Wall clock time and date at job start Tue Mar 31 2020 15:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47018 * 2 1 4 4 H 1.09007 * 109.46647 * 56.48802 * 3 2 1 5 5 C 1.50696 * 109.47146 * 176.48313 * 3 2 1 6 6 O 1.21299 * 119.99838 * 102.54472 * 5 3 2 7 7 N 1.34780 * 120.00533 * 282.54154 * 5 3 2 8 8 C 1.37088 * 120.00183 * 185.28009 * 7 5 3 9 9 H 1.08002 * 120.00618 * 321.34460 * 8 7 5 10 10 C 1.38947 * 119.99933 * 141.34876 * 8 7 5 11 11 N 1.31416 * 120.00341 * 157.64758 * 10 8 7 12 12 Si 1.86801 * 120.00040 * 337.64024 * 10 8 7 13 13 H 1.48505 * 109.46772 * 91.15448 * 12 10 8 14 14 H 1.48494 * 109.47349 * 211.14924 * 12 10 8 15 15 H 1.48497 * 109.47102 * 331.15593 * 12 10 8 16 16 C 1.46506 * 119.99453 * 5.56254 * 7 5 3 17 17 C 1.50697 * 109.47293 * 95.85487 * 16 7 5 18 18 O 1.20819 * 120.00019 * 359.03173 * 17 16 7 19 19 O 1.34227 * 119.99801 * 179.03546 * 17 16 7 20 20 N 1.46899 * 109.47269 * 296.48844 * 3 2 1 21 21 C 1.47012 * 110.99626 * 298.63263 * 20 3 2 22 22 C 1.53106 * 109.25397 * 177.61074 * 21 20 3 23 23 O 1.43005 * 109.25950 * 56.84702 * 22 21 20 24 24 C 1.43018 * 113.74164 * 301.32765 * 23 22 21 25 25 H 1.09000 * 109.50771 * 298.74063 * 24 23 22 26 26 C 1.53001 * 109.54467 * 178.62844 * 24 23 22 27 27 C 1.53001 * 109.47063 * 65.19273 * 26 24 23 28 28 C 1.47014 * 110.99894 * 174.99767 * 20 3 2 29 29 H 1.09004 * 109.46759 * 60.00190 * 1 2 3 30 30 H 1.09004 * 109.46885 * 179.97438 * 1 2 3 31 31 H 1.08989 * 109.47292 * 299.99983 * 1 2 3 32 32 H 1.09002 * 109.47553 * 240.00095 * 2 1 3 33 33 H 1.09002 * 109.47274 * 119.99743 * 2 1 3 34 34 H 0.96999 * 120.00480 * 180.02562 * 11 10 8 35 35 H 1.08998 * 109.46365 * 215.85701 * 16 7 5 36 36 H 1.08997 * 109.47073 * 335.84951 * 16 7 5 37 37 H 0.96701 * 117.00050 * 179.97438 * 19 17 16 38 38 H 1.08997 * 109.50749 * 297.53708 * 21 20 3 39 39 H 1.08999 * 109.51086 * 57.67563 * 21 20 3 40 40 H 1.09005 * 109.50259 * 296.90656 * 22 21 20 41 41 H 1.09002 * 109.50258 * 176.78373 * 22 21 20 42 42 H 1.08994 * 109.46968 * 185.19720 * 26 24 23 43 43 H 1.09003 * 109.46686 * 305.19719 * 26 24 23 44 44 H 1.08998 * 109.46853 * 179.97438 * 27 26 24 45 45 H 1.08999 * 109.47546 * 300.00799 * 27 26 24 46 46 H 1.08999 * 109.46535 * 60.00556 * 27 26 24 47 47 H 1.09000 * 109.50903 * 302.32421 * 28 20 3 48 48 H 1.09002 * 109.50631 * 62.41797 * 28 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6261 1.9742 0.8569 5 6 3.5444 1.4435 0.0872 6 8 4.2093 1.6510 -0.9059 7 7 4.1513 1.2138 1.2685 8 6 5.5140 1.3213 1.3714 9 1 6.1454 0.9754 0.5663 10 6 6.0831 1.8751 2.5116 11 7 7.3288 1.5978 2.8254 12 14 5.0776 3.0141 3.5984 13 1 4.3994 2.2198 4.6541 14 1 5.9746 4.0142 4.2310 15 1 4.0595 3.7135 2.7742 16 6 3.3550 0.8432 2.4411 17 6 3.3420 -0.6567 2.5859 18 8 3.9222 -1.3464 1.7812 19 8 2.6857 -1.2265 3.6088 20 7 1.6208 2.1102 -1.2396 21 6 2.1882 1.4381 -2.4176 22 6 1.6793 2.1279 -3.6862 23 8 2.0207 3.5158 -3.6378 24 6 1.4839 4.2016 -2.5034 25 1 0.3953 4.1554 -2.5317 26 6 1.9341 5.6636 -2.5289 27 6 1.3241 6.3639 -3.7448 28 6 1.9908 3.5329 -1.2228 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 7.7259 1.9841 3.6216 35 1 3.7926 1.2907 3.3335 36 1 2.3344 1.2052 2.3164 37 1 2.7053 -2.1920 3.6597 38 1 3.2759 1.4981 -2.3822 39 1 1.8806 0.3925 -2.4235 40 1 0.5963 2.0213 -3.7490 41 1 2.1420 1.6695 -4.5603 42 1 1.6022 6.1619 -1.6181 43 1 3.0214 5.7079 -2.5917 44 1 1.6445 7.4056 -3.7627 45 1 1.6559 5.8655 -4.6556 46 1 0.2368 6.3196 -3.6819 47 1 1.5392 4.0163 -0.3565 48 1 3.0754 3.6262 -1.1675 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001595484121.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:42 Heat of formation + Delta-G solvation = -163.617571 kcal Electronic energy + Delta-G solvation = -31262.245760 eV Core-core repulsion = 27124.581557 eV Total energy + Delta-G solvation = -4137.664203 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.10552 -41.06053 -39.83579 -37.57949 -37.02061 -36.54777 -34.89113 -34.40959 -33.59539 -30.91844 -29.81880 -29.42947 -27.44241 -25.76392 -25.00914 -23.27177 -23.10821 -22.25174 -21.52977 -20.31044 -19.28312 -19.21168 -18.47844 -17.79034 -17.65677 -17.38773 -17.06007 -16.74928 -16.33812 -15.79356 -15.74606 -15.62992 -15.28521 -15.06560 -14.65838 -14.52100 -14.33327 -14.24104 -14.09908 -13.91868 -13.77517 -13.19680 -12.99178 -12.93710 -12.82381 -12.62918 -12.50929 -12.36320 -12.17797 -12.05573 -11.95312 -11.86811 -11.79142 -11.70721 -11.63901 -11.26685 -11.12114 -10.91101 -10.51016 -9.94266 -9.07433 -8.57689 -6.24196 1.10535 1.14484 1.27923 1.41264 1.54253 2.04992 2.13224 2.54906 2.68711 2.89792 2.90679 3.54962 3.66891 3.84012 3.88598 3.97631 4.02375 4.10006 4.15434 4.21284 4.35371 4.40896 4.42570 4.46427 4.51097 4.56034 4.59049 4.66911 4.74847 4.86757 4.99795 5.03400 5.11412 5.12961 5.20637 5.24112 5.33707 5.39832 5.46009 5.50956 5.61063 5.78773 5.89159 6.00088 6.31276 6.38057 6.83798 6.99747 7.14152 7.68089 8.60114 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.012753 B = 0.005071 C = 0.004177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.991843 B = 5520.653268 C = 6701.297029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.109 4.109 3 C 0.069 3.931 4 H 0.125 0.875 5 C 0.447 3.553 6 O -0.584 6.584 7 N -0.459 5.459 8 C -0.332 4.332 9 H 0.033 0.967 10 C 0.009 3.991 11 N -0.908 5.908 12 Si 0.932 3.068 13 H -0.225 1.225 14 H -0.280 1.280 15 H -0.243 1.243 16 C 0.084 3.916 17 C 0.468 3.532 18 O -0.532 6.532 19 O -0.504 6.504 20 N -0.483 5.483 21 C -0.020 4.020 22 C 0.074 3.926 23 O -0.401 6.401 24 C 0.102 3.898 25 H 0.083 0.917 26 C -0.118 4.118 27 C -0.140 4.140 28 C 0.010 3.990 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.050 0.950 33 H 0.056 0.944 34 H 0.281 0.719 35 H 0.107 0.893 36 H 0.155 0.845 37 H 0.426 0.574 38 H 0.062 0.938 39 H 0.083 0.917 40 H 0.073 0.927 41 H 0.100 0.900 42 H 0.095 0.905 43 H 0.046 0.954 44 H 0.064 0.936 45 H 0.046 0.954 46 H 0.067 0.933 47 H 0.100 0.900 48 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.149 3.141 -1.138 21.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.148 4.148 3 C -0.044 4.044 4 H 0.143 0.857 5 C 0.237 3.763 6 O -0.466 6.466 7 N -0.181 5.181 8 C -0.460 4.460 9 H 0.051 0.949 10 C -0.194 4.194 11 N -0.545 5.545 12 Si 0.753 3.247 13 H -0.150 1.150 14 H -0.207 1.207 15 H -0.166 1.166 16 C -0.040 4.040 17 C 0.309 3.691 18 O -0.421 6.421 19 O -0.317 6.317 20 N -0.206 5.206 21 C -0.148 4.148 22 C -0.002 4.002 23 O -0.320 6.320 24 C 0.045 3.955 25 H 0.101 0.899 26 C -0.156 4.156 27 C -0.197 4.197 28 C -0.119 4.119 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.125 0.875 36 H 0.173 0.827 37 H 0.287 0.713 38 H 0.080 0.920 39 H 0.102 0.898 40 H 0.091 0.909 41 H 0.118 0.882 42 H 0.113 0.887 43 H 0.065 0.935 44 H 0.083 0.917 45 H 0.065 0.935 46 H 0.086 0.914 47 H 0.118 0.882 48 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -20.894 3.545 -1.947 21.281 hybrid contribution 2.097 -0.819 0.690 2.355 sum -18.796 2.725 -1.257 19.034 Atomic orbital electron populations 1.21604 0.91168 1.02244 1.03603 1.21592 0.99498 0.92019 1.01659 1.22092 0.87587 0.98844 0.95874 0.85736 1.22625 0.92358 0.78299 0.83035 1.90413 1.68149 1.53024 1.35058 1.43561 1.05808 1.60347 1.08424 1.18464 0.80811 1.41742 1.04964 0.94948 1.26256 0.97166 0.97352 0.98577 1.69905 1.16615 1.41354 1.26588 0.86108 0.79692 0.79599 0.79300 1.15023 1.20652 1.16581 1.21839 1.00725 0.88685 0.92767 1.24094 0.74341 0.92795 0.77903 1.90744 1.42079 1.65182 1.44119 1.84476 1.68877 1.30718 1.47648 1.62835 1.55172 1.01910 1.00697 1.23357 1.01386 0.98942 0.91117 1.22653 1.00266 0.80768 0.96548 1.87936 1.76509 1.22192 1.45355 1.22236 0.97870 0.92012 0.83403 0.89907 1.21578 1.00678 0.92430 1.00919 1.21636 1.01110 0.99990 0.96979 1.22989 0.98819 0.89312 1.00734 0.91244 0.91884 0.90947 0.93097 0.92539 0.90879 0.87541 0.82732 0.71254 0.92008 0.89838 0.90903 0.88180 0.88668 0.93484 0.91706 0.93462 0.91444 0.88171 0.96467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.51 9.79 71.98 0.70 -1.81 16 2 C -0.11 -3.12 4.98 30.60 0.15 -2.96 16 3 C 0.07 2.21 1.34 44.17 0.06 2.27 16 4 H 0.13 3.28 6.65 -2.38 -0.02 3.26 16 5 C 0.45 20.47 6.09 87.66 0.53 21.00 16 6 O -0.58 -32.01 11.82 -3.09 -0.04 -32.05 16 7 N -0.46 -22.01 1.69 -639.60 -1.08 -23.09 16 8 C -0.33 -19.75 9.18 84.04 0.77 -18.98 16 9 H 0.03 2.34 7.89 -2.91 -0.02 2.32 16 10 C 0.01 0.50 5.32 84.92 0.45 0.95 16 11 N -0.91 -54.47 13.96 21.66 0.30 -54.17 16 12 Si 0.93 38.72 25.28 68.60 1.73 40.45 16 13 H -0.23 -7.83 6.48 99.48 0.64 -7.18 16 14 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 15 H -0.24 -9.38 7.11 99.48 0.71 -8.68 16 16 C 0.08 3.10 4.54 85.63 0.39 3.48 16 17 C 0.47 16.86 6.29 71.24 0.45 17.31 16 18 O -0.53 -24.26 16.59 21.99 0.36 -23.90 16 19 O -0.50 -12.53 13.42 -51.39 -0.69 -13.22 16 20 N -0.48 -14.71 4.10 -874.34 -3.59 -18.30 16 21 C -0.02 -0.68 4.92 86.32 0.42 -0.25 16 22 C 0.07 2.05 7.01 72.02 0.50 2.55 16 23 O -0.40 -12.45 10.02 -148.98 -1.49 -13.95 16 24 C 0.10 2.71 2.80 30.63 0.09 2.79 16 25 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 26 C -0.12 -2.75 5.65 30.59 0.17 -2.57 16 27 C -0.14 -2.68 9.81 71.98 0.71 -1.98 16 28 C 0.01 0.31 4.61 86.31 0.40 0.70 16 29 H 0.07 1.36 7.71 -2.39 -0.02 1.34 16 30 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 31 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.05 1.65 6.21 -2.39 -0.01 1.63 16 33 H 0.06 1.69 4.39 -2.39 -0.01 1.68 16 34 H 0.28 15.34 8.31 -92.71 -0.77 14.57 16 35 H 0.11 3.93 3.08 -2.39 -0.01 3.93 16 36 H 0.16 4.06 5.62 -2.39 -0.01 4.04 16 37 H 0.43 6.77 9.10 -74.06 -0.67 6.09 16 38 H 0.06 2.76 4.83 -13.37 -0.06 2.70 16 39 H 0.08 2.60 6.15 -2.39 -0.01 2.59 16 40 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 41 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 42 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.05 1.04 7.83 -2.39 -0.02 1.02 16 46 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 47 H 0.10 2.57 8.13 -2.39 -0.02 2.55 16 48 H 0.02 0.70 6.48 -2.39 -0.02 0.69 16 Total: -1.00 -82.33 365.55 1.52 -80.81 By element: Atomic # 1 Polarization: 34.71 SS G_CDS: 0.20 Total: 34.91 kcal Atomic # 6 Polarization: 16.70 SS G_CDS: 5.80 Total: 22.50 kcal Atomic # 7 Polarization: -91.19 SS G_CDS: -4.36 Total: -95.56 kcal Atomic # 8 Polarization: -81.27 SS G_CDS: -1.85 Total: -83.12 kcal Atomic # 14 Polarization: 38.72 SS G_CDS: 1.73 Total: 40.45 kcal Total: -82.33 1.52 -80.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595484121.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.809 kcal (2) G-P(sol) polarization free energy of solvation -82.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds