Wall clock time and date at job start Tue Mar 31 2020 15:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42897 * 113.99856 * 2 1 4 4 C 1.52999 * 109.47260 * 179.97438 * 3 2 1 5 5 C 1.50710 * 110.28578 * 299.32377 * 4 3 2 6 6 O 1.20822 * 119.99879 * 240.67216 * 5 4 3 7 7 O 1.34225 * 119.99637 * 60.67225 * 5 4 3 8 8 C 1.54257 * 110.32656 * 61.45036 * 4 3 2 9 9 C 1.54383 * 105.05908 * 118.99834 * 8 4 3 10 10 N 1.48556 * 104.59676 * 336.14714 * 9 8 4 11 11 C 1.46901 * 111.00065 * 159.03506 * 10 9 8 12 12 H 1.09004 * 109.47252 * 299.88116 * 11 10 9 13 13 C 1.53002 * 109.47246 * 179.87709 * 11 10 9 14 14 C 1.50700 * 109.46589 * 59.87588 * 11 10 9 15 15 O 1.21280 * 120.00175 * 19.94264 * 14 11 10 16 16 N 1.34774 * 120.00088 * 199.66354 * 14 11 10 17 17 C 1.46502 * 119.99814 * 354.92693 * 16 14 11 18 18 C 1.46505 * 120.00410 * 174.93335 * 16 14 11 19 19 C 1.50696 * 109.47553 * 89.99626 * 18 16 14 20 20 H 1.08000 * 119.99697 * 0.02562 * 19 18 16 21 21 C 1.37879 * 120.00283 * 180.02562 * 19 18 16 22 22 N 1.31518 * 119.99693 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00209 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.46731 * 60.00100 * 23 21 19 25 25 H 1.48502 * 109.46688 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47185 * 300.00348 * 23 21 19 27 27 C 1.48561 * 104.21786 * 39.48602 * 10 9 8 28 28 H 1.09000 * 109.47543 * 60.00369 * 1 2 3 29 29 H 1.09002 * 109.46956 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47362 * 300.00154 * 1 2 3 31 31 H 1.09001 * 109.47455 * 59.99446 * 3 2 1 32 32 H 1.08997 * 109.47294 * 299.99877 * 3 2 1 33 33 H 0.96701 * 116.99912 * 179.97438 * 7 5 4 34 34 H 1.08999 * 110.31910 * 0.10485 * 8 4 3 35 35 H 1.08995 * 110.41418 * 237.94223 * 8 4 3 36 36 H 1.09001 * 110.41236 * 217.36864 * 9 8 4 37 37 H 1.09004 * 110.40620 * 94.93126 * 9 8 4 38 38 H 1.08994 * 109.46596 * 187.47918 * 13 11 10 39 39 H 1.09000 * 109.46761 * 307.47734 * 13 11 10 40 40 H 1.08993 * 109.47059 * 67.48030 * 13 11 10 41 41 H 1.09001 * 109.47292 * 89.95442 * 17 16 14 42 42 H 1.09007 * 109.46992 * 209.95246 * 17 16 14 43 43 H 1.08999 * 109.47223 * 329.94985 * 17 16 14 44 44 H 1.08997 * 109.46874 * 210.00112 * 18 16 14 45 45 H 1.09001 * 109.46223 * 329.99210 * 18 16 14 46 46 H 0.96992 * 120.00155 * 180.02562 * 22 21 19 47 47 H 1.09000 * 110.41542 * 79.29765 * 27 10 9 48 48 H 1.09008 * 110.40904 * 201.73882 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.0011 0.4535 1.2335 6 8 4.7365 1.0022 2.0195 7 8 3.5989 -0.8072 1.4581 8 6 4.0155 0.4530 -1.2696 9 6 4.9160 1.4706 -2.0025 10 7 4.4545 2.7966 -1.5170 11 6 5.4905 3.8192 -1.7143 12 1 6.3874 3.5393 -1.1616 13 6 4.9786 5.1686 -1.2062 14 6 5.8177 3.9261 -3.1815 15 8 5.0327 3.5147 -4.0094 16 7 6.9801 4.4839 -3.5738 17 6 7.8749 5.0863 -2.5825 18 6 7.3489 4.4882 -4.9917 19 6 6.8195 5.7388 -5.6448 20 1 6.2642 6.4587 -5.0619 21 6 7.0440 5.9640 -6.9864 22 7 7.7198 5.0870 -7.6963 23 14 6.3871 7.5139 -7.7962 24 1 6.9706 8.7058 -7.1298 25 1 6.7601 7.5174 -9.2336 26 1 4.9080 7.5501 -7.6689 27 6 4.1862 2.5827 -0.0715 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.6884 1.8464 0.8899 32 1 1.6885 1.8464 -0.8900 33 1 3.9241 -1.2351 2.2619 34 1 3.1647 0.1816 -1.8945 35 1 4.5875 -0.4357 -1.0032 36 1 4.7789 1.3920 -3.0810 37 1 5.9616 1.3119 -1.7387 38 1 5.6902 5.9503 -1.4717 39 1 4.0129 5.3859 -1.6626 40 1 4.8681 5.1306 -0.1226 41 1 8.5707 4.3319 -2.2152 42 1 8.4328 5.9011 -3.0441 43 1 7.2870 5.4741 -1.7506 44 1 8.4346 4.4613 -5.0848 45 1 6.9206 3.6134 -5.4810 46 1 7.8781 5.2455 -8.6400 47 1 5.1176 2.5982 0.4944 48 1 3.4995 3.3415 0.3040 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001593968835.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:41 Heat of formation + Delta-G solvation = -176.697751 kcal Electronic energy + Delta-G solvation = -29775.277829 eV Core-core repulsion = 25637.046427 eV Total energy + Delta-G solvation = -4138.231402 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.06833 -40.95158 -39.45144 -38.37850 -37.07117 -36.54155 -35.20079 -34.48084 -31.79842 -30.27289 -29.29987 -27.98776 -27.44808 -26.15244 -25.55984 -24.96945 -23.34895 -22.50113 -20.70952 -19.99994 -18.88246 -18.65927 -18.26687 -18.05030 -17.36996 -17.03465 -17.00422 -16.57884 -16.25155 -16.14788 -15.96897 -15.43740 -15.16500 -15.06647 -14.55803 -14.30089 -14.19572 -13.98175 -13.58781 -13.55508 -13.50313 -13.25407 -13.15409 -13.06487 -12.79003 -12.64654 -12.57177 -12.53875 -12.49041 -12.35968 -12.25642 -12.14865 -12.01923 -11.89192 -11.70570 -11.42068 -10.63554 -10.57419 -10.43183 -9.56255 -9.39015 -8.21413 -6.36007 1.10812 1.36779 1.41459 1.48540 1.81200 1.92058 2.27490 2.42608 2.65131 2.96078 3.07962 3.27315 3.45008 3.67221 3.85396 4.03006 4.05413 4.13996 4.19503 4.29489 4.35901 4.40213 4.50517 4.57074 4.60414 4.65453 4.67492 4.68886 4.73774 4.78659 4.82305 4.91635 4.93510 4.94051 5.01175 5.06950 5.21384 5.29249 5.55886 5.56639 5.68490 5.76031 5.88637 6.07182 6.20056 6.71133 6.80193 7.00091 7.29703 7.51363 8.85429 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.020180 B = 0.002846 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.207363 B = 9835.949886 C =10325.511461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.393 6.393 3 C 0.082 3.918 4 C -0.052 4.052 5 C 0.504 3.496 6 O -0.542 6.542 7 O -0.492 6.492 8 C -0.090 4.090 9 C 0.029 3.971 10 N -0.496 5.496 11 C 0.066 3.934 12 H 0.082 0.918 13 C -0.138 4.138 14 C 0.501 3.499 15 O -0.573 6.573 16 N -0.612 5.612 17 C 0.071 3.929 18 C 0.263 3.737 19 C -0.540 4.540 20 H 0.053 0.947 21 C 0.007 3.993 22 N -0.930 5.930 23 Si 0.967 3.033 24 H -0.259 1.259 25 H -0.279 1.279 26 H -0.278 1.278 27 C 0.054 3.946 28 H 0.044 0.956 29 H 0.097 0.903 30 H 0.050 0.950 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.424 0.576 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.068 0.932 37 H 0.043 0.957 38 H 0.074 0.926 39 H 0.058 0.942 40 H 0.097 0.903 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.095 0.905 44 H 0.023 0.977 45 H -0.005 1.005 46 H 0.267 0.733 47 H 0.071 0.929 48 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.545 -8.147 22.846 26.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.312 6.312 3 C 0.005 3.995 4 C -0.054 4.054 5 C 0.347 3.653 6 O -0.433 6.433 7 O -0.303 6.303 8 C -0.129 4.129 9 C -0.099 4.099 10 N -0.221 5.221 11 C -0.046 4.046 12 H 0.100 0.900 13 C -0.195 4.195 14 C 0.289 3.711 15 O -0.452 6.452 16 N -0.344 5.344 17 C -0.071 4.071 18 C 0.142 3.858 19 C -0.579 4.579 20 H 0.071 0.929 21 C -0.192 4.192 22 N -0.570 5.570 23 Si 0.791 3.209 24 H -0.184 1.184 25 H -0.204 1.204 26 H -0.204 1.204 27 C -0.074 4.074 28 H 0.063 0.937 29 H 0.115 0.885 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.285 0.715 34 H 0.108 0.892 35 H 0.103 0.897 36 H 0.086 0.914 37 H 0.061 0.939 38 H 0.093 0.907 39 H 0.077 0.923 40 H 0.116 0.884 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.113 0.887 44 H 0.041 0.959 45 H 0.014 0.986 46 H 0.076 0.924 47 H 0.089 0.911 48 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -10.162 -8.037 21.799 25.359 hybrid contribution 0.787 0.236 -0.213 0.849 sum -9.376 -7.801 21.586 24.793 Atomic orbital electron populations 1.22898 0.79581 1.03787 1.00651 1.87935 1.21029 1.26738 1.95543 1.22415 0.88861 0.85833 1.02350 1.21201 0.97093 0.95420 0.91648 1.22934 0.75944 0.80326 0.86077 1.90704 1.36031 1.68613 1.47983 1.84614 1.69524 1.27148 1.49043 1.22214 1.00163 0.96956 0.93520 1.23166 0.97197 0.88803 1.00767 1.65282 1.38774 1.04733 1.13299 1.21803 0.95100 0.96253 0.91449 0.90043 1.21844 1.02109 0.92817 1.02740 1.20999 0.80838 0.77738 0.91543 1.90636 1.48402 1.50316 1.55877 1.48168 1.20265 1.56881 1.09099 1.22066 0.94344 0.98697 0.91955 1.18713 0.94433 0.95671 0.76995 1.21663 1.35064 1.05987 0.95146 0.92887 1.25863 0.95269 1.00384 0.97693 1.70043 1.41367 1.37151 1.08407 0.85479 0.78541 0.79416 0.77451 1.18392 1.20371 1.20360 1.23128 1.01469 0.93989 0.88768 0.93703 0.88464 0.93091 0.91367 0.90927 0.71495 0.89203 0.89707 0.91353 0.93907 0.90704 0.92284 0.88380 0.91497 0.91247 0.88685 0.95949 0.98643 0.92426 0.91122 0.86966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 113.37 1.25 1.60 16 2 O -0.39 -7.35 9.07 -134.20 -1.22 -8.56 16 3 C 0.08 1.48 4.54 71.98 0.33 1.80 16 4 C -0.05 -1.05 0.78 -52.03 -0.04 -1.10 16 5 C 0.50 10.15 6.74 71.24 0.48 10.63 16 6 O -0.54 -13.30 16.21 21.98 0.36 -12.94 16 7 O -0.49 -7.68 12.30 -46.06 -0.57 -8.25 16 8 C -0.09 -2.08 6.05 31.49 0.19 -1.89 16 9 C 0.03 0.84 5.59 86.45 0.48 1.32 16 10 N -0.50 -14.02 4.91 -860.69 -4.22 -18.24 16 11 C 0.07 1.94 1.42 44.17 0.06 2.00 16 12 H 0.08 2.06 7.28 -2.38 -0.02 2.04 16 13 C -0.14 -3.28 8.63 71.98 0.62 -2.66 16 14 C 0.50 21.12 6.27 87.66 0.55 21.67 16 15 O -0.57 -30.09 14.77 -3.03 -0.04 -30.14 16 16 N -0.61 -26.32 2.86 -851.12 -2.43 -28.75 16 17 C 0.07 2.17 9.81 127.77 1.25 3.42 16 18 C 0.26 14.41 5.12 85.63 0.44 14.85 16 19 C -0.54 -31.53 9.39 25.60 0.24 -31.28 16 20 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 21 C 0.01 0.39 5.46 84.65 0.46 0.85 16 22 N -0.93 -56.90 13.29 21.45 0.28 -56.62 16 23 Si 0.97 45.38 29.54 68.60 2.03 47.40 16 24 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 25 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 26 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 27 C 0.05 1.14 4.44 86.45 0.38 1.53 16 28 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.42 2.80 9.10 -74.06 -0.67 2.13 16 34 H 0.09 2.14 7.52 -2.39 -0.02 2.12 16 35 H 0.08 1.78 7.69 -2.39 -0.02 1.76 16 36 H 0.07 2.51 6.96 -2.39 -0.02 2.49 16 37 H 0.04 1.22 7.97 -2.39 -0.02 1.20 16 38 H 0.07 1.74 6.04 -2.39 -0.01 1.73 16 39 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.10 1.64 7.45 -2.39 -0.02 1.62 16 41 H 0.07 1.71 8.14 -2.39 -0.02 1.70 16 42 H 0.07 2.20 8.07 -2.38 -0.02 2.18 16 43 H 0.09 2.24 4.67 -2.39 -0.01 2.23 16 44 H 0.02 1.24 8.07 -2.39 -0.02 1.23 16 45 H 0.00 -0.29 7.50 -2.39 -0.02 -0.31 16 46 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 47 H 0.07 1.54 6.70 -2.39 -0.02 1.52 16 48 H 0.11 1.96 7.60 -2.38 -0.02 1.95 16 Total: -1.00 -80.30 385.25 1.18 -79.12 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: 0.29 Total: 14.23 kcal Atomic # 6 Polarization: 16.05 SS G_CDS: 6.70 Total: 22.75 kcal Atomic # 7 Polarization: -97.24 SS G_CDS: -6.37 Total: -103.61 kcal Atomic # 8 Polarization: -58.42 SS G_CDS: -1.47 Total: -59.89 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.40 kcal Total: -80.30 1.18 -79.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593968835.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.576 kcal (2) G-P(sol) polarization free energy of solvation -80.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds