Wall clock time and date at job start Tue Mar 31 2020 15:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99629 * 2 1 4 4 C 1.53000 * 109.46726 * 180.02562 * 3 2 1 5 5 C 1.50699 * 110.27729 * 57.90932 * 4 3 2 6 6 O 1.20821 * 119.99790 * 120.70105 * 5 4 3 7 7 O 1.34227 * 119.99623 * 300.69966 * 5 4 3 8 8 C 1.54595 * 110.30680 * 295.71326 * 4 3 2 9 9 C 1.54941 * 102.92099 * 219.12870 * 8 4 3 10 10 N 1.48529 * 103.22771 * 37.41571 * 9 8 4 11 11 C 1.46897 * 111.00262 * 200.27764 * 10 9 8 12 12 H 1.09000 * 109.47240 * 57.39552 * 11 10 9 13 13 C 1.53000 * 109.47378 * 177.39611 * 11 10 9 14 14 C 1.50698 * 109.47460 * 297.39729 * 11 10 9 15 15 O 1.21288 * 119.99719 * 359.97438 * 14 11 10 16 16 N 1.34769 * 120.00435 * 179.97438 * 14 11 10 17 17 C 1.46500 * 119.99935 * 0.02562 * 16 14 11 18 18 C 1.46501 * 120.00380 * 179.97438 * 16 14 11 19 19 C 1.50704 * 109.47014 * 90.00080 * 18 16 14 20 20 H 1.08001 * 119.99535 * 0.02562 * 19 18 16 21 21 C 1.37874 * 120.00035 * 180.02562 * 19 18 16 22 22 N 1.31505 * 119.99855 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99691 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47101 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.46661 * 120.00085 * 23 21 19 26 26 H 1.48494 * 109.46985 * 239.99943 * 23 21 19 27 27 C 1.47901 * 105.81969 * 320.79140 * 10 9 8 28 28 H 1.09004 * 109.47459 * 59.99983 * 1 2 3 29 29 H 1.09000 * 109.47196 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47484 * 299.99646 * 1 2 3 31 31 H 1.09002 * 109.47382 * 59.99956 * 3 2 1 32 32 H 1.09001 * 109.46938 * 299.99942 * 3 2 1 33 33 H 0.96708 * 116.99469 * 179.97438 * 7 5 4 34 34 H 1.09004 * 110.72443 * 337.48382 * 8 4 3 35 35 H 1.09000 * 110.72513 * 100.77229 * 8 4 3 36 36 H 1.08998 * 110.66668 * 278.98012 * 9 8 4 37 37 H 1.09007 * 110.66454 * 155.84849 * 9 8 4 38 38 H 1.08998 * 109.47177 * 60.00281 * 13 11 10 39 39 H 1.08996 * 109.47226 * 180.02562 * 13 11 10 40 40 H 1.09010 * 109.46940 * 300.00163 * 13 11 10 41 41 H 1.09007 * 109.47346 * 89.99828 * 17 16 14 42 42 H 1.08995 * 109.47420 * 209.99728 * 17 16 14 43 43 H 1.08997 * 109.47198 * 329.99789 * 17 16 14 44 44 H 1.08997 * 109.47302 * 209.99928 * 18 16 14 45 45 H 1.08998 * 109.46861 * 330.00818 * 18 16 14 46 46 H 0.97010 * 119.99694 * 180.02562 * 22 21 19 47 47 H 1.08997 * 109.92111 * 265.97601 * 27 10 9 48 48 H 1.09004 * 110.08100 * 144.77010 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 3.9962 0.3950 -1.1986 6 8 4.7483 0.8969 -2.0000 7 8 3.5711 -0.8658 -1.3752 8 6 4.0211 0.5150 1.3053 9 6 5.3069 1.3100 1.6449 10 7 4.9612 2.6998 1.2511 11 6 6.1722 3.5050 1.0438 12 1 6.7974 3.0325 0.2862 13 6 5.7783 4.9079 0.5776 14 6 6.9384 3.6024 2.3379 15 8 6.5167 3.0552 3.3349 16 7 8.0920 4.2973 2.3874 17 6 8.6010 4.9587 1.1833 18 6 8.8365 4.3925 3.6456 19 6 9.8145 3.2496 3.7382 20 1 9.8756 2.5252 2.9395 21 6 10.6311 3.1289 4.8425 22 7 10.5563 4.0108 5.8151 23 14 11.8429 1.7118 4.9575 24 1 11.7311 0.8651 3.7427 25 1 13.2236 2.2485 5.0609 26 1 11.5375 0.8959 6.1600 27 6 4.1822 2.5822 -0.0007 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.6885 1.8465 0.8900 32 1 1.6885 1.8464 -0.8900 33 1 3.8936 -1.3321 -2.1586 34 1 3.2785 0.6269 2.0955 35 1 4.2512 -0.5370 1.1369 36 1 6.1512 0.9434 1.0611 37 1 5.5227 1.2549 2.7119 38 1 5.1532 5.3804 1.3352 39 1 6.6769 5.5052 0.4234 40 1 5.2242 4.8375 -0.3585 41 1 8.2046 5.9727 1.1306 42 1 9.6896 4.9958 1.2218 43 1 8.2875 4.3997 0.3017 44 1 9.3783 5.3377 3.6766 45 1 8.1412 4.3444 4.4836 46 1 11.1312 3.9260 6.5919 47 1 4.8437 2.6852 -0.8608 48 1 3.4086 3.3494 -0.0335 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001593968836.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:45 Heat of formation + Delta-G solvation = -145.158720 kcal Electronic energy + Delta-G solvation = -29891.340917 eV Core-core repulsion = 25754.477149 eV Total energy + Delta-G solvation = -4136.863767 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.15602 -39.55918 -38.39007 -37.48603 -36.20107 -34.82415 -33.95270 -32.54083 -30.72902 -28.95491 -27.48183 -27.21411 -26.10331 -25.11705 -24.54345 -23.38085 -22.09329 -21.20935 -19.74374 -18.56739 -18.02522 -17.32849 -16.80266 -16.45676 -16.29471 -16.17496 -15.85653 -15.47651 -15.11430 -14.64462 -14.56470 -14.13970 -13.98021 -13.86213 -13.33809 -13.21792 -12.96468 -12.72532 -12.35794 -12.25924 -12.15732 -12.03418 -11.88466 -11.69459 -11.65221 -11.49723 -11.32167 -11.19882 -11.10498 -10.99591 -10.92856 -10.77820 -10.56713 -10.50339 -10.13197 -9.93902 -9.58898 -8.81986 -8.42921 -8.24500 -7.60057 -6.03313 -4.07935 1.99072 2.76329 3.30169 3.32057 3.37448 3.40838 3.47939 3.74858 4.15223 4.28602 4.40571 4.47138 4.62369 4.88192 4.98372 5.04446 5.07008 5.11448 5.20718 5.26961 5.28211 5.31634 5.33714 5.37486 5.39458 5.58451 5.62018 5.66234 5.77255 5.82796 5.87264 5.95217 6.04068 6.16148 6.29299 6.31203 6.37896 6.80560 6.89767 6.92764 7.14504 7.47226 7.57624 7.73542 7.93611 8.24975 8.45240 8.92319 9.14843 9.57345 11.04693 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.017293 B = 0.003025 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.731130 B = 9253.497520 C = 9695.956986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.374 6.374 3 C 0.079 3.921 4 C -0.062 4.062 5 C 0.496 3.504 6 O -0.518 6.518 7 O -0.493 6.493 8 C -0.100 4.100 9 C 0.030 3.970 10 N -0.487 5.487 11 C 0.055 3.945 12 H 0.063 0.937 13 C -0.153 4.153 14 C 0.513 3.487 15 O -0.525 6.525 16 N -0.602 5.602 17 C 0.081 3.919 18 C 0.246 3.754 19 C -0.525 4.525 20 H 0.056 0.944 21 C 0.061 3.939 22 N -0.894 5.894 23 Si 0.897 3.103 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.282 1.282 27 C 0.045 3.955 28 H 0.038 0.962 29 H 0.086 0.914 30 H 0.042 0.958 31 H 0.074 0.926 32 H 0.053 0.947 33 H 0.404 0.596 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.040 0.960 37 H 0.115 0.885 38 H 0.068 0.932 39 H 0.078 0.922 40 H 0.060 0.940 41 H 0.048 0.952 42 H 0.073 0.927 43 H 0.057 0.943 44 H 0.032 0.968 45 H 0.044 0.956 46 H 0.262 0.738 47 H 0.076 0.924 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.092 -3.945 -16.094 24.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.292 6.292 3 C 0.002 3.998 4 C -0.064 4.064 5 C 0.338 3.662 6 O -0.406 6.406 7 O -0.302 6.302 8 C -0.138 4.138 9 C -0.097 4.097 10 N -0.212 5.212 11 C -0.057 4.057 12 H 0.081 0.919 13 C -0.210 4.210 14 C 0.298 3.702 15 O -0.401 6.401 16 N -0.335 5.335 17 C -0.063 4.063 18 C 0.127 3.873 19 C -0.564 4.564 20 H 0.075 0.925 21 C -0.141 4.141 22 N -0.534 5.534 23 Si 0.725 3.275 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.208 1.208 27 C -0.083 4.083 28 H 0.057 0.943 29 H 0.105 0.895 30 H 0.061 0.939 31 H 0.092 0.908 32 H 0.071 0.929 33 H 0.262 0.738 34 H 0.112 0.888 35 H 0.101 0.899 36 H 0.058 0.942 37 H 0.133 0.867 38 H 0.088 0.912 39 H 0.096 0.904 40 H 0.079 0.921 41 H 0.067 0.933 42 H 0.091 0.909 43 H 0.075 0.925 44 H 0.050 0.950 45 H 0.062 0.938 46 H 0.072 0.928 47 H 0.094 0.906 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -18.337 -3.728 -14.824 23.873 hybrid contribution 1.328 -1.177 -1.227 2.158 sum -17.010 -4.905 -16.052 23.897 Atomic orbital electron populations 1.22744 0.81041 1.02847 0.99880 1.88014 1.19403 1.26446 1.95371 1.22494 0.89933 0.85800 1.01572 1.21382 0.95880 0.95839 0.93251 1.23025 0.76752 0.80336 0.86080 1.90698 1.34328 1.70488 1.45132 1.84651 1.69090 1.26973 1.49523 1.22589 0.98141 0.99271 0.93757 1.23498 0.95264 0.86581 1.04337 1.64698 1.18285 1.11794 1.26403 1.21830 0.91313 0.96277 0.96314 0.91934 1.22055 1.03022 0.94559 1.01378 1.19966 0.81162 0.79693 0.89382 1.90626 1.67881 1.45303 1.36291 1.48092 1.22256 1.50711 1.12414 1.21792 1.00763 0.96191 0.87549 1.19282 0.90977 0.96948 0.80063 1.21466 1.19422 1.10867 1.04600 0.92542 1.24930 0.97408 0.96372 0.95394 1.69943 1.39494 1.35454 1.08465 0.86459 0.80633 0.82314 0.78115 1.19861 1.20980 1.20846 1.22950 0.98627 0.92722 0.93961 0.94321 0.89508 0.93930 0.90823 0.92900 0.73817 0.88838 0.89903 0.94156 0.86657 0.91249 0.90355 0.92149 0.93348 0.90863 0.92482 0.95025 0.93759 0.92784 0.90607 0.89087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.37 -3.67 9.13 -52.70 -0.48 -4.15 16 3 C 0.08 0.73 4.49 37.16 0.17 0.90 16 4 C -0.06 -0.70 0.72 -154.30 -0.11 -0.81 16 5 C 0.50 5.92 6.87 36.01 0.25 6.17 16 6 O -0.52 -7.44 16.00 -18.75 -0.30 -7.74 16 7 O -0.49 -4.78 12.01 -45.31 -0.54 -5.32 16 8 C -0.10 -1.23 5.94 -24.87 -0.15 -1.38 16 9 C 0.03 0.48 5.66 -1.90 -0.01 0.46 16 10 N -0.49 -7.37 4.88 -223.88 -1.09 -8.46 16 11 C 0.05 0.87 1.35 -68.87 -0.09 0.78 16 12 H 0.06 0.99 7.26 -51.93 -0.38 0.61 16 13 C -0.15 -1.94 8.73 37.16 0.32 -1.62 16 14 C 0.51 10.78 6.82 -10.99 -0.08 10.71 16 15 O -0.52 -13.08 13.85 5.55 0.08 -13.00 16 16 N -0.60 -12.87 2.86 -182.95 -0.52 -13.39 16 17 C 0.08 1.30 8.80 59.85 0.53 1.83 16 18 C 0.25 6.49 5.16 -5.19 -0.03 6.46 16 19 C -0.52 -14.97 9.39 -34.44 -0.32 -15.29 16 20 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 21 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 22 N -0.89 -26.71 13.29 55.43 0.74 -25.97 16 23 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 24 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 26 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 27 C 0.05 0.55 4.68 -2.75 -0.01 0.54 16 28 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.07 0.63 8.11 -51.93 -0.42 0.21 16 32 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.40 2.20 9.10 45.56 0.41 2.61 16 34 H 0.09 1.11 7.84 -51.93 -0.41 0.70 16 35 H 0.08 0.99 7.71 -51.93 -0.40 0.59 16 36 H 0.04 0.66 7.96 -51.93 -0.41 0.25 16 37 H 0.12 2.14 6.46 -51.93 -0.34 1.80 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.08 0.92 4.53 -51.93 -0.24 0.69 16 40 H 0.06 0.64 7.06 -51.92 -0.37 0.27 16 41 H 0.05 0.66 6.95 -51.93 -0.36 0.30 16 42 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 43 H 0.06 0.78 6.01 -51.93 -0.31 0.47 16 44 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 45 H 0.04 1.31 7.42 -51.93 -0.39 0.93 16 46 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 47 H 0.08 0.99 5.80 -51.93 -0.30 0.68 16 48 H 0.09 0.92 7.68 -51.93 -0.40 0.52 16 LS Contribution 380.81 15.07 5.74 5.74 Total: -1.00 -35.72 380.81 -6.73 -42.44 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -6.80 Total: 1.14 kcal Atomic # 6 Polarization: 10.25 SS G_CDS: 1.48 Total: 11.73 kcal Atomic # 7 Polarization: -46.95 SS G_CDS: -0.88 Total: -47.83 kcal Atomic # 8 Polarization: -28.97 SS G_CDS: -1.25 Total: -30.21 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.72 -6.73 -42.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593968836.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.717 kcal (2) G-P(sol) polarization free energy of solvation -35.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds