Wall clock time and date at job start Tue Mar 31 2020 15:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47018 * 2 1 4 4 H 1.09007 * 109.46647 * 56.48802 * 3 2 1 5 5 C 1.50696 * 109.47146 * 176.48313 * 3 2 1 6 6 O 1.21299 * 119.99838 * 102.54472 * 5 3 2 7 7 N 1.34780 * 120.00533 * 282.54154 * 5 3 2 8 8 C 1.37088 * 120.00183 * 185.28009 * 7 5 3 9 9 H 1.08002 * 120.00618 * 321.34460 * 8 7 5 10 10 C 1.38947 * 119.99933 * 141.34876 * 8 7 5 11 11 N 1.31416 * 120.00341 * 157.64758 * 10 8 7 12 12 Si 1.86801 * 120.00040 * 337.64024 * 10 8 7 13 13 H 1.48505 * 109.46772 * 91.15448 * 12 10 8 14 14 H 1.48494 * 109.47349 * 211.14924 * 12 10 8 15 15 H 1.48497 * 109.47102 * 331.15593 * 12 10 8 16 16 C 1.46506 * 119.99453 * 5.56254 * 7 5 3 17 17 C 1.50697 * 109.47293 * 95.85487 * 16 7 5 18 18 O 1.20819 * 120.00019 * 359.03173 * 17 16 7 19 19 O 1.34227 * 119.99801 * 179.03546 * 17 16 7 20 20 N 1.46899 * 109.47269 * 296.48844 * 3 2 1 21 21 C 1.47012 * 110.99626 * 298.63263 * 20 3 2 22 22 C 1.53106 * 109.25397 * 177.61074 * 21 20 3 23 23 O 1.43005 * 109.25950 * 56.84702 * 22 21 20 24 24 C 1.43018 * 113.74164 * 301.32765 * 23 22 21 25 25 H 1.09000 * 109.50771 * 298.74063 * 24 23 22 26 26 C 1.53001 * 109.54467 * 178.62844 * 24 23 22 27 27 C 1.53001 * 109.47063 * 65.19273 * 26 24 23 28 28 C 1.47014 * 110.99894 * 174.99767 * 20 3 2 29 29 H 1.09004 * 109.46759 * 60.00190 * 1 2 3 30 30 H 1.09004 * 109.46885 * 179.97438 * 1 2 3 31 31 H 1.08989 * 109.47292 * 299.99983 * 1 2 3 32 32 H 1.09002 * 109.47553 * 240.00095 * 2 1 3 33 33 H 1.09002 * 109.47274 * 119.99743 * 2 1 3 34 34 H 0.96999 * 120.00480 * 180.02562 * 11 10 8 35 35 H 1.08998 * 109.46365 * 215.85701 * 16 7 5 36 36 H 1.08997 * 109.47073 * 335.84951 * 16 7 5 37 37 H 0.96701 * 117.00050 * 179.97438 * 19 17 16 38 38 H 1.08997 * 109.50749 * 297.53708 * 21 20 3 39 39 H 1.08999 * 109.51086 * 57.67563 * 21 20 3 40 40 H 1.09005 * 109.50259 * 296.90656 * 22 21 20 41 41 H 1.09002 * 109.50258 * 176.78373 * 22 21 20 42 42 H 1.08994 * 109.46968 * 185.19720 * 26 24 23 43 43 H 1.09003 * 109.46686 * 305.19719 * 26 24 23 44 44 H 1.08998 * 109.46853 * 179.97438 * 27 26 24 45 45 H 1.08999 * 109.47546 * 300.00799 * 27 26 24 46 46 H 1.08999 * 109.46535 * 60.00556 * 27 26 24 47 47 H 1.09000 * 109.50903 * 302.32421 * 28 20 3 48 48 H 1.09002 * 109.50631 * 62.41797 * 28 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6261 1.9742 0.8569 5 6 3.5444 1.4435 0.0872 6 8 4.2093 1.6510 -0.9059 7 7 4.1513 1.2138 1.2685 8 6 5.5140 1.3213 1.3714 9 1 6.1454 0.9754 0.5663 10 6 6.0831 1.8751 2.5116 11 7 7.3288 1.5978 2.8254 12 14 5.0776 3.0141 3.5984 13 1 4.3994 2.2198 4.6541 14 1 5.9746 4.0142 4.2310 15 1 4.0595 3.7135 2.7742 16 6 3.3550 0.8432 2.4411 17 6 3.3420 -0.6567 2.5859 18 8 3.9222 -1.3464 1.7812 19 8 2.6857 -1.2265 3.6088 20 7 1.6208 2.1102 -1.2396 21 6 2.1882 1.4381 -2.4176 22 6 1.6793 2.1279 -3.6862 23 8 2.0207 3.5158 -3.6378 24 6 1.4839 4.2016 -2.5034 25 1 0.3953 4.1554 -2.5317 26 6 1.9341 5.6636 -2.5289 27 6 1.3241 6.3639 -3.7448 28 6 1.9908 3.5329 -1.2228 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 7.7259 1.9841 3.6216 35 1 3.7926 1.2907 3.3335 36 1 2.3344 1.2052 2.3164 37 1 2.7053 -2.1920 3.6597 38 1 3.2759 1.4981 -2.3822 39 1 1.8806 0.3925 -2.4235 40 1 0.5963 2.0213 -3.7490 41 1 2.1420 1.6695 -4.5603 42 1 1.6022 6.1619 -1.6181 43 1 3.0214 5.7079 -2.5917 44 1 1.6445 7.4056 -3.7627 45 1 1.6559 5.8655 -4.6556 46 1 0.2368 6.3196 -3.6819 47 1 1.5392 4.0163 -0.3565 48 1 3.0754 3.6262 -1.1675 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001595484121.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:42 Heat of formation + Delta-G solvation = -137.446821 kcal Electronic energy + Delta-G solvation = -31261.110912 eV Core-core repulsion = 27124.581557 eV Total energy + Delta-G solvation = -4136.529354 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.58617 -39.66135 -38.40917 -36.13458 -35.59610 -34.83522 -33.84802 -32.74102 -32.04584 -29.76184 -28.19767 -28.12302 -25.90184 -24.38109 -23.70018 -22.04030 -21.77886 -20.91677 -20.27937 -18.72268 -17.79236 -17.41612 -16.89729 -16.38135 -16.22405 -16.07898 -15.66964 -15.14030 -14.98417 -14.65215 -14.15642 -14.07777 -13.97925 -13.58407 -13.53261 -13.16080 -12.92704 -12.88012 -12.71872 -12.48906 -12.28744 -11.96751 -11.84117 -11.63984 -11.40806 -11.22810 -11.19734 -11.03378 -10.99191 -10.76206 -10.62768 -10.58054 -10.43342 -10.17459 -10.13401 -10.05078 -9.46958 -9.30560 -9.09860 -8.02299 -7.52742 -6.52050 -4.11471 2.64512 2.84986 3.02144 3.09523 3.13855 3.67295 3.92440 3.97479 4.06066 4.18544 4.80820 4.87802 5.03116 5.10507 5.13514 5.19339 5.22364 5.29054 5.37613 5.42835 5.52771 5.55880 5.58566 5.63380 5.65131 5.73849 5.75195 5.82080 5.88887 5.92599 5.95649 6.05060 6.13583 6.15301 6.27771 6.30684 6.37818 6.48133 6.71846 6.85464 7.11779 7.22635 7.35639 7.44367 8.13698 8.27306 8.36352 8.80236 9.14019 9.51052 10.59813 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.012753 B = 0.005071 C = 0.004177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.991843 B = 5520.653268 C = 6701.297029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.114 4.114 3 C 0.061 3.939 4 H 0.095 0.905 5 C 0.455 3.545 6 O -0.539 6.539 7 N -0.446 5.446 8 C -0.315 4.315 9 H 0.108 0.892 10 C 0.061 3.939 11 N -0.853 5.853 12 Si 0.859 3.141 13 H -0.269 1.269 14 H -0.279 1.279 15 H -0.259 1.259 16 C 0.091 3.909 17 C 0.458 3.542 18 O -0.485 6.485 19 O -0.527 6.527 20 N -0.504 5.504 21 C -0.023 4.023 22 C 0.071 3.929 23 O -0.380 6.380 24 C 0.101 3.899 25 H 0.060 0.940 26 C -0.118 4.118 27 C -0.146 4.146 28 C 0.012 3.988 29 H 0.067 0.933 30 H 0.048 0.952 31 H 0.051 0.949 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.276 0.724 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.401 0.599 38 H 0.111 0.889 39 H 0.075 0.925 40 H 0.046 0.954 41 H 0.091 0.909 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.051 0.949 45 H 0.061 0.939 46 H 0.050 0.950 47 H 0.075 0.925 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.043 1.965 -3.072 16.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.152 4.152 3 C -0.052 4.052 4 H 0.113 0.887 5 C 0.243 3.757 6 O -0.419 6.419 7 N -0.169 5.169 8 C -0.442 4.442 9 H 0.125 0.875 10 C -0.146 4.146 11 N -0.488 5.488 12 Si 0.685 3.315 13 H -0.196 1.196 14 H -0.205 1.205 15 H -0.183 1.183 16 C -0.035 4.035 17 C 0.297 3.703 18 O -0.369 6.369 19 O -0.339 6.339 20 N -0.227 5.227 21 C -0.150 4.150 22 C -0.006 4.006 23 O -0.299 6.299 24 C 0.043 3.957 25 H 0.077 0.923 26 C -0.156 4.156 27 C -0.203 4.203 28 C -0.117 4.117 29 H 0.086 0.914 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.126 0.874 36 H 0.125 0.875 37 H 0.260 0.740 38 H 0.129 0.871 39 H 0.094 0.906 40 H 0.064 0.936 41 H 0.109 0.891 42 H 0.093 0.907 43 H 0.091 0.909 44 H 0.070 0.930 45 H 0.080 0.920 46 H 0.069 0.931 47 H 0.094 0.906 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.741 2.405 -3.906 16.396 hybrid contribution 0.438 -0.333 1.363 1.470 sum -15.303 2.071 -2.544 15.650 Atomic orbital electron populations 1.21657 0.94638 1.00868 1.02527 1.21603 0.96789 0.93926 1.02881 1.21922 0.92055 0.96930 0.94254 0.88745 1.21434 0.89870 0.80205 0.84161 1.90384 1.66319 1.51775 1.33456 1.43542 1.07233 1.59454 1.06623 1.19018 0.78726 1.40244 1.06209 0.87469 1.25365 0.95728 0.96504 0.96962 1.69768 1.14015 1.39874 1.25150 0.87266 0.81112 0.82384 0.80694 1.19629 1.20509 1.18322 1.21656 0.99105 0.87965 0.94724 1.24346 0.75058 0.92986 0.77891 1.90734 1.39868 1.64245 1.42083 1.84567 1.70564 1.28549 1.50199 1.62711 1.56733 1.01963 1.01341 1.23486 1.04309 0.97831 0.89389 1.22582 0.98790 0.81565 0.97630 1.87946 1.75784 1.21514 1.44615 1.22075 0.96862 0.91652 0.85081 0.92252 1.21530 1.02115 0.92939 0.99001 1.21682 1.00238 0.99713 0.98665 1.22892 1.01499 0.88955 0.98334 0.91414 0.93322 0.93009 0.91034 0.91883 0.91375 0.87447 0.87521 0.74045 0.87150 0.90636 0.93581 0.89077 0.90742 0.90910 0.92969 0.91995 0.93133 0.90631 0.91713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.79 37.16 0.36 -1.30 16 2 C -0.11 -1.74 4.98 -26.73 -0.13 -1.87 16 3 C 0.06 1.03 1.34 -68.86 -0.09 0.94 16 4 H 0.09 1.45 6.65 -51.92 -0.35 1.11 16 5 C 0.46 10.10 6.09 -10.99 -0.07 10.03 16 6 O -0.54 -13.64 11.82 5.54 0.07 -13.57 16 7 N -0.45 -10.47 1.69 -116.10 -0.20 -10.66 16 8 C -0.31 -8.77 9.18 -14.94 -0.14 -8.90 16 9 H 0.11 3.44 7.89 -52.49 -0.41 3.03 16 10 C 0.06 1.65 5.32 -17.47 -0.09 1.56 16 11 N -0.85 -24.29 13.96 55.50 0.77 -23.52 16 12 Si 0.86 19.11 25.28 -169.99 -4.30 14.81 16 13 H -0.27 -5.48 6.48 56.52 0.37 -5.12 16 14 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 15 H -0.26 -5.57 7.11 56.52 0.40 -5.16 16 16 C 0.09 1.78 4.54 -5.19 -0.02 1.76 16 17 C 0.46 8.65 6.29 36.00 0.23 8.87 16 18 O -0.48 -10.87 16.59 -18.74 -0.31 -11.18 16 19 O -0.53 -7.55 13.42 -39.25 -0.53 -8.07 16 20 N -0.50 -8.05 4.10 -227.71 -0.93 -8.99 16 21 C -0.02 -0.38 4.92 -3.71 -0.02 -0.40 16 22 C 0.07 1.02 7.01 37.21 0.26 1.28 16 23 O -0.38 -6.00 10.02 -35.23 -0.35 -6.35 16 24 C 0.10 1.43 2.80 -26.68 -0.07 1.35 16 25 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 26 C -0.12 -1.45 5.65 -26.73 -0.15 -1.61 16 27 C -0.15 -1.55 9.81 37.16 0.36 -1.19 16 28 C 0.01 0.18 4.61 -3.71 -0.02 0.17 16 29 H 0.07 0.82 7.71 -51.93 -0.40 0.42 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.57 8.14 -51.94 -0.42 0.14 16 32 H 0.07 1.17 6.21 -51.93 -0.32 0.85 16 33 H 0.06 1.01 4.39 -51.93 -0.23 0.79 16 34 H 0.28 7.23 8.31 -40.82 -0.34 6.89 16 35 H 0.11 2.17 3.08 -51.93 -0.16 2.01 16 36 H 0.11 1.65 5.62 -51.93 -0.29 1.36 16 37 H 0.40 3.92 9.10 45.56 0.41 4.33 16 38 H 0.11 2.29 4.83 -52.62 -0.25 2.04 16 39 H 0.08 1.17 6.15 -51.93 -0.32 0.85 16 40 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.06 0.72 7.83 -51.93 -0.41 0.31 16 46 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 47 H 0.08 1.09 8.13 -51.93 -0.42 0.67 16 48 H 0.06 1.28 6.48 -51.93 -0.34 0.95 16 LS Contribution 365.55 15.07 5.51 5.51 Total: -1.00 -32.95 365.55 -6.32 -39.28 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: -6.46 Total: 12.06 kcal Atomic # 6 Polarization: 10.28 SS G_CDS: 0.41 Total: 10.69 kcal Atomic # 7 Polarization: -42.82 SS G_CDS: -0.36 Total: -43.17 kcal Atomic # 8 Polarization: -38.05 SS G_CDS: -1.13 Total: -39.17 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -4.30 Total: 14.81 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.95 -6.32 -39.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595484121.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.170 kcal (2) G-P(sol) polarization free energy of solvation -32.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds