Wall clock time and date at job start Tue Mar 31 2020 15:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42905 * 114.00239 * 2 1 4 4 C 1.52995 * 109.47071 * 179.97438 * 3 2 1 5 5 C 1.50706 * 110.28916 * 300.69720 * 4 3 2 6 6 O 1.20818 * 120.00197 * 239.02590 * 5 4 3 7 7 O 1.34230 * 119.99763 * 59.30103 * 5 4 3 8 8 C 1.54256 * 110.32395 * 62.82680 * 4 3 2 9 9 C 1.54385 * 105.05929 * 118.99764 * 8 4 3 10 10 N 1.48565 * 104.59237 * 23.85218 * 9 8 4 11 11 C 1.46902 * 110.99378 * 200.95961 * 10 9 8 12 12 H 1.08996 * 109.47405 * 60.12868 * 11 10 9 13 13 C 1.53008 * 109.46645 * 180.12755 * 11 10 9 14 14 C 1.50700 * 109.47392 * 300.12460 * 11 10 9 15 15 O 1.21279 * 120.00011 * 0.02562 * 14 11 10 16 16 N 1.34776 * 119.99982 * 180.02562 * 14 11 10 17 17 C 1.46502 * 119.99832 * 359.97438 * 16 14 11 18 18 C 1.46501 * 119.99887 * 180.02562 * 16 14 11 19 19 C 1.50698 * 109.47158 * 90.00038 * 18 16 14 20 20 H 1.07995 * 120.00318 * 359.97438 * 19 18 16 21 21 C 1.37879 * 119.99932 * 180.02562 * 19 18 16 22 22 N 1.31516 * 119.99977 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99981 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47156 * 60.00150 * 23 21 19 25 25 H 1.48498 * 109.47047 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47412 * 300.00051 * 23 21 19 27 27 C 1.48816 * 104.23617 * 320.49298 * 10 9 8 28 28 H 1.09005 * 109.46612 * 60.00283 * 1 2 3 29 29 H 1.08995 * 109.47193 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47378 * 300.00627 * 1 2 3 31 31 H 1.09004 * 109.46963 * 59.99797 * 3 2 1 32 32 H 1.08994 * 109.46927 * 300.00047 * 3 2 1 33 33 H 0.96692 * 116.99954 * 180.02562 * 7 5 4 34 34 H 1.08998 * 110.32580 * 237.88865 * 8 4 3 35 35 H 1.08992 * 110.32376 * 0.10277 * 8 4 3 36 36 H 1.08997 * 110.40993 * 142.62785 * 9 8 4 37 37 H 1.08999 * 110.40942 * 264.95607 * 9 8 4 38 38 H 1.09003 * 109.46929 * 299.99821 * 13 11 10 39 39 H 1.08996 * 109.47127 * 59.99943 * 13 11 10 40 40 H 1.09003 * 109.46835 * 179.97438 * 13 11 10 41 41 H 1.08995 * 109.47324 * 90.00392 * 17 16 14 42 42 H 1.09003 * 109.46927 * 210.00121 * 17 16 14 43 43 H 1.08997 * 109.47033 * 330.00004 * 17 16 14 44 44 H 1.09001 * 109.46909 * 209.99896 * 18 16 14 45 45 H 1.08996 * 109.47036 * 329.99332 * 18 16 14 46 46 H 0.97003 * 120.00105 * 180.02562 * 22 21 19 47 47 H 1.09004 * 110.44989 * 280.77262 * 27 10 9 48 48 H 1.09006 * 110.49556 * 158.25296 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 6 3.9989 0.4242 1.2165 6 8 4.7565 0.9435 2.0013 7 8 3.5742 -0.8321 1.4244 8 6 4.0179 0.4835 -1.2859 9 6 4.9198 1.5182 -1.9925 10 7 5.3811 2.4180 -0.9040 11 6 5.8246 3.7108 -1.4423 12 1 4.9962 4.1912 -1.9628 13 6 6.2942 4.6070 -0.2945 14 6 6.9627 3.4903 -2.4053 15 8 7.3644 2.3667 -2.6222 16 7 7.5340 4.5417 -3.0254 17 6 7.0484 5.8989 -2.7637 18 6 8.6400 4.3272 -3.9619 19 6 8.0906 4.1285 -5.3510 20 1 7.0242 4.1585 -5.5194 21 6 8.9492 3.9073 -6.4069 22 7 10.2478 3.8703 -6.2018 23 14 8.2681 3.6602 -8.1286 24 1 7.5021 4.8656 -8.5356 25 1 9.3892 3.4430 -9.0779 26 1 7.3717 2.4764 -8.1413 27 6 4.1843 2.5849 -0.0354 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 3.8983 -1.2793 2.2181 34 1 4.5899 -0.4106 -1.0381 35 1 3.1683 0.2271 -1.9187 36 1 5.7697 1.0235 -2.4626 37 1 4.3485 2.0771 -2.7337 38 1 5.4710 4.7665 0.4020 39 1 7.1226 4.1266 0.2260 40 1 6.6237 5.5662 -0.6939 41 1 7.5991 6.3267 -1.9260 42 1 7.1983 6.5156 -3.6499 43 1 5.9864 5.8642 -2.5207 44 1 9.2979 5.1963 -3.9523 45 1 9.2024 3.4426 -3.6635 46 1 10.8519 3.7151 -6.9447 47 1 3.4971 3.3113 -0.4693 48 1 4.4806 2.8926 0.9675 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001593968838.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:51 Heat of formation + Delta-G solvation = -144.304274 kcal Electronic energy + Delta-G solvation = -29869.423650 eV Core-core repulsion = 25732.596935 eV Total energy + Delta-G solvation = -4136.826716 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -41.01286 -39.55214 -38.39484 -37.46750 -36.03668 -34.84687 -33.94544 -32.54802 -30.69766 -28.94289 -27.51260 -27.22560 -26.11400 -25.17769 -24.49109 -23.39379 -22.03633 -21.07234 -19.85980 -18.41700 -17.96588 -17.27245 -16.75205 -16.46885 -16.35405 -16.25687 -15.86072 -15.40844 -15.00982 -14.59545 -14.55237 -14.20753 -14.05246 -13.80879 -13.46712 -13.01143 -12.87894 -12.64210 -12.41145 -12.33602 -12.18766 -12.02392 -11.91070 -11.62268 -11.54746 -11.46267 -11.32357 -11.28040 -11.17330 -10.95970 -10.94153 -10.65896 -10.55053 -10.39094 -10.13550 -9.97437 -9.63647 -8.81521 -8.43053 -8.27318 -7.61411 -6.03719 -4.08816 2.17912 2.90609 3.24482 3.31070 3.35910 3.37427 3.46124 3.75043 4.10490 4.32257 4.42751 4.48623 4.60838 4.86960 4.94627 5.00581 5.04583 5.10626 5.16873 5.22498 5.25363 5.27217 5.30840 5.35824 5.39084 5.53691 5.60617 5.72477 5.78187 5.82548 5.88349 5.93212 6.03879 6.16765 6.32501 6.40589 6.47450 6.76068 6.89982 6.93032 7.13967 7.46968 7.56260 7.90758 7.92670 8.24015 8.43930 8.90801 9.13537 9.56243 11.04247 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.016742 B = 0.003057 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.008146 B = 9157.642086 C = 9841.594757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.371 6.371 3 C 0.075 3.925 4 C -0.053 4.053 5 C 0.500 3.500 6 O -0.507 6.507 7 O -0.498 6.498 8 C -0.102 4.102 9 C 0.027 3.973 10 N -0.480 5.480 11 C 0.054 3.946 12 H 0.062 0.938 13 C -0.151 4.151 14 C 0.512 3.488 15 O -0.524 6.524 16 N -0.602 5.602 17 C 0.082 3.918 18 C 0.247 3.753 19 C -0.527 4.527 20 H 0.055 0.945 21 C 0.061 3.939 22 N -0.894 5.894 23 Si 0.898 3.102 24 H -0.277 1.277 25 H -0.286 1.286 26 H -0.276 1.276 27 C 0.048 3.952 28 H 0.041 0.959 29 H 0.087 0.913 30 H 0.039 0.961 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.403 0.597 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.115 0.885 37 H 0.043 0.957 38 H 0.059 0.941 39 H 0.069 0.931 40 H 0.077 0.923 41 H 0.048 0.952 42 H 0.073 0.927 43 H 0.056 0.944 44 H 0.032 0.968 45 H 0.044 0.956 46 H 0.264 0.736 47 H 0.057 0.943 48 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.592 -1.874 14.783 24.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.290 6.290 3 C -0.002 4.002 4 C -0.055 4.055 5 C 0.341 3.659 6 O -0.395 6.395 7 O -0.308 6.308 8 C -0.140 4.140 9 C -0.100 4.100 10 N -0.205 5.205 11 C -0.058 4.058 12 H 0.080 0.920 13 C -0.209 4.209 14 C 0.297 3.703 15 O -0.400 6.400 16 N -0.335 5.335 17 C -0.062 4.062 18 C 0.128 3.872 19 C -0.566 4.566 20 H 0.074 0.926 21 C -0.141 4.141 22 N -0.533 5.533 23 Si 0.725 3.275 24 H -0.203 1.203 25 H -0.212 1.212 26 H -0.202 1.202 27 C -0.080 4.080 28 H 0.059 0.941 29 H 0.106 0.894 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.261 0.739 34 H 0.099 0.901 35 H 0.104 0.896 36 H 0.133 0.867 37 H 0.061 0.939 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.096 0.904 41 H 0.067 0.933 42 H 0.091 0.909 43 H 0.075 0.925 44 H 0.050 0.950 45 H 0.062 0.938 46 H 0.074 0.926 47 H 0.075 0.925 48 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -18.519 -2.524 14.697 23.776 hybrid contribution -1.062 0.327 -0.955 1.465 sum -19.581 -2.197 13.742 24.022 Atomic orbital electron populations 1.22755 0.81037 1.02943 0.99831 1.88032 1.19378 1.26223 1.95322 1.22483 0.90502 0.85957 1.01268 1.21237 0.94728 0.96183 0.93366 1.22769 0.77122 0.80039 0.85968 1.90713 1.33236 1.69258 1.46249 1.84635 1.69258 1.28191 1.48748 1.22370 0.99768 0.98843 0.92996 1.23411 0.99369 0.94312 0.92949 1.65395 1.28462 1.10344 1.16255 1.21825 0.97229 0.90788 0.95947 0.92032 1.22023 1.02336 0.99363 0.97129 1.19973 0.83948 0.85311 0.81062 1.90625 1.62983 1.22690 1.63737 1.48094 1.36431 1.05074 1.43859 1.21786 0.98062 0.85170 1.01210 1.19272 0.83572 0.97970 0.86400 1.21382 0.93280 1.49603 0.92297 0.92642 1.24934 0.94769 0.95149 0.99219 1.69924 1.01867 1.49445 1.32077 0.86569 0.78482 0.78689 0.83722 1.20303 1.21159 1.20195 1.23199 0.91590 0.92206 1.01033 0.94058 0.89404 0.94237 0.92695 0.91586 0.73920 0.90072 0.89586 0.86715 0.93870 0.92195 0.91175 0.90440 0.93339 0.90872 0.92535 0.95031 0.93785 0.92645 0.92538 0.87762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.32 16 2 O -0.37 -3.61 9.03 -52.02 -0.47 -4.08 16 3 C 0.08 0.67 4.53 37.16 0.17 0.84 16 4 C -0.05 -0.61 0.79 -154.28 -0.12 -0.73 16 5 C 0.50 6.35 6.74 36.01 0.24 6.59 16 6 O -0.51 -7.83 16.18 -18.74 -0.30 -8.13 16 7 O -0.50 -5.18 12.23 -45.14 -0.55 -5.73 16 8 C -0.10 -1.28 6.08 -25.35 -0.15 -1.43 16 9 C 0.03 0.42 5.50 -2.18 -0.01 0.40 16 10 N -0.48 -7.48 5.00 -223.17 -1.12 -8.59 16 11 C 0.05 0.85 1.45 -68.86 -0.10 0.75 16 12 H 0.06 0.86 7.24 -51.93 -0.38 0.48 16 13 C -0.15 -1.97 8.79 37.16 0.33 -1.64 16 14 C 0.51 10.73 6.81 -10.99 -0.07 10.66 16 15 O -0.52 -13.20 13.64 5.56 0.08 -13.12 16 16 N -0.60 -12.75 2.86 -182.96 -0.52 -13.27 16 17 C 0.08 1.27 8.80 59.85 0.53 1.80 16 18 C 0.25 6.49 5.16 -5.19 -0.03 6.46 16 19 C -0.53 -14.90 9.39 -34.44 -0.32 -15.22 16 20 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 21 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 22 N -0.89 -26.68 13.29 55.43 0.74 -25.94 16 23 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 26 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 27 C 0.05 0.57 4.45 -2.04 -0.01 0.57 16 28 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.40 2.50 9.10 45.56 0.41 2.91 16 34 H 0.08 1.09 7.70 -51.93 -0.40 0.69 16 35 H 0.09 0.96 7.57 -51.93 -0.39 0.57 16 36 H 0.11 2.19 6.30 -51.93 -0.33 1.86 16 37 H 0.04 0.64 7.98 -51.93 -0.41 0.22 16 38 H 0.06 0.64 7.07 -51.93 -0.37 0.27 16 39 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 40 H 0.08 0.91 4.53 -51.93 -0.24 0.67 16 41 H 0.05 0.65 6.95 -51.93 -0.36 0.29 16 42 H 0.07 1.17 8.07 -51.93 -0.42 0.75 16 43 H 0.06 0.72 6.01 -51.93 -0.31 0.41 16 44 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 45 H 0.04 1.31 7.42 -51.93 -0.39 0.93 16 46 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 47 H 0.06 0.55 7.63 -51.93 -0.40 0.15 16 48 H 0.10 1.31 6.44 -51.93 -0.33 0.98 16 LS Contribution 381.07 15.07 5.74 5.74 Total: -1.00 -36.21 381.07 -6.78 -42.99 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -6.81 Total: 1.35 kcal Atomic # 6 Polarization: 10.55 SS G_CDS: 1.46 Total: 12.01 kcal Atomic # 7 Polarization: -46.90 SS G_CDS: -0.90 Total: -47.80 kcal Atomic # 8 Polarization: -29.82 SS G_CDS: -1.25 Total: -31.07 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.21 -6.78 -42.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593968838.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.313 kcal (2) G-P(sol) polarization free energy of solvation -36.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds