Wall clock time and date at job start Tue Mar 31 2020 16:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34223 * 117.00264 * 2 1 4 4 O 1.20832 * 120.00239 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00053 * 179.97438 * 3 2 1 6 6 N 1.46499 * 109.62041 * 325.22129 * 5 3 2 7 7 C 1.34781 * 119.99830 * 59.77560 * 6 5 3 8 8 O 1.21292 * 119.99906 * 0.02562 * 7 6 5 9 9 C 1.50701 * 120.00366 * 180.02562 * 7 6 5 10 10 H 1.09004 * 109.46845 * 39.99830 * 9 7 6 11 11 N 1.46900 * 109.47073 * 159.99838 * 9 7 6 12 12 C 1.52998 * 109.46728 * 280.00074 * 9 7 6 13 13 C 1.53010 * 109.46799 * 174.99791 * 12 9 7 14 14 C 1.52998 * 109.46799 * 179.97438 * 13 12 9 15 15 C 1.50701 * 109.46604 * 179.97438 * 14 13 12 16 16 H 1.08002 * 120.00426 * 359.97438 * 15 14 13 17 17 C 1.37875 * 119.99970 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00336 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 120.00088 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47525 * 89.99378 * 19 17 15 21 21 H 1.48498 * 109.47352 * 210.00042 * 19 17 15 22 22 H 1.48505 * 109.47091 * 329.99640 * 19 17 15 23 23 C 1.53181 * 109.54569 * 204.99667 * 5 3 2 24 24 C 1.53090 * 109.16481 * 183.15083 * 23 5 3 25 25 O 1.42905 * 109.41466 * 57.61337 * 24 23 5 26 26 C 1.42905 * 114.09831 * 298.84306 * 25 24 23 27 27 C 1.53087 * 109.41504 * 61.15479 * 26 25 24 28 28 H 1.09002 * 109.47227 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46854 * 300.00623 * 1 2 3 30 30 H 1.09002 * 109.46618 * 59.99964 * 1 2 3 31 31 H 0.97001 * 120.00699 * 239.77997 * 6 5 3 32 32 H 1.00903 * 110.99451 * 60.00413 * 11 9 7 33 33 H 1.00902 * 110.99486 * 183.95533 * 11 9 7 34 34 H 1.08999 * 109.47248 * 294.99433 * 12 9 7 35 35 H 1.08997 * 109.47141 * 55.00300 * 12 9 7 36 36 H 1.08999 * 109.46929 * 299.99839 * 13 12 9 37 37 H 1.08997 * 109.47080 * 59.99831 * 13 12 9 38 38 H 1.08999 * 109.47248 * 299.99643 * 14 13 12 39 39 H 1.08997 * 109.47141 * 60.00509 * 14 13 12 40 40 H 0.97003 * 120.00258 * 180.02562 * 18 17 15 41 41 H 1.09007 * 109.52008 * 63.25173 * 23 5 3 42 42 H 1.08996 * 109.52389 * 303.06046 * 23 5 3 43 43 H 1.08998 * 109.48371 * 297.63244 * 24 23 5 44 44 H 1.09005 * 109.49161 * 177.59641 * 24 23 5 45 45 H 1.08994 * 109.48072 * 181.14100 * 26 25 24 46 46 H 1.09001 * 109.47741 * 301.17313 * 26 25 24 47 47 H 1.09001 * 109.52122 * 182.48887 * 27 26 25 48 48 H 1.08996 * 109.52817 * 62.29974 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2747 0.0006 6 7 4.1165 0.1687 0.7881 7 6 3.8558 -1.1054 0.4345 8 8 3.1660 -1.3364 -0.5361 9 6 4.4212 -2.2432 1.2449 10 1 4.3651 -1.9970 2.3053 11 7 3.6457 -3.4632 0.9837 12 6 5.8817 -2.4731 0.8513 13 6 6.4922 -3.5429 1.7591 14 6 7.9525 -3.7732 1.3651 15 6 8.5540 -4.8264 2.2596 16 1 7.9547 -5.2852 3.0322 17 6 9.8693 -5.2042 2.0918 18 7 10.3941 -6.1237 2.8721 19 14 10.9060 -4.4103 0.7560 20 1 11.5812 -3.2062 1.3034 21 1 11.9276 -5.3779 0.2815 22 1 10.0334 -4.0155 -0.3789 23 6 4.0094 2.6082 0.6105 24 6 5.5349 2.7131 0.5350 25 8 5.9526 2.5928 -0.8263 26 6 5.6072 1.3466 -1.4346 27 6 4.0847 1.1868 -1.4382 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 4.6685 0.3533 1.5642 32 1 3.6822 -3.7125 0.0067 33 1 3.9643 -4.2251 1.5635 34 1 5.9306 -2.8055 -0.1856 35 1 6.4384 -1.5425 0.9612 36 1 6.4434 -3.2104 2.7960 37 1 5.9355 -4.4735 1.6493 38 1 8.0010 -4.1058 0.3282 39 1 8.5095 -2.8427 1.4746 40 1 11.3195 -6.3893 2.7542 41 1 3.6922 2.6555 1.6523 42 1 3.5598 3.4305 0.0541 43 1 5.9839 1.9141 1.1249 44 1 5.8530 3.6785 0.9288 45 1 5.9771 1.3276 -2.4597 46 1 6.0571 0.5297 -0.8704 47 1 3.8212 0.2176 -1.8617 48 1 3.6364 1.9804 -2.0360 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001578781926.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:00:44 Heat of formation + Delta-G solvation = -173.368370 kcal Electronic energy + Delta-G solvation = -30041.532569 eV Core-core repulsion = 25903.445540 eV Total energy + Delta-G solvation = -4138.087029 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.62508 -39.80088 -39.01531 -36.66814 -36.30413 -35.28292 -33.40484 -31.91393 -31.64282 -31.48902 -28.45496 -28.12011 -26.25965 -25.23885 -24.16367 -22.56026 -21.98706 -20.58457 -20.25488 -19.68001 -18.14700 -17.79914 -17.00727 -16.79229 -16.78216 -16.39632 -16.16803 -15.56734 -15.14892 -15.00564 -14.68719 -14.52633 -14.29054 -14.07090 -13.80377 -13.60976 -13.34063 -13.22804 -12.87602 -12.78214 -12.66044 -12.38626 -12.22098 -12.01449 -11.78620 -11.53374 -11.44427 -11.21072 -11.06777 -10.88737 -10.82935 -10.59067 -10.07728 -10.05014 -9.97519 -9.82722 -9.53916 -9.37447 -9.27718 -8.61397 -8.57372 -6.10945 -4.09758 1.83954 2.41031 2.68064 2.81081 3.24980 3.33387 3.35751 3.52130 3.92037 4.20853 4.38804 4.41355 4.48525 4.61277 4.72418 4.78623 4.95277 4.97592 5.02036 5.03092 5.09106 5.12050 5.16475 5.23184 5.30566 5.36040 5.39395 5.54694 5.57490 5.62168 5.70243 5.75502 6.02724 6.05605 6.20678 6.35741 6.47822 6.75012 6.80768 7.02882 7.17155 7.28416 7.31084 7.51523 7.52238 7.71661 8.13444 8.45899 8.93439 9.51405 11.02418 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.015380 B = 0.003213 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.135189 B = 8712.761035 C = 9964.376231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.313 6.313 3 C 0.460 3.540 4 O -0.513 6.513 5 C 0.194 3.806 6 N -0.730 5.730 7 C 0.524 3.476 8 O -0.494 6.494 9 C 0.079 3.921 10 H 0.099 0.901 11 N -0.828 5.828 12 C -0.150 4.150 13 C -0.101 4.101 14 C -0.013 4.013 15 C -0.523 4.523 16 H 0.071 0.929 17 C 0.066 3.934 18 N -0.903 5.903 19 Si 0.880 3.120 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.266 1.266 23 C -0.150 4.150 24 C 0.062 3.938 25 O -0.377 6.377 26 C 0.066 3.934 27 C -0.165 4.165 28 H 0.101 0.899 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.406 0.594 32 H 0.349 0.651 33 H 0.353 0.647 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.014 0.986 39 H 0.010 0.990 40 H 0.263 0.737 41 H 0.087 0.913 42 H 0.102 0.898 43 H 0.057 0.943 44 H 0.105 0.895 45 H 0.102 0.898 46 H 0.059 0.941 47 H 0.106 0.894 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.592 17.356 -5.636 24.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.226 6.226 3 C 0.302 3.698 4 O -0.401 6.401 5 C 0.105 3.895 6 N -0.387 5.387 7 C 0.311 3.689 8 O -0.366 6.366 9 C -0.036 4.036 10 H 0.117 0.883 11 N -0.360 5.360 12 C -0.190 4.190 13 C -0.139 4.139 14 C -0.050 4.050 15 C -0.561 4.561 16 H 0.090 0.910 17 C -0.135 4.135 18 N -0.541 5.541 19 Si 0.707 3.293 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.191 1.191 23 C -0.188 4.188 24 C -0.015 4.015 25 O -0.296 6.296 26 C -0.010 4.010 27 C -0.204 4.204 28 H 0.120 0.880 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.242 0.758 32 H 0.163 0.837 33 H 0.168 0.832 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.032 0.968 39 H 0.029 0.971 40 H 0.073 0.927 41 H 0.106 0.894 42 H 0.121 0.879 43 H 0.075 0.925 44 H 0.123 0.877 45 H 0.120 0.880 46 H 0.078 0.922 47 H 0.125 0.875 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -16.731 17.884 -6.168 25.255 hybrid contribution 1.397 -0.129 -0.317 1.438 sum -15.335 17.755 -6.485 24.340 Atomic orbital electron populations 1.23273 0.77457 1.03743 1.01760 1.86938 1.22257 1.31194 1.82236 1.23990 0.91674 0.82094 0.72067 1.90659 1.66729 1.36714 1.45981 1.20077 0.86040 0.88753 0.94611 1.46158 1.55129 1.04928 1.32489 1.20740 0.79588 0.83083 0.85538 1.90664 1.35345 1.83682 1.26953 1.21383 0.92175 0.90324 0.99739 0.88297 1.58654 1.58836 1.06067 1.12442 1.22465 0.93868 1.01348 1.01344 1.21479 0.98276 0.96213 0.97915 1.19551 0.91705 0.96770 0.96959 1.21134 0.96835 1.20857 1.17293 0.91043 1.25043 0.97887 0.94718 0.95844 1.69913 1.14362 1.30959 1.38905 0.86779 0.80251 0.79327 0.82904 1.20282 1.21349 1.19093 1.22439 0.98369 0.95038 1.02951 1.22614 0.91772 1.03086 0.84039 1.87973 1.79206 1.36861 1.25545 1.22562 0.92660 0.86431 0.99382 1.22643 0.98043 1.05896 0.93783 0.88030 0.92427 0.92293 0.75838 0.83734 0.83210 0.91664 0.91702 0.92440 0.92688 0.96751 0.97127 0.92681 0.89395 0.87916 0.92510 0.87711 0.88010 0.92233 0.87529 0.89681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.56 101.05 1.07 1.39 16 2 O -0.31 -4.05 6.72 -47.35 -0.32 -4.37 16 3 C 0.46 5.72 6.72 36.00 0.24 5.96 16 4 O -0.51 -7.14 15.79 -18.75 -0.30 -7.43 16 5 C 0.19 1.93 0.64 -132.78 -0.08 1.85 16 6 N -0.73 -6.87 4.22 -48.50 -0.20 -7.08 16 7 C 0.52 6.22 6.02 -10.98 -0.07 6.16 16 8 O -0.49 -7.08 11.51 -18.97 -0.22 -7.29 16 9 C 0.08 0.93 3.21 -68.87 -0.22 0.71 16 10 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 11 N -0.83 -10.16 8.94 -5.65 -0.05 -10.22 16 12 C -0.15 -2.00 4.84 -26.73 -0.13 -2.13 16 13 C -0.10 -1.73 4.92 -26.73 -0.13 -1.86 16 14 C -0.01 -0.28 4.04 -27.88 -0.11 -0.39 16 15 C -0.52 -14.35 9.66 -34.44 -0.33 -14.68 16 16 H 0.07 2.10 7.99 -52.49 -0.42 1.68 16 17 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 18 N -0.90 -27.31 13.96 55.43 0.77 -26.54 16 19 Si 0.88 21.19 27.47 -169.99 -4.67 16.52 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 22 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 23 C -0.15 -1.19 4.56 -26.59 -0.12 -1.31 16 24 C 0.06 0.46 6.67 37.20 0.25 0.70 16 25 O -0.38 -3.75 10.77 -35.23 -0.38 -4.13 16 26 C 0.07 0.62 6.68 37.20 0.25 0.87 16 27 C -0.17 -1.66 4.75 -26.59 -0.13 -1.79 16 28 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 30 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 31 H 0.41 2.92 7.52 -40.82 -0.31 2.61 16 32 H 0.35 4.40 8.58 -39.29 -0.34 4.06 16 33 H 0.35 4.17 7.55 -39.29 -0.30 3.87 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.05 0.93 6.87 -51.93 -0.36 0.57 16 38 H 0.01 0.32 7.20 -51.93 -0.37 -0.05 16 39 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 40 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 41 H 0.09 0.59 8.14 -51.92 -0.42 0.17 16 42 H 0.10 0.90 7.77 -51.93 -0.40 0.49 16 43 H 0.06 0.37 7.09 -51.93 -0.37 0.00 16 44 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 46 H 0.06 0.58 7.75 -51.93 -0.40 0.18 16 47 H 0.11 1.24 6.14 -51.93 -0.32 0.93 16 48 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 378.73 15.07 5.71 5.71 Total: -1.00 -33.64 378.73 -7.07 -40.71 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -7.79 Total: 6.85 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: 0.38 Total: -2.73 kcal Atomic # 7 Polarization: -44.35 SS G_CDS: 0.52 Total: -43.83 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: -1.21 Total: -23.22 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.67 Total: 16.52 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.64 -7.07 -40.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578781926.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.659 kcal (2) G-P(sol) polarization free energy of solvation -33.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds