Wall clock time and date at job start Tue Mar 31 2020 15:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47092 * 2 1 4 4 C 1.53002 * 109.47454 * 239.99992 * 2 1 3 5 5 O 1.45206 * 109.47129 * 119.99823 * 2 1 3 6 6 C 1.34226 * 116.99826 * 60.00523 * 5 2 1 7 7 O 1.20826 * 120.00044 * 359.97438 * 6 5 2 8 8 C 1.50700 * 119.99715 * 180.02562 * 6 5 2 9 9 C 1.50705 * 109.50855 * 84.99819 * 8 6 5 10 10 O 1.21281 * 120.00205 * 94.99917 * 9 8 6 11 11 N 1.34777 * 119.99487 * 274.99866 * 9 8 6 12 12 C 1.46501 * 119.99387 * 180.02562 * 11 9 8 13 13 C 1.52995 * 109.46918 * 180.02562 * 12 11 9 14 14 C 1.50702 * 109.47545 * 179.97438 * 13 12 11 15 15 H 1.08003 * 119.99436 * 359.97438 * 14 13 12 16 16 C 1.37870 * 120.00270 * 179.97438 * 14 13 12 17 17 N 1.31517 * 120.00179 * 180.02562 * 16 14 13 18 18 Si 1.86804 * 120.00290 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.46969 * 89.99794 * 18 16 14 20 20 H 1.48498 * 109.46965 * 210.00221 * 18 16 14 21 21 H 1.48503 * 109.46812 * 330.00071 * 18 16 14 22 22 C 1.53107 * 109.50550 * 205.08296 * 8 6 5 23 23 N 1.47014 * 109.25811 * 176.78581 * 22 8 6 24 24 C 1.47020 * 110.74935 * 301.38376 * 23 22 8 25 25 C 1.53097 * 109.25842 * 58.61739 * 24 23 22 26 26 O 1.43008 * 109.50803 * 324.90713 * 8 6 5 27 27 H 1.09004 * 109.47059 * 299.99666 * 1 2 3 28 28 H 1.08992 * 109.47060 * 60.00150 * 1 2 3 29 29 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47375 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47045 * 299.99867 * 3 2 1 32 32 H 1.09000 * 109.47140 * 59.99774 * 3 2 1 33 33 H 1.09004 * 109.47006 * 299.99897 * 4 2 1 34 34 H 1.09002 * 109.46838 * 59.99394 * 4 2 1 35 35 H 1.08992 * 109.47056 * 180.02562 * 4 2 1 36 36 H 0.96993 * 120.00501 * 359.97438 * 11 9 8 37 37 H 1.09006 * 109.47337 * 299.99576 * 12 11 9 38 38 H 1.08996 * 109.47647 * 59.99984 * 12 11 9 39 39 H 1.09007 * 109.47140 * 299.99765 * 13 12 11 40 40 H 1.09000 * 109.47598 * 59.99634 * 13 12 11 41 41 H 0.96998 * 120.00211 * 179.97438 * 17 16 14 42 42 H 1.08996 * 109.50526 * 296.71756 * 22 8 6 43 43 H 1.08995 * 109.50322 * 56.80114 * 22 8 6 44 44 H 1.00899 * 110.99981 * 177.60895 * 23 22 8 45 45 H 1.08999 * 109.50378 * 178.55759 * 24 23 22 46 46 H 1.09003 * 109.50392 * 298.68087 * 24 23 22 47 47 H 1.08996 * 109.50366 * 63.08634 * 25 24 23 48 48 H 1.09001 * 109.50568 * 183.21792 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6535 -1.9684 1.3379 7 8 0.9561 -2.5025 0.5082 8 6 2.1175 -2.7433 2.5442 9 6 1.1770 -2.4936 3.6950 10 8 0.2656 -3.2639 3.9115 11 7 1.3489 -1.4143 4.4836 12 6 0.4350 -1.1719 5.6027 13 6 0.8483 0.1089 6.3304 14 6 -0.0921 0.3588 7.4812 15 1 -0.9036 -0.3273 7.6740 16 6 0.0836 1.4630 8.2879 17 7 -0.7367 1.6807 9.2925 18 14 1.4878 2.6491 7.9548 19 1 1.0284 3.7111 7.0241 20 1 1.9278 3.2663 9.2318 21 1 2.6234 1.9127 7.3438 22 6 2.1368 -4.2384 2.2150 23 7 2.6630 -4.9823 3.3687 24 6 4.0175 -4.5237 3.7103 25 6 3.9793 -3.0258 4.0245 26 8 3.4356 -2.3218 2.9045 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6768 -1.7490 -1.2492 34 1 1.6767 -0.2074 -2.1392 35 1 3.1300 -0.7216 -1.2489 36 1 2.0780 -0.7984 4.3108 37 1 -0.5815 -1.0626 5.2246 38 1 0.4768 -2.0129 6.2948 39 1 1.8649 0.0002 6.7085 40 1 0.8062 0.9499 5.6382 41 1 -0.6129 2.4573 9.8602 42 1 1.1239 -4.5759 1.9957 43 1 2.7739 -4.4119 1.3478 44 1 2.6509 -5.9760 3.1943 45 1 4.3774 -5.0696 4.5824 46 1 4.6854 -4.7019 2.8674 47 1 3.3538 -2.8536 4.9004 48 1 4.9902 -2.6696 4.2225 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001575148053.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:06 Heat of formation + Delta-G solvation = -157.900036 kcal Electronic energy + Delta-G solvation = -30573.772033 eV Core-core repulsion = 26436.355761 eV Total energy + Delta-G solvation = -4137.416272 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.61833 -40.18419 -38.23899 -37.26294 -35.39632 -34.79060 -34.20594 -32.76642 -31.91030 -30.15374 -27.67054 -27.58671 -27.55436 -25.37324 -24.88901 -22.72161 -22.00969 -20.77686 -20.24001 -19.40561 -18.29253 -17.71973 -17.11019 -16.87451 -16.47792 -15.99330 -15.41161 -15.31527 -15.02051 -14.85500 -14.52079 -14.42286 -14.36940 -14.13021 -13.88319 -13.75762 -13.40298 -13.08508 -12.68252 -12.63872 -12.52284 -12.38682 -12.18291 -12.09810 -11.80341 -11.66450 -11.49579 -11.44870 -11.24040 -11.17778 -10.65901 -10.58623 -10.40036 -10.25908 -10.18099 -9.95228 -9.45159 -9.28046 -8.76612 -8.65040 -8.55550 -6.10704 -4.10913 1.69797 2.11594 2.85533 3.12517 3.26021 3.33806 3.35297 3.44483 3.84326 4.31313 4.38340 4.43000 4.50973 4.55434 4.65155 4.69802 4.73448 4.86985 5.04196 5.22334 5.22998 5.27313 5.34409 5.43519 5.47658 5.51468 5.55194 5.62087 5.63697 5.67096 5.81852 6.00953 6.06270 6.10551 6.18323 6.23786 6.42567 6.54562 6.57413 6.68798 6.96212 7.12210 7.22630 7.50898 7.66038 7.79339 8.37891 8.46206 8.93466 9.49435 11.02269 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.010556 B = 0.004319 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.901175 B = 6481.690705 C = 7949.539235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.114 3.886 3 C -0.141 4.141 4 C -0.182 4.182 5 O -0.328 6.328 6 C 0.495 3.505 7 O -0.482 6.482 8 C 0.112 3.888 9 C 0.503 3.497 10 O -0.509 6.509 11 N -0.712 5.712 12 C 0.130 3.870 13 C -0.021 4.021 14 C -0.522 4.522 15 H 0.076 0.924 16 C 0.070 3.930 17 N -0.898 5.898 18 Si 0.880 3.120 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.265 1.265 22 C 0.061 3.939 23 N -0.677 5.677 24 C 0.017 3.983 25 C 0.049 3.951 26 O -0.353 6.353 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.402 0.598 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.023 0.977 40 H 0.018 0.982 41 H 0.265 0.735 42 H 0.111 0.889 43 H 0.051 0.949 44 H 0.356 0.644 45 H 0.093 0.907 46 H 0.043 0.957 47 H 0.074 0.926 48 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.041 -7.396 -20.216 24.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.078 3.922 3 C -0.198 4.198 4 C -0.239 4.239 5 O -0.244 6.244 6 C 0.335 3.665 7 O -0.369 6.369 8 C 0.066 3.934 9 C 0.284 3.716 10 O -0.383 6.383 11 N -0.364 5.364 12 C 0.009 3.991 13 C -0.059 4.059 14 C -0.560 4.560 15 H 0.094 0.906 16 C -0.132 4.132 17 N -0.537 5.537 18 Si 0.707 3.293 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.190 1.190 22 C -0.069 4.069 23 N -0.310 5.310 24 C -0.113 4.113 25 C -0.028 4.028 26 O -0.272 6.272 27 H 0.086 0.914 28 H 0.092 0.908 29 H 0.101 0.899 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.090 0.910 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.237 0.763 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.041 0.959 40 H 0.036 0.964 41 H 0.074 0.926 42 H 0.129 0.871 43 H 0.070 0.930 44 H 0.176 0.824 45 H 0.112 0.888 46 H 0.061 0.939 47 H 0.092 0.908 48 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 10.900 -7.395 -19.789 23.772 hybrid contribution 1.434 0.475 -0.762 1.693 sum 12.334 -6.920 -20.552 24.948 Atomic orbital electron populations 1.22524 0.93719 1.04844 1.03262 1.22312 0.94674 0.92521 0.82667 1.21856 1.02304 0.92254 1.03399 1.22485 1.01765 1.02960 0.96692 1.86633 1.68655 1.24057 1.45084 1.22317 0.77620 0.81314 0.85200 1.90620 1.34697 1.70427 1.41130 1.21694 0.85478 0.94709 0.91489 1.20018 0.85594 0.82351 0.83610 1.90726 1.31684 1.45358 1.70573 1.46323 1.33455 1.25371 1.31230 1.21586 0.92099 0.99711 0.85752 1.19793 0.97877 0.92114 0.96110 1.20901 1.13856 1.10322 1.10971 0.90602 1.24982 0.96010 0.97492 0.94678 1.69903 1.37458 1.28684 1.17617 0.86777 0.83228 0.81470 0.77789 1.20202 1.21272 1.18980 1.22130 1.03406 0.89558 0.91814 1.60339 1.22384 1.09311 1.38946 1.22678 0.89942 0.97083 1.01575 1.23010 1.00341 0.90590 0.88813 1.88138 1.26908 1.61453 1.50666 0.91422 0.90809 0.89904 0.91321 0.90256 0.90994 0.90014 0.90853 0.91850 0.76305 0.91845 0.91590 0.95920 0.96361 0.92553 0.87084 0.93042 0.82449 0.88826 0.93913 0.90762 0.86950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.14 8.37 37.16 0.31 -1.83 16 2 C 0.11 1.28 1.13 -90.62 -0.10 1.18 16 3 C -0.14 -1.27 8.85 37.16 0.33 -0.94 16 4 C -0.18 -1.78 8.37 37.16 0.31 -1.47 16 5 O -0.33 -4.52 9.64 -44.39 -0.43 -4.95 16 6 C 0.50 7.28 6.13 36.01 0.22 7.50 16 7 O -0.48 -7.33 11.67 -18.75 -0.22 -7.55 16 8 C 0.11 1.62 0.99 -92.87 -0.09 1.53 16 9 C 0.50 8.83 5.25 -10.98 -0.06 8.77 16 10 O -0.51 -10.49 15.98 5.56 0.09 -10.40 16 11 N -0.71 -12.51 4.79 -60.29 -0.29 -12.80 16 12 C 0.13 2.69 5.61 -4.04 -0.02 2.67 16 13 C -0.02 -0.49 4.16 -27.88 -0.12 -0.60 16 14 C -0.52 -14.57 9.66 -34.44 -0.33 -14.91 16 15 H 0.08 2.30 7.99 -52.48 -0.42 1.88 16 16 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 17 N -0.90 -27.26 13.96 55.43 0.77 -26.48 16 18 Si 0.88 21.00 27.47 -169.99 -4.67 16.33 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.27 -5.97 6.54 56.52 0.37 -5.60 16 22 C 0.06 0.78 4.55 -3.71 -0.02 0.76 16 23 N -0.68 -7.72 6.54 -113.49 -0.74 -8.47 16 24 C 0.02 0.16 6.76 -3.71 -0.03 0.13 16 25 C 0.05 0.54 6.64 37.21 0.25 0.78 16 26 O -0.35 -4.60 9.41 -49.01 -0.46 -5.06 16 27 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.08 1.11 5.89 -51.93 -0.31 0.80 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.08 0.93 5.89 -51.93 -0.31 0.63 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.40 6.43 7.91 -40.82 -0.32 6.11 16 37 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 38 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 39 H 0.02 0.51 7.20 -51.93 -0.37 0.13 16 40 H 0.02 0.41 7.57 -51.93 -0.39 0.02 16 41 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 42 H 0.11 1.56 7.60 -51.93 -0.39 1.16 16 43 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 44 H 0.36 3.16 8.90 -39.29 -0.35 2.81 16 45 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.07 0.96 6.76 -51.93 -0.35 0.61 16 48 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 382.01 15.07 5.76 5.76 Total: -1.00 -33.07 382.01 -7.51 -40.59 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -7.88 Total: 7.56 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: 0.56 Total: 5.48 kcal Atomic # 7 Polarization: -47.49 SS G_CDS: -0.26 Total: -47.75 kcal Atomic # 8 Polarization: -26.95 SS G_CDS: -1.02 Total: -27.97 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.67 Total: 16.33 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.07 -7.51 -40.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575148053.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.314 kcal (2) G-P(sol) polarization free energy of solvation -33.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds