 * 119.99770 * 179.97438 * 14 13 11 17 17 N 1.31515 * 120.00077 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99882 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46972 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47267 * 120.00198 * 18 16 14 21 21 H 1.48499 * 109.47481 * 240.00270 * 18 16 14 22 22 C 1.53171 * 109.54450 * 275.18666 * 5 3 2 23 23 C 1.53109 * 109.15482 * 183.24325 * 22 5 3 24 24 O 1.42899 * 109.48485 * 57.47701 * 23 22 5 25 25 C 1.42910 * 114.09895 * 298.88470 * 24 23 22 26 26 C 1.53088 * 109.41409 * 61.15808 * 25 24 23 27 27 H 1.08998 * 109.47318 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47340 * 300.00504 * 1 2 3 29 29 H 1.09008 * 109.46866 * 60.00237 * 1 2 3 30 30 H 1.00905 * 110.99501 * 296.96218 * 6 5 3 31 31 H 1.09005 * 109.46690 * 305.87075 * 7 6 5 32 32 H 1.08996 * 109.46607 * 65.86523 * 7 6 5 33 33 H 1.09007 * 109.46773 * 299.99678 * 8 7 6 34 34 H 1.09000 * 109.47301 * 59.99679 * 8 7 6 35 35 H 1.08996 * 109.47347 * 89.99706 * 12 11 9 36 36 H 1.08997 * 109.47500 * 210.00093 * 12 11 9 37 37 H 1.09007 * 109.47266 * 329.99767 * 12 11 9 38 38 H 1.09004 * 109.46325 * 209.99822 * 13 11 9 39 39 H 1.08993 * 109.47318 * 329.99526 * 13 11 9 40 40 H 0.97001 * 119.99956 * 180.02562 * 17 16 14 41 41 H 1.09004 * 109.52214 * 303.05775 * 22 5 3 42 42 H 1.08996 * 109.52664 * 63.24750 * 22 5 3 43 43 H 1.08996 * 109.40551 * 297.49312 * 23 22 5 44 44 H 1.08999 * 109.48890 * 177.50839 * 23 22 5 45 45 H 1.09001 * 109.47668 * 301.18082 * 25 24 23 46 46 H 1.08991 * 109.49419 * 181.15076 * 25 24 23 47 47 H 1.09001 * 109.52431 * 182.48659 * 26 25 24 48 48 H 1.09011 * 109.51876 * 62.29828 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2748 -0.0062 6 7 4.1126 0.1748 -0.8122 7 6 3.6499 0.2614 -2.2037 8 6 4.1172 -0.9750 -2.9744 9 6 3.6429 -0.8858 -4.4020 10 8 2.9946 0.0719 -4.7670 11 7 3.9384 -1.8711 -5.2730 12 6 4.7210 -3.0282 -4.8320 13 6 3.4769 -1.7846 -6.6607 14 6 4.5172 -1.0803 -7.4931 15 1 5.4305 -0.7316 -7.0343 16 6 4.3028 -0.8812 -8.8405 17 7 3.1903 -1.3055 -9.3991 18 14 5.5919 -0.0076 -9.8722 19 1 6.7429 0.3679 -9.0123 20 1 6.0571 -0.9127 -10.9536 21 1 5.0008 1.2160 -10.4709 22 6 4.0909 1.1682 1.4290 23 6 5.6134 1.3304 1.4207 24 8 5.9560 2.5834 0.8252 25 6 5.5325 2.7193 -0.5329 26 6 4.0068 2.6150 -0.6030 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 3.8791 -0.7199 -0.4083 31 1 2.5611 0.3110 -2.2220 32 1 4.0622 1.1568 -2.6686 33 1 5.2059 -1.0245 -2.9560 34 1 3.7048 -1.8704 -2.5093 35 1 4.0483 -3.8032 -4.4647 36 1 5.2994 -3.4166 -5.6703 37 1 5.3978 -2.7259 -4.0328 38 1 3.3162 -2.7888 -7.0533 39 1 2.5419 -1.2258 -6.6985 40 1 3.0397 -1.1657 -10.3471 41 1 3.6455 1.9541 2.0389 42 1 3.8293 0.1936 1.8410 43 1 6.0608 0.5200 0.8453 44 1 5.9879 1.2996 2.4439 45 1 5.9789 1.9269 -1.1338 46 1 5.8486 3.6889 -0.9172 47 1 3.6850 2.6742 -1.6427 48 1 3.5595 3.4311 -0.0352 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001473477134.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:58:51 Heat of formation + Delta-G solvation = -163.396764 kcal Electronic energy + Delta-G solvation = -29635.135753 eV Core-core repulsion = 25497.481125 eV Total energy + Delta-G solvation = -4137.654628 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.36103 -39.37156 -38.98808 -36.75733 -36.38725 -34.83753 -33.03227 -32.51449 -31.40052 -29.58015 -28.28244 -27.56575 -25.88420 -25.41588 -24.25534 -23.35728 -22.00487 -21.71310 -19.64842 -18.47817 -17.96881 -17.35574 -16.77167 -16.60476 -16.37857 -16.26631 -16.00990 -15.40471 -15.33126 -15.08283 -14.76533 -14.51384 -14.13487 -13.93159 -13.50569 -13.38990 -13.07609 -12.76945 -12.66484 -12.44307 -12.27269 -12.21361 -12.17001 -11.83218 -11.70271 -11.48409 -11.37468 -11.17930 -11.13685 -11.01917 -10.86786 -10.85678 -10.58880 -10.42024 -10.17224 -9.82639 -9.62459 -8.94426 -8.82016 -8.45349 -7.66550 -6.05879 -4.10695 1.90291 2.35694 3.28912 3.35528 3.38247 3.43466 3.55169 3.73863 4.13495 4.17187 4.31529 4.44415 4.49614 4.72370 4.86914 4.96252 4.96680 5.05596 5.11457 5.16263 5.21424 5.26750 5.30018 5.31567 5.33515 5.48445 5.51675 5.57029 5.66624 5.72690 5.79235 5.83452 5.88985 5.98614 6.09175 6.12250 6.20252 6.53703 6.98496 7.02922 7.04496 7.42151 7.45573 7.51982 7.90562 8.21736 8.39250 8.88595 9.06789 9.54656 11.02273 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.014434 B = 0.003026 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.452386 B = 9251.533817 C = 9989.241251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.360 6.360 3 C 0.435 3.565 4 O -0.501 6.501 5 C 0.134 3.866 6 N -0.664 5.664 7 C 0.068 3.932 8 C -0.136 4.136 9 C 0.505 3.495 10 O -0.545 6.545 11 N -0.602 5.602 12 C 0.083 3.917 13 C 0.244 3.756 14 C -0.525 4.525 15 H 0.058 0.942 16 C 0.060 3.940 17 N -0.895 5.895 18 Si 0.898 3.102 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.283 1.283 22 C -0.141 4.141 23 C 0.072 3.928 24 O -0.384 6.384 25 C 0.071 3.929 26 C -0.139 4.139 27 H 0.102 0.898 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.352 0.648 31 H 0.041 0.959 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.085 0.915 35 H 0.043 0.957 36 H 0.073 0.927 37 H 0.058 0.942 38 H 0.032 0.968 39 H 0.043 0.957 40 H 0.263 0.737 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.069 0.931 44 H 0.093 0.907 45 H 0.069 0.931 46 H 0.096 0.904 47 H 0.086 0.914 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.947 -0.733 24.057 24.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.276 6.276 3 C 0.275 3.725 4 O -0.387 6.387 5 C 0.041 3.959 6 N -0.297 5.297 7 C -0.060 4.060 8 C -0.177 4.177 9 C 0.291 3.709 10 O -0.423 6.423 11 N -0.334 5.334 12 C -0.061 4.061 13 C 0.125 3.875 14 C -0.564 4.564 15 H 0.076 0.924 16 C -0.142 4.142 17 N -0.534 5.534 18 Si 0.726 3.274 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.209 1.209 22 C -0.179 4.179 23 C -0.005 4.005 24 O -0.302 6.302 25 C -0.006 4.006 26 C -0.177 4.177 27 H 0.121 0.879 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.172 0.828 31 H 0.059 0.941 32 H 0.106 0.894 33 H 0.116 0.884 34 H 0.104 0.896 35 H 0.062 0.938 36 H 0.092 0.908 37 H 0.077 0.923 38 H 0.050 0.950 39 H 0.061 0.939 40 H 0.072 0.928 41 H 0.100 0.900 42 H 0.102 0.898 43 H 0.087 0.913 44 H 0.111 0.889 45 H 0.087 0.913 46 H 0.114 0.886 47 H 0.104 0.896 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.953 0.506 23.628 23.714 hybrid contribution -0.867 -0.174 -0.820 1.206 sum 1.086 0.332 22.808 22.836 Atomic orbital electron populations 1.23287 0.76125 1.03868 1.02600 1.86482 1.23736 1.33532 1.83866 1.25217 0.93375 0.81654 0.72258 1.90659 1.67205 1.36416 1.44392 1.21091 0.83210 0.95236 0.96393 1.60666 1.61064 1.05329 1.02670 1.21830 0.98443 0.99349 0.86409 1.21600 1.03218 0.98850 0.93986 1.20217 0.80879 0.83035 0.86817 1.90678 1.40411 1.31847 1.79341 1.48154 1.52676 1.19793 1.12808 1.21641 0.95235 0.88701 1.00500 1.19290 0.96289 0.97511 0.74385 1.21470 1.04005 1.37623 0.93339 0.92383 1.24947 0.95746 0.95667 0.97822 1.69944 1.24734 1.46711 1.12040 0.86438 0.81493 0.79427 0.80045 1.19760 1.20952 1.20864 1.22262 0.99014 1.03764 0.92840 1.22451 0.92097 0.87153 0.98789 1.87908 1.79154 1.36278 1.26873 1.22512 0.91914 1.02778 0.83362 1.22256 0.98401 0.94123 1.02919 0.87923 0.92003 0.91660 0.82840 0.94067 0.89437 0.88433 0.89623 0.93819 0.90801 0.92282 0.95049 0.93922 0.92769 0.90020 0.89783 0.91300 0.88877 0.91251 0.88629 0.89562 0.89468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.56 101.05 1.07 1.39 16 2 O -0.36 -4.07 9.52 -39.27 -0.37 -4.44 16 3 C 0.44 5.47 5.45 36.01 0.20 5.67 16 4 O -0.50 -7.71 15.78 -18.75 -0.30 -8.00 16 5 C 0.13 1.40 0.53 -132.57 -0.07 1.33 16 6 N -0.66 -6.58 4.82 -100.95 -0.49 -7.06 16 7 C 0.07 0.91 4.18 -3.83 -0.02 0.89 16 8 C -0.14 -1.84 4.45 -27.89 -0.12 -1.97 16 9 C 0.50 10.14 7.67 -10.98 -0.08 10.05 16 10 O -0.54 -13.48 15.56 5.56 0.09 -13.40 16 11 N -0.60 -12.50 2.86 -182.96 -0.52 -13.03 16 12 C 0.08 1.26 10.24 59.84 0.61 1.87 16 13 C 0.24 6.38 5.16 -5.19 -0.03 6.36 16 14 C -0.53 -14.89 9.39 -34.44 -0.32 -15.22 16 15 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 16 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 17 N -0.90 -26.66 13.29 55.43 0.74 -25.92 16 18 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 19 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 22 C -0.14 -1.14 5.05 -26.59 -0.13 -1.28 16 23 C 0.07 0.57 6.68 37.21 0.25 0.82 16 24 O -0.38 -4.06 10.77 -35.23 -0.38 -4.44 16 25 C 0.07 0.72 6.68 37.20 0.25 0.97 16 26 C -0.14 -1.56 4.20 -26.59 -0.11 -1.68 16 27 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 29 H 0.06 0.69 8.13 -51.92 -0.42 0.27 16 30 H 0.35 2.98 8.29 -39.29 -0.33 2.66 16 31 H 0.04 0.64 6.56 -51.93 -0.34 0.30 16 32 H 0.09 1.31 6.52 -51.93 -0.34 0.97 16 33 H 0.10 1.18 7.40 -51.93 -0.38 0.79 16 34 H 0.09 0.96 8.11 -51.93 -0.42 0.53 16 35 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.07 1.17 8.07 -51.93 -0.42 0.75 16 37 H 0.06 0.71 6.44 -51.92 -0.33 0.38 16 38 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 39 H 0.04 1.26 7.42 -51.93 -0.39 0.88 16 40 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 41 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.07 0.53 7.75 -51.93 -0.40 0.13 16 44 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.07 0.73 7.75 -51.93 -0.40 0.32 16 46 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 47 H 0.09 1.09 6.37 -51.93 -0.33 0.76 16 48 H 0.09 1.02 7.77 -51.92 -0.40 0.62 16 LS Contribution 386.92 15.07 5.83 5.83 Total: -1.00 -35.30 386.92 -6.87 -42.17 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -7.83 Total: 0.59 kcal Atomic # 6 Polarization: 9.47 SS G_CDS: 1.38 Total: 10.85 kcal Atomic # 7 Polarization: -45.74 SS G_CDS: -0.27 Total: -46.01 kcal Atomic # 8 Polarization: -29.31 SS G_CDS: -0.96 Total: -30.28 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.30 -6.87 -42.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473477134.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.223 kcal (2) G-P(sol) polarization free energy of solvation -35.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds