Wall clock time and date at job start Tue Mar 31 2020 15:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42897 * 113.99856 * 2 1 4 4 C 1.52999 * 109.47260 * 179.97438 * 3 2 1 5 5 C 1.50710 * 110.28578 * 299.32377 * 4 3 2 6 6 O 1.20822 * 119.99879 * 240.67216 * 5 4 3 7 7 O 1.34225 * 119.99637 * 60.67225 * 5 4 3 8 8 C 1.54257 * 110.32656 * 61.45036 * 4 3 2 9 9 C 1.54383 * 105.05908 * 118.99834 * 8 4 3 10 10 N 1.48556 * 104.59676 * 336.14714 * 9 8 4 11 11 C 1.46901 * 111.00065 * 159.03506 * 10 9 8 12 12 H 1.09004 * 109.47252 * 299.88116 * 11 10 9 13 13 C 1.53002 * 109.47246 * 179.87709 * 11 10 9 14 14 C 1.50700 * 109.46589 * 59.87588 * 11 10 9 15 15 O 1.21280 * 120.00175 * 19.94264 * 14 11 10 16 16 N 1.34774 * 120.00088 * 199.66354 * 14 11 10 17 17 C 1.46502 * 119.99814 * 354.92693 * 16 14 11 18 18 C 1.46505 * 120.00410 * 174.93335 * 16 14 11 19 19 C 1.50696 * 109.47553 * 89.99626 * 18 16 14 20 20 H 1.08000 * 119.99697 * 0.02562 * 19 18 16 21 21 C 1.37879 * 120.00283 * 180.02562 * 19 18 16 22 22 N 1.31518 * 119.99693 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00209 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.46731 * 60.00100 * 23 21 19 25 25 H 1.48502 * 109.46688 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47185 * 300.00348 * 23 21 19 27 27 C 1.48561 * 104.21786 * 39.48602 * 10 9 8 28 28 H 1.09000 * 109.47543 * 60.00369 * 1 2 3 29 29 H 1.09002 * 109.46956 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47362 * 300.00154 * 1 2 3 31 31 H 1.09001 * 109.47455 * 59.99446 * 3 2 1 32 32 H 1.08997 * 109.47294 * 299.99877 * 3 2 1 33 33 H 0.96701 * 116.99912 * 179.97438 * 7 5 4 34 34 H 1.08999 * 110.31910 * 0.10485 * 8 4 3 35 35 H 1.08995 * 110.41418 * 237.94223 * 8 4 3 36 36 H 1.09001 * 110.41236 * 217.36864 * 9 8 4 37 37 H 1.09004 * 110.40620 * 94.93126 * 9 8 4 38 38 H 1.08994 * 109.46596 * 187.47918 * 13 11 10 39 39 H 1.09000 * 109.46761 * 307.47734 * 13 11 10 40 40 H 1.08993 * 109.47059 * 67.48030 * 13 11 10 41 41 H 1.09001 * 109.47292 * 89.95442 * 17 16 14 42 42 H 1.09007 * 109.46992 * 209.95246 * 17 16 14 43 43 H 1.08999 * 109.47223 * 329.94985 * 17 16 14 44 44 H 1.08997 * 109.46874 * 210.00112 * 18 16 14 45 45 H 1.09001 * 109.46223 * 329.99210 * 18 16 14 46 46 H 0.96992 * 120.00155 * 180.02562 * 22 21 19 47 47 H 1.09000 * 110.41542 * 79.29765 * 27 10 9 48 48 H 1.09008 * 110.40904 * 201.73882 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.0011 0.4535 1.2335 6 8 4.7365 1.0022 2.0195 7 8 3.5989 -0.8072 1.4581 8 6 4.0155 0.4530 -1.2696 9 6 4.9160 1.4706 -2.0025 10 7 4.4545 2.7966 -1.5170 11 6 5.4905 3.8192 -1.7143 12 1 6.3874 3.5393 -1.1616 13 6 4.9786 5.1686 -1.2062 14 6 5.8177 3.9261 -3.1815 15 8 5.0327 3.5147 -4.0094 16 7 6.9801 4.4839 -3.5738 17 6 7.8749 5.0863 -2.5825 18 6 7.3489 4.4882 -4.9917 19 6 6.8195 5.7388 -5.6448 20 1 6.2642 6.4587 -5.0619 21 6 7.0440 5.9640 -6.9864 22 7 7.7198 5.0870 -7.6963 23 14 6.3871 7.5139 -7.7962 24 1 6.9706 8.7058 -7.1298 25 1 6.7601 7.5174 -9.2336 26 1 4.9080 7.5501 -7.6689 27 6 4.1862 2.5827 -0.0715 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.6884 1.8464 0.8899 32 1 1.6885 1.8464 -0.8900 33 1 3.9241 -1.2351 2.2619 34 1 3.1647 0.1816 -1.8945 35 1 4.5875 -0.4357 -1.0032 36 1 4.7789 1.3920 -3.0810 37 1 5.9616 1.3119 -1.7387 38 1 5.6902 5.9503 -1.4717 39 1 4.0129 5.3859 -1.6626 40 1 4.8681 5.1306 -0.1226 41 1 8.5707 4.3319 -2.2152 42 1 8.4328 5.9011 -3.0441 43 1 7.2870 5.4741 -1.7506 44 1 8.4346 4.4613 -5.0848 45 1 6.9206 3.6134 -5.4810 46 1 7.8781 5.2455 -8.6400 47 1 5.1176 2.5982 0.4944 48 1 3.4995 3.3415 0.3040 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001593968835.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:42 Heat of formation + Delta-G solvation = -149.435640 kcal Electronic energy + Delta-G solvation = -29774.095655 eV Core-core repulsion = 25637.046427 eV Total energy + Delta-G solvation = -4137.049228 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.13711 -39.60218 -38.41063 -37.45467 -36.24971 -34.77092 -33.93245 -32.52010 -30.74652 -28.97956 -27.60526 -27.26687 -26.00264 -25.12471 -24.56125 -23.37837 -22.14345 -21.20739 -19.83457 -18.52827 -18.03736 -17.22944 -16.81892 -16.49023 -16.30520 -16.27644 -15.80581 -15.41200 -15.08904 -14.61969 -14.58391 -14.21757 -14.03933 -13.93037 -13.30852 -13.18974 -13.00168 -12.67099 -12.37141 -12.25461 -12.21386 -12.05715 -11.90814 -11.70786 -11.62014 -11.53130 -11.38028 -11.24209 -11.19560 -11.01739 -10.96695 -10.85288 -10.54800 -10.52454 -10.13296 -9.87641 -9.61659 -8.82493 -8.41577 -8.40043 -7.61357 -6.02411 -4.06840 1.95451 2.71277 3.33246 3.36033 3.37685 3.38800 3.44710 3.72381 4.11656 4.20544 4.41550 4.47561 4.64314 4.90516 5.00651 5.05795 5.11415 5.15378 5.17752 5.23690 5.26080 5.31227 5.32648 5.40733 5.44690 5.54102 5.56069 5.61729 5.71200 5.81255 5.84157 5.92167 6.00032 6.15203 6.17730 6.26867 6.37465 6.76302 6.84092 6.86163 7.11346 7.43488 7.56324 7.69977 7.94049 8.25290 8.43482 8.92588 9.13095 9.58117 11.05690 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.020180 B = 0.002846 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.207363 B = 9835.949886 C =10325.511461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.377 6.377 3 C 0.079 3.921 4 C -0.052 4.052 5 C 0.496 3.504 6 O -0.519 6.519 7 O -0.494 6.494 8 C -0.100 4.100 9 C 0.028 3.972 10 N -0.481 5.481 11 C 0.054 3.946 12 H 0.060 0.940 13 C -0.142 4.142 14 C 0.509 3.491 15 O -0.519 6.519 16 N -0.604 5.604 17 C 0.077 3.923 18 C 0.248 3.752 19 C -0.524 4.524 20 H 0.057 0.943 21 C 0.061 3.939 22 N -0.896 5.896 23 Si 0.898 3.102 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.276 1.276 27 C 0.049 3.951 28 H 0.043 0.957 29 H 0.086 0.914 30 H 0.038 0.962 31 H 0.052 0.948 32 H 0.079 0.921 33 H 0.404 0.596 34 H 0.094 0.906 35 H 0.076 0.924 36 H 0.105 0.895 37 H 0.042 0.958 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.060 0.940 41 H 0.042 0.958 42 H 0.075 0.925 43 H 0.061 0.939 44 H 0.031 0.969 45 H 0.041 0.959 46 H 0.263 0.737 47 H 0.070 0.930 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.841 -9.067 20.253 23.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.295 6.295 3 C 0.002 3.998 4 C -0.054 4.054 5 C 0.338 3.662 6 O -0.408 6.408 7 O -0.303 6.303 8 C -0.138 4.138 9 C -0.100 4.100 10 N -0.206 5.206 11 C -0.058 4.058 12 H 0.078 0.922 13 C -0.200 4.200 14 C 0.294 3.706 15 O -0.394 6.394 16 N -0.337 5.337 17 C -0.067 4.067 18 C 0.129 3.871 19 C -0.563 4.563 20 H 0.075 0.925 21 C -0.141 4.141 22 N -0.536 5.536 23 Si 0.726 3.274 24 H -0.203 1.203 25 H -0.212 1.212 26 H -0.201 1.201 27 C -0.079 4.079 28 H 0.062 0.938 29 H 0.104 0.896 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.097 0.903 33 H 0.262 0.738 34 H 0.112 0.888 35 H 0.094 0.906 36 H 0.124 0.876 37 H 0.061 0.939 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.079 0.921 41 H 0.060 0.940 42 H 0.094 0.906 43 H 0.080 0.920 44 H 0.049 0.951 45 H 0.059 0.941 46 H 0.073 0.927 47 H 0.088 0.912 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.473 -8.949 19.144 23.158 hybrid contribution 0.582 0.637 0.579 1.039 sum -8.891 -8.312 19.722 23.176 Atomic orbital electron populations 1.22736 0.80958 1.02780 0.99981 1.87969 1.19493 1.26635 1.95411 1.22456 0.89766 0.85668 1.01886 1.21242 0.96178 0.95899 0.92106 1.23085 0.76568 0.79949 0.86572 1.90709 1.34945 1.67953 1.47170 1.84660 1.69847 1.28103 1.47735 1.22333 1.00795 0.97366 0.93319 1.23295 0.96522 0.87597 1.02582 1.65327 1.39033 1.05081 1.11139 1.21872 0.93670 0.94457 0.95790 0.92229 1.21825 1.03048 0.94490 1.00625 1.19980 0.81955 0.79340 0.89298 1.90668 1.46720 1.48301 1.53755 1.48150 1.19022 1.56340 1.10182 1.21781 0.94239 0.98274 0.92455 1.19259 0.95646 0.98254 0.73919 1.21389 1.34965 1.05424 0.94493 0.92508 1.24935 0.95172 0.96964 0.97059 1.69920 1.40380 1.35240 1.08015 0.86560 0.79575 0.83117 0.78182 1.20291 1.21215 1.20144 1.23103 1.00954 0.92948 0.90938 0.93813 0.89552 0.94344 0.93008 0.90272 0.73826 0.88766 0.90580 0.87648 0.93927 0.90964 0.90790 0.92098 0.93978 0.90649 0.92035 0.95078 0.94053 0.92693 0.91169 0.88872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.38 -3.85 9.07 -50.69 -0.46 -4.31 16 3 C 0.08 0.78 4.54 37.16 0.17 0.95 16 4 C -0.05 -0.58 0.78 -154.27 -0.12 -0.70 16 5 C 0.50 5.57 6.74 36.01 0.24 5.81 16 6 O -0.52 -6.99 16.21 -18.75 -0.30 -7.29 16 7 O -0.49 -4.46 12.30 -44.80 -0.55 -5.01 16 8 C -0.10 -1.17 6.05 -25.35 -0.15 -1.33 16 9 C 0.03 0.40 5.59 -2.18 -0.01 0.38 16 10 N -0.48 -6.98 4.91 -223.40 -1.10 -8.08 16 11 C 0.05 0.83 1.42 -68.86 -0.10 0.74 16 12 H 0.06 0.83 7.28 -51.93 -0.38 0.46 16 13 C -0.14 -1.88 8.63 37.16 0.32 -1.56 16 14 C 0.51 10.51 6.27 -10.99 -0.07 10.44 16 15 O -0.52 -12.92 14.77 5.56 0.08 -12.84 16 16 N -0.60 -12.77 2.86 -182.95 -0.52 -13.30 16 17 C 0.08 1.22 9.81 59.85 0.59 1.81 16 18 C 0.25 6.50 5.12 -5.19 -0.03 6.47 16 19 C -0.52 -14.90 9.39 -34.44 -0.32 -15.22 16 20 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 21 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 22 N -0.90 -26.73 13.29 55.43 0.74 -26.00 16 23 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 26 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 27 C 0.05 0.57 4.44 -2.18 -0.01 0.56 16 28 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.40 1.87 9.10 45.56 0.41 2.29 16 34 H 0.09 1.11 7.52 -51.93 -0.39 0.72 16 35 H 0.08 0.83 7.69 -51.93 -0.40 0.43 16 36 H 0.11 1.79 6.96 -51.93 -0.36 1.43 16 37 H 0.04 0.60 7.97 -51.93 -0.41 0.19 16 38 H 0.07 0.95 6.04 -51.93 -0.31 0.63 16 39 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.06 0.64 7.45 -51.93 -0.39 0.25 16 41 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 43 H 0.06 0.81 4.67 -51.93 -0.24 0.57 16 44 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 45 H 0.04 1.21 7.50 -51.93 -0.39 0.83 16 46 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 47 H 0.07 0.87 6.70 -51.93 -0.35 0.52 16 48 H 0.09 0.97 7.60 -51.92 -0.39 0.58 16 LS Contribution 385.25 15.07 5.81 5.81 Total: -1.00 -35.58 385.25 -6.75 -42.33 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -6.95 Total: 0.39 kcal Atomic # 6 Polarization: 9.82 SS G_CDS: 1.52 Total: 11.34 kcal Atomic # 7 Polarization: -46.49 SS G_CDS: -0.88 Total: -47.37 kcal Atomic # 8 Polarization: -28.22 SS G_CDS: -1.23 Total: -29.46 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.58 -6.75 -42.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593968835.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.104 kcal (2) G-P(sol) polarization free energy of solvation -35.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds