Wall clock time and date at job start Tue Mar 31 2020 16:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34223 * 117.00264 * 2 1 4 4 O 1.20832 * 120.00239 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00053 * 179.97438 * 3 2 1 6 6 N 1.46499 * 109.62041 * 325.22129 * 5 3 2 7 7 C 1.34781 * 119.99830 * 59.77560 * 6 5 3 8 8 O 1.21292 * 119.99906 * 0.02562 * 7 6 5 9 9 C 1.50701 * 120.00366 * 180.02562 * 7 6 5 10 10 H 1.09004 * 109.46845 * 39.99830 * 9 7 6 11 11 N 1.46900 * 109.47073 * 159.99838 * 9 7 6 12 12 C 1.52998 * 109.46728 * 280.00074 * 9 7 6 13 13 C 1.53010 * 109.46799 * 174.99791 * 12 9 7 14 14 C 1.52998 * 109.46799 * 179.97438 * 13 12 9 15 15 C 1.50701 * 109.46604 * 179.97438 * 14 13 12 16 16 H 1.08002 * 120.00426 * 359.97438 * 15 14 13 17 17 C 1.37875 * 119.99970 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00336 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 120.00088 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47525 * 89.99378 * 19 17 15 21 21 H 1.48498 * 109.47352 * 210.00042 * 19 17 15 22 22 H 1.48505 * 109.47091 * 329.99640 * 19 17 15 23 23 C 1.53181 * 109.54569 * 204.99667 * 5 3 2 24 24 C 1.53090 * 109.16481 * 183.15083 * 23 5 3 25 25 O 1.42905 * 109.41466 * 57.61337 * 24 23 5 26 26 C 1.42905 * 114.09831 * 298.84306 * 25 24 23 27 27 C 1.53087 * 109.41504 * 61.15479 * 26 25 24 28 28 H 1.09002 * 109.47227 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46854 * 300.00623 * 1 2 3 30 30 H 1.09002 * 109.46618 * 59.99964 * 1 2 3 31 31 H 0.97001 * 120.00699 * 239.77997 * 6 5 3 32 32 H 1.00903 * 110.99451 * 60.00413 * 11 9 7 33 33 H 1.00902 * 110.99486 * 183.95533 * 11 9 7 34 34 H 1.08999 * 109.47248 * 294.99433 * 12 9 7 35 35 H 1.08997 * 109.47141 * 55.00300 * 12 9 7 36 36 H 1.08999 * 109.46929 * 299.99839 * 13 12 9 37 37 H 1.08997 * 109.47080 * 59.99831 * 13 12 9 38 38 H 1.08999 * 109.47248 * 299.99643 * 14 13 12 39 39 H 1.08997 * 109.47141 * 60.00509 * 14 13 12 40 40 H 0.97003 * 120.00258 * 180.02562 * 18 17 15 41 41 H 1.09007 * 109.52008 * 63.25173 * 23 5 3 42 42 H 1.08996 * 109.52389 * 303.06046 * 23 5 3 43 43 H 1.08998 * 109.48371 * 297.63244 * 24 23 5 44 44 H 1.09005 * 109.49161 * 177.59641 * 24 23 5 45 45 H 1.08994 * 109.48072 * 181.14100 * 26 25 24 46 46 H 1.09001 * 109.47741 * 301.17313 * 26 25 24 47 47 H 1.09001 * 109.52122 * 182.48887 * 27 26 25 48 48 H 1.08996 * 109.52817 * 62.29974 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2747 0.0006 6 7 4.1165 0.1687 0.7881 7 6 3.8558 -1.1054 0.4345 8 8 3.1660 -1.3364 -0.5361 9 6 4.4212 -2.2432 1.2449 10 1 4.3651 -1.9970 2.3053 11 7 3.6457 -3.4632 0.9837 12 6 5.8817 -2.4731 0.8513 13 6 6.4922 -3.5429 1.7591 14 6 7.9525 -3.7732 1.3651 15 6 8.5540 -4.8264 2.2596 16 1 7.9547 -5.2852 3.0322 17 6 9.8693 -5.2042 2.0918 18 7 10.3941 -6.1237 2.8721 19 14 10.9060 -4.4103 0.7560 20 1 11.5812 -3.2062 1.3034 21 1 11.9276 -5.3779 0.2815 22 1 10.0334 -4.0155 -0.3789 23 6 4.0094 2.6082 0.6105 24 6 5.5349 2.7131 0.5350 25 8 5.9526 2.5928 -0.8263 26 6 5.6072 1.3466 -1.4346 27 6 4.0847 1.1868 -1.4382 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 4.6685 0.3533 1.5642 32 1 3.6822 -3.7125 0.0067 33 1 3.9643 -4.2251 1.5635 34 1 5.9306 -2.8055 -0.1856 35 1 6.4384 -1.5425 0.9612 36 1 6.4434 -3.2104 2.7960 37 1 5.9355 -4.4735 1.6493 38 1 8.0010 -4.1058 0.3282 39 1 8.5095 -2.8427 1.4746 40 1 11.3195 -6.3893 2.7542 41 1 3.6922 2.6555 1.6523 42 1 3.5598 3.4305 0.0541 43 1 5.9839 1.9141 1.1249 44 1 5.8530 3.6785 0.9288 45 1 5.9771 1.3276 -2.4597 46 1 6.0571 0.5297 -0.8704 47 1 3.8212 0.2176 -1.8617 48 1 3.6364 1.9804 -2.0360 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001578781926.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:00:43 Heat of formation + Delta-G solvation = -197.984886 kcal Electronic energy + Delta-G solvation = -30042.600021 eV Core-core repulsion = 25903.445540 eV Total energy + Delta-G solvation = -4139.154482 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.47531 -40.72503 -39.81960 -37.60546 -37.42922 -36.18104 -35.17593 -33.24643 -32.68595 -32.28769 -29.69362 -29.10832 -27.30072 -26.33498 -24.84528 -24.00074 -22.79960 -21.89076 -21.38195 -20.52329 -19.02956 -18.86848 -18.69847 -17.87876 -17.65071 -17.15620 -16.93660 -16.42090 -16.33128 -16.11617 -15.97820 -15.52792 -15.36999 -15.03891 -14.89650 -14.67968 -14.40750 -14.27331 -14.05896 -13.85656 -13.62723 -13.55280 -13.43970 -13.01940 -12.97625 -12.62849 -12.46570 -12.28608 -12.18366 -11.97596 -11.79468 -11.78173 -11.63768 -11.41629 -11.35952 -11.29691 -10.74909 -10.73987 -10.58812 -10.21104 -9.58424 -8.27827 -6.31624 0.91729 1.36747 1.39196 1.50103 1.54978 1.79964 1.97669 2.37124 2.89536 3.08204 3.19839 3.45619 3.63340 3.72153 3.76614 3.82556 4.04800 4.12717 4.16322 4.19172 4.25375 4.29235 4.29444 4.42639 4.53331 4.56703 4.62323 4.64254 4.74646 4.78461 4.89496 4.94552 4.99646 5.01309 5.10819 5.15118 5.24164 5.32303 5.55489 5.63108 5.69607 6.11948 6.16788 6.30487 6.47974 6.54508 6.60402 6.77816 7.26647 7.33543 8.88921 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.015380 B = 0.003213 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.135189 B = 8712.761035 C = 9964.376231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.328 6.328 3 C 0.456 3.544 4 O -0.533 6.533 5 C 0.194 3.806 6 N -0.716 5.716 7 C 0.526 3.474 8 O -0.520 6.520 9 C 0.086 3.914 10 H 0.115 0.885 11 N -0.832 5.832 12 C -0.136 4.136 13 C -0.093 4.093 14 C -0.012 4.012 15 C -0.531 4.531 16 H 0.033 0.967 17 C 0.002 3.998 18 N -0.953 5.953 19 Si 0.949 3.051 20 H -0.265 1.265 21 H -0.289 1.289 22 H -0.247 1.247 23 C -0.143 4.143 24 C 0.059 3.941 25 O -0.392 6.392 26 C 0.070 3.930 27 C -0.160 4.160 28 H 0.115 0.885 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.419 0.581 32 H 0.347 0.653 33 H 0.354 0.646 34 H 0.059 0.941 35 H 0.081 0.919 36 H 0.059 0.941 37 H 0.050 0.950 38 H 0.014 0.986 39 H 0.021 0.979 40 H 0.265 0.735 41 H 0.103 0.897 42 H 0.094 0.906 43 H 0.070 0.930 44 H 0.124 0.876 45 H 0.109 0.891 46 H 0.059 0.941 47 H 0.090 0.910 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.385 19.335 -6.227 25.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.242 6.242 3 C 0.299 3.701 4 O -0.423 6.423 5 C 0.105 3.895 6 N -0.374 5.374 7 C 0.312 3.688 8 O -0.394 6.394 9 C -0.030 4.030 10 H 0.132 0.868 11 N -0.364 5.364 12 C -0.176 4.176 13 C -0.131 4.131 14 C -0.050 4.050 15 C -0.569 4.569 16 H 0.052 0.948 17 C -0.195 4.195 18 N -0.594 5.594 19 Si 0.773 3.227 20 H -0.190 1.190 21 H -0.215 1.215 22 H -0.170 1.170 23 C -0.181 4.181 24 C -0.018 4.018 25 O -0.311 6.311 26 C -0.007 4.007 27 C -0.199 4.199 28 H 0.134 0.866 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.257 0.743 32 H 0.160 0.840 33 H 0.169 0.831 34 H 0.078 0.922 35 H 0.100 0.900 36 H 0.077 0.923 37 H 0.069 0.931 38 H 0.032 0.968 39 H 0.039 0.961 40 H 0.074 0.926 41 H 0.121 0.879 42 H 0.112 0.888 43 H 0.088 0.912 44 H 0.142 0.858 45 H 0.127 0.873 46 H 0.077 0.923 47 H 0.108 0.892 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -16.535 19.885 -6.738 26.725 hybrid contribution 1.235 -0.797 -0.058 1.471 sum -15.301 19.087 -6.797 25.390 Atomic orbital electron populations 1.23447 0.76361 1.04832 1.02098 1.86929 1.23588 1.31598 1.82102 1.24483 0.92614 0.81674 0.71347 1.90642 1.67406 1.37213 1.47026 1.20178 0.84590 0.89787 0.94906 1.45993 1.54630 1.04090 1.32649 1.20710 0.79324 0.83686 0.85061 1.90667 1.36569 1.84143 1.27973 1.21345 0.90909 0.90166 1.00557 0.86754 1.58662 1.59005 1.06415 1.12353 1.22277 0.94863 1.00588 0.99894 1.21322 0.95342 0.97584 0.98860 1.19530 0.94659 0.95209 0.95563 1.21563 0.96722 1.21627 1.16993 0.94845 1.26039 0.99573 0.95376 0.98507 1.70076 1.14939 1.33105 1.41323 0.85670 0.78419 0.78470 0.80139 1.18973 1.21470 1.17024 1.22435 0.98876 0.93298 1.03506 1.22825 0.91099 1.04724 0.83131 1.87961 1.79342 1.36924 1.26871 1.22544 0.91807 0.86391 0.99930 1.22566 0.98755 1.04816 0.93728 0.86630 0.91888 0.92181 0.74259 0.83978 0.83056 0.92203 0.89998 0.92258 0.93092 0.96795 0.96110 0.92627 0.87872 0.88763 0.91206 0.85796 0.87323 0.92306 0.89201 0.89910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.56 113.37 1.20 1.70 16 2 O -0.33 -8.22 6.72 -43.59 -0.29 -8.51 16 3 C 0.46 10.87 6.72 71.24 0.48 11.35 16 4 O -0.53 -14.44 15.79 21.95 0.35 -14.09 16 5 C 0.19 3.54 0.64 2.98 0.00 3.54 16 6 N -0.72 -11.73 4.22 -425.75 -1.80 -13.53 16 7 C 0.53 11.41 6.02 87.66 0.53 11.94 16 8 O -0.52 -14.23 11.51 20.37 0.23 -14.00 16 9 C 0.09 1.80 3.21 44.17 0.14 1.94 16 10 H 0.11 2.09 8.14 -2.38 -0.02 2.07 16 11 N -0.83 -19.22 8.94 -171.80 -1.54 -20.75 16 12 C -0.14 -3.26 4.84 30.60 0.15 -3.12 16 13 C -0.09 -3.02 4.92 30.60 0.15 -2.87 16 14 C -0.01 -0.52 4.04 29.85 0.12 -0.40 16 15 C -0.53 -29.31 9.66 25.60 0.25 -29.06 16 16 H 0.03 2.03 7.99 -2.91 -0.02 2.01 16 17 C 0.00 0.09 5.47 84.65 0.46 0.55 16 18 N -0.95 -58.89 13.96 21.45 0.30 -58.59 16 19 Si 0.95 42.94 27.47 68.60 1.88 44.82 16 20 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 21 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 22 H -0.25 -10.29 6.54 99.48 0.65 -9.64 16 23 C -0.14 -1.94 4.56 30.68 0.14 -1.80 16 24 C 0.06 0.69 6.67 72.01 0.48 1.17 16 25 O -0.39 -6.83 10.77 -148.98 -1.60 -8.43 16 26 C 0.07 1.18 6.68 72.01 0.48 1.66 16 27 C -0.16 -3.02 4.75 30.69 0.15 -2.88 16 28 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.06 1.13 8.13 -2.39 -0.02 1.11 16 30 H 0.06 1.12 8.13 -2.39 -0.02 1.10 16 31 H 0.42 4.62 7.52 -92.71 -0.70 3.92 16 32 H 0.35 8.35 8.58 -89.69 -0.77 7.58 16 33 H 0.35 7.94 7.55 -89.69 -0.68 7.26 16 34 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.06 1.89 8.14 -2.39 -0.02 1.88 16 37 H 0.05 1.68 6.87 -2.39 -0.02 1.66 16 38 H 0.01 0.59 7.20 -2.39 -0.02 0.58 16 39 H 0.02 0.85 7.57 -2.39 -0.02 0.83 16 40 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 41 H 0.10 1.09 8.14 -2.38 -0.02 1.07 16 42 H 0.09 1.49 7.77 -2.39 -0.02 1.47 16 43 H 0.07 0.65 7.09 -2.39 -0.02 0.63 16 44 H 0.12 1.00 8.14 -2.38 -0.02 0.98 16 45 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 46 H 0.06 0.99 7.75 -2.39 -0.02 0.97 16 47 H 0.09 2.04 6.14 -2.39 -0.01 2.02 16 48 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -73.18 378.73 1.05 -72.13 By element: Atomic # 1 Polarization: 28.45 SS G_CDS: -1.21 Total: 27.24 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: 4.72 Total: -6.29 kcal Atomic # 7 Polarization: -89.84 SS G_CDS: -3.03 Total: -92.87 kcal Atomic # 8 Polarization: -43.71 SS G_CDS: -1.32 Total: -45.03 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 1.88 Total: 44.82 kcal Total: -73.18 1.05 -72.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578781926.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.858 kcal (2) G-P(sol) polarization free energy of solvation -73.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds