Wall clock time and date at job start Tue Mar 31 2020 16:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34231 * 117.00279 * 2 1 4 4 O 1.20830 * 119.99768 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00123 * 179.97438 * 3 2 1 6 6 N 1.46501 * 109.61371 * 325.21468 * 5 3 2 7 7 C 1.34779 * 119.99978 * 59.78343 * 6 5 3 8 8 O 1.21289 * 119.99773 * 359.97438 * 7 6 5 9 9 C 1.50696 * 120.00189 * 180.02562 * 7 6 5 10 10 H 1.09006 * 109.46652 * 319.99331 * 9 7 6 11 11 N 1.46896 * 109.47114 * 199.99815 * 9 7 6 12 12 C 1.52997 * 109.47412 * 79.99375 * 9 7 6 13 13 C 1.53001 * 109.46970 * 185.00113 * 12 9 7 14 14 C 1.53006 * 109.46854 * 180.02562 * 13 12 9 15 15 C 1.50695 * 109.46980 * 179.97438 * 14 13 12 16 16 H 1.08000 * 119.99973 * 0.02562 * 15 14 13 17 17 C 1.37880 * 120.00030 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99718 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00233 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46639 * 90.00152 * 19 17 15 21 21 H 1.48499 * 109.47234 * 210.00366 * 19 17 15 22 22 H 1.48498 * 109.46974 * 330.00850 * 19 17 15 23 23 C 1.53176 * 109.54195 * 204.99583 * 5 3 2 24 24 C 1.53093 * 109.16348 * 183.15112 * 23 5 3 25 25 O 1.42904 * 109.42351 * 57.60111 * 24 23 5 26 26 C 1.42902 * 114.09961 * 298.86177 * 25 24 23 27 27 C 1.53094 * 109.42545 * 61.14161 * 26 25 24 28 28 H 1.08995 * 109.47054 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47331 * 300.00943 * 1 2 3 30 30 H 1.09001 * 109.46753 * 60.00732 * 1 2 3 31 31 H 0.96993 * 120.00019 * 239.77375 * 6 5 3 32 32 H 1.00903 * 111.00092 * 299.99831 * 11 9 7 33 33 H 1.00899 * 111.00223 * 63.95229 * 11 9 7 34 34 H 1.08994 * 109.47209 * 305.00177 * 12 9 7 35 35 H 1.09001 * 109.46810 * 65.00522 * 12 9 7 36 36 H 1.09004 * 109.47203 * 299.99852 * 13 12 9 37 37 H 1.08995 * 109.47304 * 60.00222 * 13 12 9 38 38 H 1.08995 * 109.47039 * 300.00524 * 14 13 12 39 39 H 1.09007 * 109.46616 * 60.00076 * 14 13 12 40 40 H 0.97008 * 120.00033 * 179.97438 * 18 17 15 41 41 H 1.09004 * 109.52469 * 63.24544 * 23 5 3 42 42 H 1.08998 * 109.57356 * 303.08650 * 23 5 3 43 43 H 1.09002 * 109.48198 * 177.59219 * 24 23 5 44 44 H 1.08999 * 109.48029 * 297.61833 * 24 23 5 45 45 H 1.09000 * 109.47314 * 301.15801 * 26 25 24 46 46 H 1.09001 * 109.49082 * 181.13246 * 26 25 24 47 47 H 1.08997 * 109.52488 * 182.49772 * 27 26 25 48 48 H 1.08995 * 109.52127 * 62.29758 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 -0.0005 5 6 3.5664 1.2748 0.0006 6 7 4.1164 0.1689 0.7883 7 6 3.8557 -1.1053 0.4347 8 8 3.1653 -1.3363 -0.5354 9 6 4.4211 -2.2430 1.2453 10 1 5.4428 -2.0053 1.5417 11 7 4.4186 -3.4692 0.4364 12 6 3.5637 -2.4545 2.4947 13 6 4.2068 -3.5243 3.3795 14 6 3.3490 -3.7363 4.6286 15 6 3.9820 -4.7905 5.4997 16 1 4.9041 -5.2618 5.1933 17 6 3.3845 -5.1525 6.6884 18 7 2.2619 -4.5781 7.0617 19 14 4.1688 -6.4598 7.7679 20 1 5.1068 -5.8160 8.7225 21 1 3.1110 -7.1789 8.5222 22 1 4.9124 -7.4234 6.9172 23 6 4.0094 2.6083 0.6105 24 6 5.5348 2.7133 0.5350 25 8 5.9527 2.5927 -0.8262 26 6 5.6072 1.3466 -1.4344 27 6 4.0847 1.1867 -1.4382 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5140 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 4.6684 0.3536 1.5642 32 1 3.4821 -3.7109 0.1490 33 1 5.0294 -3.3773 -0.3614 34 1 3.4928 -1.5189 3.0493 35 1 2.5656 -2.7787 2.1998 36 1 4.2777 -4.4600 2.8248 37 1 5.2048 -3.2002 3.6743 38 1 3.2776 -2.8007 5.1833 39 1 2.3511 -4.0606 4.3333 40 1 1.8413 -4.8330 7.8979 41 1 3.6921 2.6557 1.6522 42 1 3.5597 3.4312 0.0549 43 1 5.8527 3.6787 0.9287 44 1 5.9838 1.9144 1.1252 45 1 6.0571 0.5297 -0.8702 46 1 5.9772 1.3273 -2.4595 47 1 3.8212 0.2174 -1.8614 48 1 3.6366 1.9803 -2.0360 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001578781925.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:00:40 Heat of formation + Delta-G solvation = -202.056921 kcal Electronic energy + Delta-G solvation = -29949.273219 eV Core-core repulsion = 25809.942161 eV Total energy + Delta-G solvation = -4139.331058 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.51866 -40.78549 -39.87678 -37.65261 -37.16974 -36.23879 -35.19273 -33.09897 -32.70713 -32.30448 -29.52725 -29.15975 -27.14896 -26.31712 -24.87231 -24.18425 -22.83762 -21.84982 -21.39072 -20.56454 -19.08427 -18.58565 -18.40228 -17.90747 -17.70809 -17.26951 -16.96520 -16.87202 -16.45529 -16.19635 -15.91230 -15.60353 -15.22587 -15.12194 -14.69865 -14.55699 -14.43590 -14.20689 -14.10351 -13.66236 -13.60998 -13.46920 -13.10136 -13.06390 -12.82150 -12.50263 -12.45351 -12.33726 -12.27328 -12.08286 -12.00101 -11.85257 -11.43942 -11.37285 -11.27290 -11.18081 -10.86247 -10.75370 -10.50355 -10.25222 -9.60041 -8.15852 -6.26053 0.88061 1.42412 1.43729 1.48280 1.55004 1.70978 2.01685 2.44549 2.88256 3.16878 3.17489 3.44290 3.57792 3.59894 3.80863 3.82260 4.06597 4.12957 4.14709 4.19239 4.22398 4.27101 4.27505 4.51543 4.56492 4.58130 4.60956 4.72860 4.74186 4.87492 4.93211 4.96027 4.98061 5.17297 5.21010 5.27788 5.31890 5.37674 5.63320 5.87457 5.96417 6.10662 6.15370 6.32515 6.40987 6.54492 6.57444 6.92290 7.16865 7.43160 8.95827 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.015579 B = 0.002850 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.911477 B = 9823.272736 C =10284.712656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.331 6.331 3 C 0.453 3.547 4 O -0.534 6.534 5 C 0.191 3.809 6 N -0.713 5.713 7 C 0.488 3.512 8 O -0.531 6.531 9 C 0.092 3.908 10 H 0.124 0.876 11 N -0.817 5.817 12 C -0.092 4.092 13 C -0.083 4.083 14 C 0.021 3.979 15 C -0.538 4.538 16 H 0.061 0.939 17 C -0.003 4.003 18 N -0.936 5.936 19 Si 0.962 3.038 20 H -0.271 1.271 21 H -0.285 1.285 22 H -0.263 1.263 23 C -0.147 4.147 24 C 0.062 3.938 25 O -0.391 6.391 26 C 0.073 3.927 27 C -0.158 4.158 28 H 0.114 0.886 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.419 0.581 32 H 0.346 0.654 33 H 0.350 0.650 34 H 0.067 0.933 35 H 0.044 0.956 36 H 0.056 0.944 37 H 0.056 0.944 38 H -0.010 1.010 39 H -0.017 1.017 40 H 0.262 0.738 41 H 0.096 0.904 42 H 0.092 0.908 43 H 0.124 0.876 44 H 0.073 0.927 45 H 0.063 0.937 46 H 0.113 0.887 47 H 0.091 0.909 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.863 14.865 -17.833 24.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.245 6.245 3 C 0.296 3.704 4 O -0.424 6.424 5 C 0.102 3.898 6 N -0.370 5.370 7 C 0.273 3.727 8 O -0.406 6.406 9 C -0.024 4.024 10 H 0.141 0.859 11 N -0.346 5.346 12 C -0.131 4.131 13 C -0.121 4.121 14 C -0.016 4.016 15 C -0.576 4.576 16 H 0.079 0.921 17 C -0.200 4.200 18 N -0.577 5.577 19 Si 0.787 3.213 20 H -0.196 1.196 21 H -0.211 1.211 22 H -0.187 1.187 23 C -0.185 4.185 24 C -0.014 4.014 25 O -0.310 6.310 26 C -0.004 4.004 27 C -0.197 4.197 28 H 0.133 0.867 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.258 0.742 32 H 0.160 0.840 33 H 0.164 0.836 34 H 0.086 0.914 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.009 0.991 39 H 0.001 0.999 40 H 0.070 0.930 41 H 0.115 0.885 42 H 0.111 0.889 43 H 0.142 0.858 44 H 0.091 0.909 45 H 0.081 0.919 46 H 0.131 0.869 47 H 0.109 0.891 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 6.398 14.717 -17.857 24.008 hybrid contribution -1.183 -0.035 0.531 1.297 sum 5.215 14.682 -17.326 23.301 Atomic orbital electron populations 1.23444 0.76481 1.04812 1.02128 1.86893 1.23475 1.31892 1.82218 1.24647 0.92921 0.81582 0.71295 1.90641 1.67522 1.37242 1.46985 1.20232 0.84225 0.89971 0.95341 1.46175 1.54270 1.04293 1.32259 1.22415 0.79834 0.84774 0.85640 1.90678 1.36892 1.84324 1.28710 1.21574 1.01470 0.86342 0.93034 0.85878 1.59027 1.16302 1.31383 1.27927 1.21421 0.97990 0.99674 0.93979 1.21279 0.98166 0.98073 0.94571 1.19057 0.94391 0.94779 0.93338 1.21749 1.08851 1.21891 1.05109 0.92120 1.25979 0.95468 0.98972 0.99582 1.70105 1.19588 1.44512 1.23468 0.85488 0.78099 0.79063 0.78656 1.19634 1.21086 1.18720 1.22452 0.99394 0.93400 1.03228 1.22785 0.90596 1.04800 0.83220 1.87960 1.79141 1.37158 1.26753 1.22559 0.91320 0.86419 1.00099 1.22563 0.99210 1.04767 0.93137 0.86740 0.92313 0.91734 0.74237 0.84037 0.83606 0.91394 0.93698 0.92512 0.92531 0.99116 0.99902 0.92966 0.88516 0.88928 0.85845 0.90924 0.91858 0.86904 0.89088 0.90185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.58 10.56 113.37 1.20 1.77 16 2 O -0.33 -9.16 6.72 -43.67 -0.29 -9.45 16 3 C 0.45 11.83 6.72 71.24 0.48 12.31 16 4 O -0.53 -15.93 15.79 21.95 0.35 -15.58 16 5 C 0.19 3.63 0.64 2.98 0.00 3.63 16 6 N -0.71 -12.15 4.22 -425.77 -1.80 -13.94 16 7 C 0.49 10.55 6.01 87.66 0.53 11.08 16 8 O -0.53 -14.07 11.51 20.39 0.23 -13.84 16 9 C 0.09 2.04 3.15 44.17 0.14 2.18 16 10 H 0.12 2.19 8.14 -2.38 -0.02 2.17 16 11 N -0.82 -18.74 8.44 -171.81 -1.45 -20.19 16 12 C -0.09 -2.79 4.84 30.59 0.15 -2.65 16 13 C -0.08 -3.21 5.04 30.60 0.15 -3.06 16 14 C 0.02 1.11 4.97 29.85 0.15 1.26 16 15 C -0.54 -30.47 9.11 25.60 0.23 -30.24 16 16 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 17 C 0.00 -0.16 5.46 84.66 0.46 0.30 16 18 N -0.94 -57.20 13.29 21.45 0.28 -56.91 16 19 Si 0.96 44.17 29.54 68.60 2.03 46.20 16 20 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 21 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 22 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 23 C -0.15 -2.16 4.55 30.68 0.14 -2.02 16 24 C 0.06 0.68 6.67 72.01 0.48 1.16 16 25 O -0.39 -5.96 10.77 -148.98 -1.60 -7.57 16 26 C 0.07 1.00 6.68 72.01 0.48 1.48 16 27 C -0.16 -2.80 4.75 30.69 0.15 -2.66 16 28 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.06 1.35 8.13 -2.39 -0.02 1.33 16 30 H 0.06 1.39 8.13 -2.39 -0.02 1.37 16 31 H 0.42 5.10 7.52 -92.71 -0.70 4.40 16 32 H 0.35 8.67 8.58 -89.69 -0.77 7.90 16 33 H 0.35 6.50 9.06 -89.69 -0.81 5.69 16 34 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.06 2.27 7.75 -2.39 -0.02 2.25 16 37 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 38 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 39 H -0.02 -1.00 8.14 -2.38 -0.02 -1.02 16 40 H 0.26 15.04 8.31 -92.70 -0.77 14.27 16 41 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.09 1.58 7.77 -2.39 -0.02 1.57 16 43 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.07 0.57 7.09 -2.39 -0.02 0.56 16 45 H 0.06 0.79 7.75 -2.39 -0.02 0.77 16 46 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 47 H 0.09 1.91 6.14 -2.39 -0.01 1.90 16 48 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -73.71 384.28 1.19 -72.52 By element: Atomic # 1 Polarization: 25.51 SS G_CDS: -1.29 Total: 24.22 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: 4.74 Total: -5.46 kcal Atomic # 7 Polarization: -88.08 SS G_CDS: -2.96 Total: -91.04 kcal Atomic # 8 Polarization: -45.12 SS G_CDS: -1.32 Total: -46.44 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -73.71 1.19 -72.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578781925.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.540 kcal (2) G-P(sol) polarization free energy of solvation -73.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds