Wall clock time and date at job start Tue Mar 31 2020 15:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47038 * 2 1 4 4 H 1.09006 * 109.46556 * 185.73645 * 3 2 1 5 5 C 1.50697 * 109.47284 * 305.73706 * 3 2 1 6 6 O 1.21298 * 120.00136 * 92.16031 * 5 3 2 7 7 N 1.34775 * 119.99976 * 272.43991 * 5 3 2 8 8 C 1.37096 * 120.00029 * 183.89145 * 7 5 3 9 9 H 1.08004 * 119.99838 * 19.39250 * 8 7 5 10 10 C 1.38952 * 120.00047 * 199.39710 * 8 7 5 11 11 N 1.31411 * 120.00009 * 10.44779 * 10 8 7 12 12 Si 1.86799 * 119.99939 * 190.45023 * 10 8 7 13 13 H 1.48503 * 109.47324 * 59.99636 * 12 10 8 14 14 H 1.48502 * 109.47475 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.47385 * 299.99913 * 12 10 8 16 16 C 1.46498 * 120.00287 * 3.89160 * 7 5 3 17 17 C 1.50706 * 109.46946 * 89.28677 * 16 7 5 18 18 O 1.20823 * 120.00432 * 0.02562 * 17 16 7 19 19 O 1.34228 * 119.99819 * 180.02562 * 17 16 7 20 20 N 1.46898 * 109.47436 * 65.74074 * 3 2 1 21 21 C 1.47018 * 110.99947 * 59.28170 * 20 3 2 22 22 C 1.53094 * 109.25509 * 182.39296 * 21 20 3 23 23 O 1.43015 * 109.26198 * 303.15140 * 22 21 20 24 24 C 1.43016 * 113.73784 * 58.66959 * 23 22 21 25 25 H 1.09003 * 109.50364 * 61.30924 * 24 23 22 26 26 C 1.52994 * 109.50888 * 181.39419 * 24 23 22 27 27 C 1.53004 * 109.47105 * 295.00577 * 26 24 23 28 28 C 1.47011 * 110.99971 * 182.91886 * 20 3 2 29 29 H 1.09000 * 109.47125 * 306.83368 * 1 2 3 30 30 H 1.09007 * 109.46778 * 66.82779 * 1 2 3 31 31 H 1.08995 * 109.47434 * 186.83151 * 1 2 3 32 32 H 1.08994 * 109.47040 * 239.99852 * 2 1 3 33 33 H 1.08998 * 109.46786 * 119.99923 * 2 1 3 34 34 H 0.96997 * 119.99579 * 180.02562 * 11 10 8 35 35 H 1.08997 * 109.47507 * 209.28634 * 16 7 5 36 36 H 1.09000 * 109.47212 * 329.28910 * 16 7 5 37 37 H 0.96702 * 116.99877 * 180.02562 * 19 17 16 38 38 H 1.08999 * 109.50861 * 302.32811 * 21 20 3 39 39 H 1.08998 * 109.50669 * 62.41662 * 21 20 3 40 40 H 1.09008 * 109.50700 * 63.08928 * 22 21 20 41 41 H 1.09000 * 109.50734 * 183.17061 * 22 21 20 42 42 H 1.09004 * 109.46928 * 55.00019 * 26 24 23 43 43 H 1.08998 * 109.47659 * 175.00291 * 26 24 23 44 44 H 1.08993 * 109.47696 * 59.99742 * 27 26 24 45 45 H 1.09003 * 109.46935 * 180.02562 * 27 26 24 46 46 H 1.08998 * 109.46959 * 299.99136 * 27 26 24 47 47 H 1.08997 * 109.50628 * 297.53928 * 28 20 3 48 48 H 1.08993 * 109.50908 * 57.67371 * 28 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1252 1.4441 -0.1027 5 6 1.4251 2.1927 -1.1532 6 8 0.3939 2.8113 -0.9936 7 7 2.0178 2.1718 -2.3635 8 6 1.5030 2.9181 -3.3919 9 1 0.8405 3.7444 -3.1804 10 6 1.8337 2.6113 -4.7062 11 7 2.4668 1.4930 -4.9805 12 14 1.3782 3.7888 -6.0830 13 1 2.0291 5.1025 -5.8465 14 1 1.8398 3.2348 -7.3812 15 1 -0.0958 3.9656 -6.1158 16 6 3.2121 1.3515 -2.5801 17 6 2.7998 -0.0295 -3.0208 18 8 1.6286 -0.3006 -3.1419 19 8 3.7338 -0.9584 -3.2787 20 7 1.6667 2.0939 1.2626 21 6 2.2362 1.3778 2.4134 22 6 1.7746 2.0533 3.7073 23 8 2.1581 3.4309 3.6831 24 6 1.6205 4.1588 2.5756 25 1 0.5317 4.1461 2.6258 26 6 2.1174 5.6050 2.6251 27 6 1.5583 6.2939 3.8716 28 6 2.0806 3.5045 1.2702 29 1 -0.3633 0.6161 0.8225 30 1 -0.3633 0.4044 -0.9448 31 1 -0.3634 -1.0203 0.1222 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.6979 1.2791 -5.8980 35 1 3.8321 1.8089 -3.3511 36 1 3.7788 1.2825 -1.6516 37 1 3.4210 -1.8295 -3.5588 38 1 1.8964 0.3422 2.4022 39 1 3.3244 1.4043 2.3564 40 1 0.6902 1.9788 3.7900 41 1 2.2394 1.5604 4.5612 42 1 3.2067 5.6138 2.6630 43 1 1.7804 6.1357 1.7347 44 1 1.8952 5.7633 4.7621 45 1 1.9119 7.3244 3.9066 46 1 0.4690 6.2852 3.8338 47 1 3.1662 3.5657 1.1953 48 1 1.6270 4.0214 0.4245 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001595484123.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:48 Heat of formation + Delta-G solvation = -147.027197 kcal Electronic energy + Delta-G solvation = -31249.886813 eV Core-core repulsion = 27112.942023 eV Total energy + Delta-G solvation = -4136.944790 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.17811 -39.20519 -38.16885 -35.99562 -35.09480 -34.36881 -33.85156 -32.52826 -31.61727 -29.87147 -27.97585 -27.56900 -25.59834 -24.41465 -23.83287 -22.00269 -21.20367 -20.86514 -20.26715 -18.51810 -17.10848 -16.95032 -16.43705 -16.36410 -16.17444 -15.61572 -15.21832 -14.84300 -14.76234 -14.46406 -14.22804 -14.03800 -13.74238 -13.56344 -13.45248 -13.10171 -12.84781 -12.50043 -12.27749 -11.91569 -11.82265 -11.63677 -11.58353 -11.44530 -11.17395 -11.09422 -10.98413 -10.97715 -10.89675 -10.60543 -10.52960 -10.44936 -10.30218 -10.17606 -10.08938 -9.54250 -9.42447 -9.06784 -8.44855 -7.95715 -7.90935 -6.45323 -3.96808 3.14332 3.21026 3.24238 3.49592 3.68501 3.76451 3.88500 4.15575 4.28544 4.66656 4.92134 5.03496 5.06934 5.12073 5.19196 5.24297 5.31488 5.34830 5.42152 5.53676 5.58074 5.60538 5.78067 5.79273 5.81722 5.92641 5.93604 5.98067 6.00740 6.07520 6.20005 6.23378 6.32867 6.36309 6.44276 6.50687 6.62300 6.72835 7.04783 7.17389 7.22383 7.36346 7.47677 7.58234 7.97657 8.35311 9.06688 9.11056 9.28866 9.82433 10.62861 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.013824 B = 0.004587 C = 0.003779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.021868 B = 6103.364140 C = 7406.615235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.108 4.108 3 C 0.070 3.930 4 H 0.047 0.953 5 C 0.473 3.527 6 O -0.552 6.552 7 N -0.436 5.436 8 C -0.295 4.295 9 H 0.105 0.895 10 C 0.030 3.970 11 N -0.894 5.894 12 Si 0.937 3.063 13 H -0.274 1.274 14 H -0.285 1.285 15 H -0.273 1.273 16 C 0.149 3.851 17 C 0.497 3.503 18 O -0.502 6.502 19 O -0.538 6.538 20 N -0.507 5.507 21 C 0.013 3.987 22 C 0.069 3.931 23 O -0.385 6.385 24 C 0.098 3.902 25 H 0.068 0.932 26 C -0.116 4.116 27 C -0.146 4.146 28 C 0.023 3.977 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.038 0.962 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.272 0.728 35 H 0.126 0.874 36 H 0.069 0.931 37 H 0.390 0.610 38 H 0.088 0.912 39 H 0.038 0.962 40 H 0.057 0.943 41 H 0.093 0.907 42 H 0.067 0.933 43 H 0.079 0.921 44 H 0.059 0.941 45 H 0.051 0.949 46 H 0.052 0.948 47 H 0.034 0.966 48 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.643 -0.548 12.148 13.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.146 4.146 3 C -0.041 4.041 4 H 0.064 0.936 5 C 0.261 3.739 6 O -0.433 6.433 7 N -0.156 5.156 8 C -0.423 4.423 9 H 0.122 0.878 10 C -0.172 4.172 11 N -0.535 5.535 12 Si 0.764 3.236 13 H -0.199 1.199 14 H -0.210 1.210 15 H -0.199 1.199 16 C 0.022 3.978 17 C 0.337 3.663 18 O -0.387 6.387 19 O -0.349 6.349 20 N -0.233 5.233 21 C -0.115 4.115 22 C -0.009 4.009 23 O -0.304 6.304 24 C 0.040 3.960 25 H 0.086 0.914 26 C -0.154 4.154 27 C -0.203 4.203 28 C -0.105 4.105 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.057 0.943 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.143 0.857 36 H 0.087 0.913 37 H 0.246 0.754 38 H 0.106 0.894 39 H 0.056 0.944 40 H 0.076 0.924 41 H 0.111 0.889 42 H 0.086 0.914 43 H 0.097 0.903 44 H 0.078 0.922 45 H 0.070 0.930 46 H 0.071 0.929 47 H 0.052 0.948 48 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 3.576 0.100 12.301 12.810 hybrid contribution 0.484 -0.572 -1.576 1.745 sum 4.059 -0.473 10.725 11.477 Atomic orbital electron populations 1.21576 0.94234 0.99858 1.03674 1.21524 0.98417 0.93179 1.01497 1.21719 0.97187 0.95480 0.89746 0.93558 1.19670 0.85540 0.84825 0.83869 1.90536 1.23162 1.46022 1.83573 1.43424 1.23641 1.39206 1.09379 1.19648 1.28428 1.09977 0.84206 0.87774 1.25239 0.97061 0.96344 0.98511 1.69431 1.41487 1.21888 1.20710 0.85814 0.79149 0.79539 0.79099 1.19912 1.21000 1.19854 1.20646 0.89661 0.86685 1.00801 1.23504 0.83836 0.86003 0.72942 1.90601 1.19856 1.79674 1.48565 1.84517 1.43895 1.25029 1.81478 1.61874 1.58887 1.01594 1.00908 1.22882 0.97591 0.99390 0.91680 1.22572 0.99898 0.81981 0.96406 1.87915 1.74045 1.21242 1.47238 1.22181 0.97889 0.91079 0.84836 0.91424 1.21519 1.01420 0.93155 0.99275 1.21686 1.00807 0.99702 0.98154 1.22874 0.98250 0.89590 0.99825 0.91740 0.91735 0.94308 0.91373 0.92129 0.91736 0.85670 0.91301 0.75390 0.89376 0.94379 0.92434 0.88880 0.91385 0.90291 0.92163 0.92962 0.92881 0.94809 0.88032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 9.18 37.16 0.34 -2.24 16 2 C -0.11 -1.91 5.49 -26.73 -0.15 -2.05 16 3 C 0.07 1.31 1.49 -68.87 -0.10 1.21 16 4 H 0.05 0.82 6.04 -51.93 -0.31 0.51 16 5 C 0.47 11.02 4.64 -10.99 -0.05 10.97 16 6 O -0.55 -14.51 14.36 5.54 0.08 -14.43 16 7 N -0.44 -10.64 2.11 -116.09 -0.25 -10.89 16 8 C -0.30 -7.89 9.34 -14.93 -0.14 -8.03 16 9 H 0.10 2.90 7.39 -52.48 -0.39 2.51 16 10 C 0.03 0.76 5.14 -17.47 -0.09 0.67 16 11 N -0.89 -22.95 8.28 55.50 0.46 -22.50 16 12 Si 0.94 20.54 29.57 -169.99 -5.03 15.51 16 13 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 14 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 15 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 16 C 0.15 3.20 5.08 -5.19 -0.03 3.18 16 17 C 0.50 10.85 4.50 36.01 0.16 11.02 16 18 O -0.50 -12.71 15.56 -18.75 -0.29 -13.00 16 19 O -0.54 -9.67 13.42 -39.25 -0.53 -10.20 16 20 N -0.51 -8.60 3.71 -227.73 -0.85 -9.44 16 21 C 0.01 0.17 5.33 -3.71 -0.02 0.15 16 22 C 0.07 0.84 7.01 37.21 0.26 1.10 16 23 O -0.39 -5.42 10.01 -35.23 -0.35 -5.77 16 24 C 0.10 1.41 2.80 -26.68 -0.07 1.34 16 25 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 26 C -0.12 -1.43 5.65 -26.73 -0.15 -1.58 16 27 C -0.15 -1.57 9.81 37.16 0.36 -1.20 16 28 C 0.02 0.38 4.55 -3.71 -0.02 0.36 16 29 H 0.06 1.21 7.60 -51.93 -0.39 0.82 16 30 H 0.06 1.50 7.07 -51.93 -0.37 1.13 16 31 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 1.30 4.98 -51.93 -0.26 1.04 16 33 H 0.06 0.88 6.05 -51.93 -0.31 0.57 16 34 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 35 H 0.13 2.81 6.59 -51.93 -0.34 2.47 16 36 H 0.07 1.25 5.80 -51.93 -0.30 0.95 16 37 H 0.39 5.44 9.10 45.56 0.41 5.85 16 38 H 0.09 1.09 6.05 -51.93 -0.31 0.77 16 39 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 41 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.06 0.66 7.82 -51.93 -0.41 0.26 16 45 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.10 1.99 6.10 -51.93 -0.32 1.67 16 LS Contribution 368.67 15.07 5.56 5.56 Total: -1.00 -31.70 368.67 -7.55 -39.25 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: -6.66 Total: 11.01 kcal Atomic # 6 Polarization: 14.59 SS G_CDS: 0.31 Total: 14.90 kcal Atomic # 7 Polarization: -42.19 SS G_CDS: -0.63 Total: -42.82 kcal Atomic # 8 Polarization: -42.31 SS G_CDS: -1.09 Total: -43.40 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.03 Total: 15.51 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.70 -7.55 -39.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595484123.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.775 kcal (2) G-P(sol) polarization free energy of solvation -31.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds