Wall clock time and date at job start Tue Mar 31 2020 15:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46506 * 119.99811 * 2 1 4 4 C 1.50703 * 109.47289 * 89.99713 * 3 2 1 5 5 H 1.07994 * 119.99399 * 0.02562 * 4 3 2 6 6 C 1.37874 * 119.99789 * 179.97438 * 4 3 2 7 7 N 1.31518 * 120.00144 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99733 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.46632 * 90.00476 * 8 6 4 10 10 H 1.48496 * 109.46690 * 210.00029 * 8 6 4 11 11 H 1.48498 * 109.47171 * 330.00226 * 8 6 4 12 12 C 1.34778 * 120.00131 * 179.97438 * 2 1 3 13 13 O 1.21279 * 119.99362 * 180.02562 * 12 2 1 14 14 C 1.50696 * 119.99888 * 0.02562 * 12 2 1 15 15 C 1.53004 * 109.46881 * 179.97438 * 14 12 2 16 16 N 1.46896 * 109.46912 * 180.02562 * 15 14 12 17 17 C 1.46897 * 110.99923 * 179.97438 * 16 15 14 18 18 H 1.09000 * 109.47057 * 35.00005 * 17 16 15 19 19 C 1.53008 * 109.47122 * 154.99784 * 17 16 15 20 20 C 1.52995 * 109.47404 * 295.00082 * 19 17 16 21 21 H 1.09008 * 109.86873 * 53.99079 * 20 19 17 22 22 C 1.54095 * 109.87922 * 174.99988 * 20 19 17 23 23 C 1.54806 * 104.18718 * 121.45536 * 22 20 19 24 24 C 1.54996 * 102.09454 * 20.88235 * 23 22 20 25 25 O 1.43744 * 109.87805 * 292.83329 * 20 19 17 26 26 C 1.50696 * 109.47259 * 274.99667 * 17 16 15 27 27 O 1.20827 * 120.00138 * 0.02562 * 26 17 16 28 28 O 1.34231 * 120.00166 * 179.97438 * 26 17 16 29 29 H 1.09006 * 109.47498 * 90.00412 * 1 2 3 30 30 H 1.09006 * 109.47571 * 210.00074 * 1 2 3 31 31 H 1.09005 * 109.47727 * 330.00531 * 1 2 3 32 32 H 1.09001 * 109.47060 * 210.00163 * 3 2 1 33 33 H 1.09004 * 109.47073 * 329.99652 * 3 2 1 34 34 H 0.96997 * 119.99752 * 179.97438 * 7 6 4 35 35 H 1.08997 * 109.47440 * 299.99997 * 14 12 2 36 36 H 1.09001 * 109.47288 * 59.99909 * 14 12 2 37 37 H 1.09002 * 109.46736 * 299.99893 * 15 14 12 38 38 H 1.09001 * 109.47233 * 59.99877 * 15 14 12 39 39 H 1.00904 * 110.99974 * 303.95549 * 16 15 14 40 40 H 1.09001 * 109.46760 * 55.00409 * 19 17 16 41 41 H 1.09006 * 109.47095 * 174.99885 * 19 17 16 42 42 H 1.09005 * 110.48728 * 240.13206 * 22 20 19 43 43 H 1.08995 * 110.49262 * 2.77630 * 22 20 19 44 44 H 1.09006 * 110.90892 * 139.07460 * 23 22 20 45 45 H 1.08995 * 110.91194 * 262.67961 * 23 22 20 46 46 H 1.08997 * 110.62053 * 81.47641 * 24 23 22 47 47 H 1.09005 * 110.61741 * 204.32007 * 24 23 22 48 48 H 0.96704 * 116.99928 * 180.02562 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4485 1.7039 1.4208 5 1 2.0980 1.0959 2.2416 6 6 3.1267 2.8776 1.6727 7 7 3.5540 3.6177 0.6730 8 14 3.4373 3.4173 3.4339 9 1 4.7319 2.8598 3.9013 10 1 3.4858 4.9002 3.4958 11 1 2.3414 2.9210 4.3043 12 6 2.1388 -1.1672 0.0005 13 8 3.3516 -1.1670 0.0010 14 6 1.3854 -2.4723 0.0005 15 6 2.3797 -3.6352 0.0005 16 7 1.6452 -4.9073 -0.0001 17 6 2.5697 -6.0489 -0.0007 18 1 3.4526 -5.8018 0.5888 19 6 1.8747 -7.2684 0.6084 20 6 1.5676 -6.9971 2.0824 21 1 1.0033 -6.0694 2.1787 22 6 0.7571 -8.1671 2.6728 23 6 1.6278 -8.6778 3.8465 24 6 2.5296 -7.4517 4.1392 25 8 2.7930 -6.9068 2.8284 26 6 2.9820 -6.3607 -1.4163 27 8 2.5503 -5.6995 -2.3308 28 8 3.8295 -7.3724 -1.6611 29 1 -0.3634 -0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3635 0.8900 0.5138 32 1 3.1498 1.1385 -0.5139 33 1 1.6083 2.0284 -0.5139 34 1 4.0308 4.4436 0.8502 35 1 0.7584 -2.5299 0.8902 36 1 0.7590 -2.5302 -0.8897 37 1 3.0063 -3.5774 -0.8895 38 1 3.0064 -3.5774 0.8905 39 1 1.0085 -4.9576 0.7810 40 1 0.9450 -7.4617 0.0731 41 1 2.5280 -8.1372 0.5273 42 1 -0.2082 -7.8165 3.0382 43 1 0.6221 -8.9517 1.9284 44 1 1.0106 -8.9218 4.7113 45 1 2.2258 -9.5367 3.5423 46 1 2.0018 -6.7258 4.7577 47 1 3.4563 -7.7632 4.6214 48 1 4.0650 -7.5339 -2.5850 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001573869657.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:59:00 Heat of formation + Delta-G solvation = -202.524865 kcal Electronic energy + Delta-G solvation = -28572.008570 eV Core-core repulsion = 24432.657220 eV Total energy + Delta-G solvation = -4139.351350 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.48970 -40.65915 -40.35790 -37.84707 -36.88685 -36.57746 -34.78596 -34.05686 -32.96674 -31.20213 -29.74793 -28.51969 -27.24780 -25.65209 -25.29385 -23.29398 -22.97914 -21.92409 -21.63876 -19.92241 -19.08029 -18.71189 -18.09314 -17.70213 -17.49154 -17.12472 -16.90374 -16.70922 -16.55700 -16.21613 -16.12204 -15.91366 -15.24932 -14.93674 -14.47198 -14.37362 -14.24631 -14.04984 -13.71486 -13.52037 -13.44735 -13.24061 -13.08149 -12.92287 -12.78633 -12.74565 -12.55576 -12.51666 -12.49693 -12.20144 -12.15234 -12.00596 -11.88958 -11.70016 -11.58746 -11.31517 -10.66401 -10.64457 -10.62698 -9.65955 -9.42229 -8.23391 -6.38899 1.22842 1.35563 1.39262 1.48981 1.83230 1.95671 2.29634 2.43074 2.90849 3.05740 3.10819 3.57634 3.65813 3.78654 3.93959 4.02393 4.03632 4.07001 4.14622 4.21591 4.33253 4.40525 4.46502 4.56675 4.62234 4.72992 4.73570 4.80986 4.86643 4.91173 4.95495 4.97473 5.00200 5.02554 5.05769 5.17583 5.22117 5.26347 5.55262 5.60612 5.68663 5.83474 5.99346 6.04730 6.29187 6.68422 6.78242 7.05279 7.26843 7.47418 8.83990 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.012199 B = 0.002723 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.640374 B =10281.689112 C =11562.671039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.611 5.611 3 C 0.257 3.743 4 C -0.542 4.542 5 H 0.055 0.945 6 C 0.004 3.996 7 N -0.931 5.931 8 Si 0.971 3.029 9 H -0.281 1.281 10 H -0.274 1.274 11 H -0.259 1.259 12 C 0.494 3.506 13 O -0.603 6.603 14 C -0.115 4.115 15 C 0.086 3.914 16 N -0.663 5.663 17 C 0.100 3.900 18 H 0.080 0.920 19 C -0.104 4.104 20 C 0.067 3.933 21 H 0.073 0.927 22 C -0.146 4.146 23 C -0.151 4.151 24 C 0.035 3.965 25 O -0.401 6.401 26 C 0.480 3.520 27 O -0.531 6.531 28 O -0.513 6.513 29 H 0.068 0.932 30 H 0.099 0.901 31 H 0.066 0.934 32 H -0.006 1.006 33 H 0.023 0.977 34 H 0.267 0.733 35 H 0.122 0.878 36 H 0.118 0.882 37 H 0.049 0.951 38 H 0.028 0.972 39 H 0.364 0.636 40 H 0.106 0.894 41 H 0.097 0.903 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.095 0.905 45 H 0.078 0.922 46 H 0.063 0.937 47 H 0.095 0.905 48 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.431 -29.502 4.560 31.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.342 5.342 3 C 0.135 3.865 4 C -0.581 4.581 5 H 0.074 0.926 6 C -0.194 4.194 7 N -0.571 5.571 8 Si 0.795 3.205 9 H -0.207 1.207 10 H -0.199 1.199 11 H -0.183 1.183 12 C 0.282 3.718 13 O -0.485 6.485 14 C -0.155 4.155 15 C -0.044 4.044 16 N -0.300 5.300 17 C -0.011 4.011 18 H 0.098 0.902 19 C -0.142 4.142 20 C 0.009 3.991 21 H 0.091 0.909 22 C -0.184 4.184 23 C -0.188 4.188 24 C -0.041 4.041 25 O -0.321 6.321 26 C 0.322 3.678 27 O -0.419 6.419 28 O -0.326 6.326 29 H 0.086 0.914 30 H 0.117 0.883 31 H 0.085 0.915 32 H 0.012 0.988 33 H 0.041 0.959 34 H 0.076 0.924 35 H 0.140 0.860 36 H 0.136 0.864 37 H 0.067 0.933 38 H 0.046 0.954 39 H 0.188 0.812 40 H 0.125 0.875 41 H 0.115 0.885 42 H 0.110 0.890 43 H 0.110 0.890 44 H 0.114 0.886 45 H 0.097 0.903 46 H 0.082 0.918 47 H 0.114 0.886 48 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -9.881 -28.989 3.905 30.875 hybrid contribution 1.130 0.921 0.718 1.625 sum -8.751 -28.068 4.623 29.762 Atomic orbital electron populations 1.21960 0.77626 1.04234 1.02591 1.48196 1.08570 1.06299 1.71133 1.18765 0.91007 0.80524 0.96170 1.21708 1.36854 1.06569 0.92939 0.92637 1.25927 0.94867 0.96415 1.02239 1.70066 1.38921 1.14869 1.33201 0.85369 0.78691 0.77547 0.78926 1.20708 1.19898 1.18268 1.21353 0.87780 0.86791 0.75827 1.90634 1.16882 1.88292 1.52718 1.21491 0.98727 0.88665 1.06633 1.21478 0.94834 0.87964 1.00083 1.59919 1.19345 0.99617 1.51106 1.20973 0.97477 0.93931 0.88756 0.90194 1.21919 1.02683 0.95488 0.94077 1.22937 0.85785 0.99297 0.91048 0.90898 1.22990 0.99392 0.97521 0.98477 1.23128 0.98349 0.98100 0.99237 1.23738 1.00723 0.94675 0.84932 1.88909 1.33266 1.84069 1.25863 1.23699 0.74874 0.76594 0.92640 1.90717 1.53733 1.49816 1.47629 1.84479 1.59989 1.49881 1.38291 0.91351 0.88290 0.91497 0.98815 0.95862 0.92385 0.86004 0.86427 0.93259 0.95389 0.81152 0.87517 0.88466 0.88971 0.88958 0.88624 0.90289 0.91830 0.88649 0.71253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.36 10.24 127.77 1.31 3.67 16 2 N -0.61 -27.01 2.86 -851.10 -2.43 -29.44 16 3 C 0.26 14.48 5.16 85.63 0.44 14.92 16 4 C -0.54 -32.11 9.39 25.60 0.24 -31.87 16 5 H 0.06 3.22 7.81 -2.91 -0.02 3.20 16 6 C 0.00 0.25 5.46 84.65 0.46 0.71 16 7 N -0.93 -57.86 13.29 21.45 0.28 -57.58 16 8 Si 0.97 45.65 29.54 68.60 2.03 47.68 16 9 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 10 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 11 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 12 C 0.49 21.57 7.67 87.66 0.67 22.24 16 13 O -0.60 -33.14 15.56 -3.02 -0.05 -33.19 16 14 C -0.12 -3.36 4.51 29.85 0.13 -3.23 16 15 C 0.09 2.63 4.67 86.31 0.40 3.03 16 16 N -0.66 -14.80 5.84 -495.45 -2.89 -17.70 16 17 C 0.10 2.10 2.52 44.17 0.11 2.22 16 18 H 0.08 1.94 7.44 -2.39 -0.02 1.92 16 19 C -0.10 -1.41 4.26 30.60 0.13 -1.28 16 20 C 0.07 0.87 3.31 30.96 0.10 0.97 16 21 H 0.07 0.89 6.30 -2.38 -0.02 0.88 16 22 C -0.15 -1.13 6.64 31.58 0.21 -0.92 16 23 C -0.15 -1.21 7.15 31.89 0.23 -0.99 16 24 C 0.04 0.45 7.72 72.66 0.56 1.01 16 25 O -0.40 -7.48 10.76 -148.98 -1.60 -9.09 16 26 C 0.48 11.47 7.51 71.23 0.53 12.01 16 27 O -0.53 -16.75 16.68 21.96 0.37 -16.38 16 28 O -0.51 -8.84 13.23 -51.43 -0.68 -9.52 16 29 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 30 H 0.10 2.18 6.44 -2.38 -0.02 2.17 16 31 H 0.07 2.12 8.07 -2.38 -0.02 2.10 16 32 H -0.01 -0.41 7.42 -2.39 -0.02 -0.43 16 33 H 0.02 1.33 8.07 -2.38 -0.02 1.31 16 34 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 35 H 0.12 2.69 7.40 -2.39 -0.02 2.67 16 36 H 0.12 3.01 8.11 -2.39 -0.02 2.99 16 37 H 0.05 1.84 7.58 -2.39 -0.02 1.82 16 38 H 0.03 0.94 8.01 -2.39 -0.02 0.92 16 39 H 0.36 6.08 6.42 -89.69 -0.58 5.50 16 40 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.10 1.26 8.00 -2.38 -0.02 1.24 16 42 H 0.09 0.50 8.14 -2.38 -0.02 0.48 16 43 H 0.09 0.53 7.70 -2.39 -0.02 0.51 16 44 H 0.10 0.48 8.14 -2.38 -0.02 0.46 16 45 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 46 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 47 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16 48 H 0.43 3.89 9.10 -74.05 -0.67 3.21 16 Total: -1.00 -86.81 394.45 0.29 -86.53 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -0.27 Total: 16.19 kcal Atomic # 6 Polarization: 16.95 SS G_CDS: 5.54 Total: 22.49 kcal Atomic # 7 Polarization: -99.67 SS G_CDS: -5.04 Total: -104.71 kcal Atomic # 8 Polarization: -66.21 SS G_CDS: -1.96 Total: -68.17 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -86.81 0.29 -86.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573869657.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.999 kcal (2) G-P(sol) polarization free energy of solvation -86.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds