Wall clock time and date at job start Tue Mar 31 2020 15:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.47059 * 2 1 4 4 H 1.09000 * 109.46837 * 182.94648 * 3 2 1 5 5 C 1.50695 * 109.46771 * 62.94751 * 3 2 1 6 6 O 1.21295 * 119.99912 * 262.16137 * 5 3 2 7 7 N 1.34777 * 120.00084 * 82.16136 * 5 3 2 8 8 C 1.37097 * 119.99983 * 5.36049 * 7 5 3 9 9 H 1.08001 * 119.99706 * 343.90419 * 8 7 5 10 10 C 1.38947 * 120.00008 * 163.91052 * 8 7 5 11 11 N 1.31405 * 120.00403 * 356.76193 * 10 8 7 12 12 Si 1.86808 * 119.99807 * 176.75618 * 10 8 7 13 13 H 1.48497 * 109.46664 * 90.00248 * 12 10 8 14 14 H 1.48497 * 109.47048 * 209.99774 * 12 10 8 15 15 H 1.48497 * 109.47100 * 330.00343 * 12 10 8 16 16 C 1.46500 * 120.00142 * 185.35239 * 7 5 3 17 17 C 1.50703 * 109.47296 * 266.63875 * 16 7 5 18 18 O 1.20824 * 119.99990 * 359.97438 * 17 16 7 19 19 O 1.34224 * 119.99777 * 179.97438 * 17 16 7 20 20 N 1.46903 * 109.47032 * 302.94603 * 3 2 1 21 21 C 1.47007 * 111.00169 * 305.32328 * 20 3 2 22 22 C 1.53093 * 109.25860 * 177.60582 * 21 20 3 23 23 O 1.43016 * 109.25697 * 56.85292 * 22 21 20 24 24 C 1.43026 * 113.77361 * 301.35218 * 23 22 21 25 25 H 1.08998 * 109.46740 * 298.68929 * 24 23 22 26 26 C 1.52998 * 109.54499 * 178.55987 * 24 23 22 27 27 C 1.53003 * 109.47472 * 65.19838 * 26 24 23 28 28 C 1.47011 * 110.99660 * 181.68557 * 20 3 2 29 29 H 1.08997 * 109.46794 * 294.59934 * 1 2 3 30 30 H 1.09002 * 109.46925 * 54.60187 * 1 2 3 31 31 H 1.09006 * 109.46886 * 174.60459 * 1 2 3 32 32 H 1.09001 * 109.47290 * 240.00292 * 2 1 3 33 33 H 1.08997 * 109.47370 * 120.00386 * 2 1 3 34 34 H 0.96994 * 120.00628 * 180.02562 * 11 10 8 35 35 H 1.09003 * 109.47084 * 26.63647 * 16 7 5 36 36 H 1.09002 * 109.47228 * 146.63724 * 16 7 5 37 37 H 0.96706 * 116.99925 * 180.02562 * 19 17 16 38 38 H 1.08993 * 109.51239 * 297.54586 * 21 20 3 39 39 H 1.09006 * 109.50667 * 57.67526 * 21 20 3 40 40 H 1.08998 * 109.51011 * 176.78539 * 22 21 20 41 41 H 1.08998 * 109.50928 * 296.91373 * 22 21 20 42 42 H 1.09003 * 109.47043 * 185.19569 * 26 24 23 43 43 H 1.09005 * 109.47258 * 305.19878 * 26 24 23 44 44 H 1.08993 * 109.46975 * 59.99403 * 27 26 24 45 45 H 1.08990 * 109.47318 * 180.02562 * 27 26 24 46 46 H 1.09003 * 109.46767 * 299.99900 * 27 26 24 47 47 H 1.08997 * 109.51148 * 302.33016 * 28 20 3 48 48 H 1.09006 * 109.50513 * 62.42127 * 28 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1288 1.4430 -0.0528 5 6 1.5982 2.1314 1.2653 6 8 0.6121 2.8377 1.2588 7 7 2.2987 1.9628 2.4043 8 6 3.4729 1.2553 2.3885 9 1 3.7094 0.6202 1.5476 10 6 4.3587 1.3552 3.4544 11 7 4.1014 2.1760 4.4478 12 14 5.9152 0.3225 3.4753 13 1 7.0144 1.0708 2.8144 14 1 6.2934 0.0257 4.8803 15 1 5.6750 -0.9496 2.7479 16 6 1.8056 2.5357 3.6593 17 6 2.4195 3.8964 3.8658 18 8 3.1902 4.3418 3.0488 19 8 2.1100 4.6136 4.9573 20 7 1.4931 2.1553 -1.1623 21 6 1.7979 1.4403 -2.4101 22 6 1.1602 2.1837 -3.5867 23 8 1.6354 3.5325 -3.6057 24 6 1.3559 4.2592 -2.4060 25 1 0.2773 4.3178 -2.2597 26 6 1.9348 5.6711 -2.5162 27 6 1.2081 6.4353 -3.6248 28 6 1.9945 3.5361 -1.2173 29 1 -0.3633 0.4278 0.9344 30 1 -0.3633 0.5953 -0.8377 31 1 -0.3633 -1.0232 -0.0966 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 4.7199 2.2460 5.1917 35 1 0.7206 2.6297 3.6141 36 1 2.0797 1.8838 4.4888 37 1 2.5285 5.4809 5.0460 38 1 2.8779 1.3960 -2.5498 39 1 1.3953 0.4286 -2.3576 40 1 1.4311 1.6892 -4.5196 41 1 0.0761 2.1812 -3.4744 42 1 1.8026 6.1930 -1.5684 43 1 2.9972 5.6108 -2.7528 44 1 0.1458 6.4956 -3.3883 45 1 1.6208 7.4410 -3.7036 46 1 1.3403 5.9134 -4.5726 47 1 1.7356 4.0545 -0.2941 48 1 3.0779 3.5254 -1.3372 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001595484124.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:52 Heat of formation + Delta-G solvation = -151.855452 kcal Electronic energy + Delta-G solvation = -31151.129651 eV Core-core repulsion = 27013.975492 eV Total energy + Delta-G solvation = -4137.154159 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.01292 -39.08279 -38.13876 -35.95578 -34.99131 -34.42722 -33.77907 -32.39713 -31.51921 -29.82391 -28.46202 -27.25009 -25.13505 -24.51263 -23.86530 -21.98017 -21.29421 -20.44948 -19.87082 -19.00483 -17.18360 -16.81089 -16.37889 -16.23082 -15.93072 -15.44308 -15.09720 -14.73430 -14.60046 -14.39671 -14.28367 -13.95088 -13.71711 -13.52913 -13.32411 -13.04118 -12.86901 -12.51708 -12.28453 -11.80632 -11.75324 -11.61093 -11.46893 -11.37625 -11.14248 -11.08009 -10.99517 -10.90244 -10.82924 -10.74373 -10.57096 -10.44415 -10.22492 -10.17953 -10.07043 -9.54405 -9.33899 -9.05875 -8.50267 -8.04014 -7.80675 -6.51498 -4.08330 3.03995 3.12534 3.14914 3.57568 3.78471 3.91639 3.98723 4.10753 4.32520 4.72243 4.96564 5.06887 5.16011 5.22651 5.30498 5.37673 5.40784 5.50522 5.57792 5.61279 5.67308 5.74201 5.85107 5.89842 6.00808 6.05786 6.06834 6.08438 6.19744 6.26408 6.31798 6.36130 6.38547 6.40485 6.46725 6.64721 6.72888 6.82936 6.87929 7.19994 7.32482 7.38948 7.48336 7.54371 7.73357 8.20106 8.93361 9.29205 9.35063 9.73002 10.52895 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.012166 B = 0.004765 C = 0.004189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.905134 B = 5874.559568 C = 6682.035957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.111 4.111 3 C 0.083 3.917 4 H 0.062 0.938 5 C 0.482 3.518 6 O -0.580 6.580 7 N -0.435 5.435 8 C -0.320 4.320 9 H 0.102 0.898 10 C 0.037 3.963 11 N -0.888 5.888 12 Si 0.933 3.067 13 H -0.278 1.278 14 H -0.281 1.281 15 H -0.269 1.269 16 C 0.162 3.838 17 C 0.509 3.491 18 O -0.524 6.524 19 O -0.536 6.536 20 N -0.509 5.509 21 C 0.013 3.987 22 C 0.069 3.931 23 O -0.386 6.386 24 C 0.099 3.901 25 H 0.066 0.934 26 C -0.116 4.116 27 C -0.145 4.145 28 C 0.027 3.973 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.040 0.960 32 H 0.060 0.940 33 H 0.077 0.923 34 H 0.273 0.727 35 H 0.075 0.925 36 H 0.130 0.870 37 H 0.387 0.613 38 H 0.037 0.963 39 H 0.088 0.912 40 H 0.092 0.908 41 H 0.056 0.944 42 H 0.078 0.922 43 H 0.068 0.932 44 H 0.052 0.948 45 H 0.051 0.949 46 H 0.059 0.941 47 H 0.098 0.902 48 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.759 -0.869 -8.491 9.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.149 4.149 3 C -0.028 4.028 4 H 0.080 0.920 5 C 0.270 3.730 6 O -0.464 6.464 7 N -0.155 5.155 8 C -0.447 4.447 9 H 0.120 0.880 10 C -0.165 4.165 11 N -0.529 5.529 12 Si 0.760 3.240 13 H -0.204 1.204 14 H -0.206 1.206 15 H -0.194 1.194 16 C 0.037 3.963 17 C 0.350 3.650 18 O -0.411 6.411 19 O -0.347 6.347 20 N -0.235 5.235 21 C -0.115 4.115 22 C -0.008 4.008 23 O -0.305 6.305 24 C 0.041 3.959 25 H 0.084 0.916 26 C -0.154 4.154 27 C -0.203 4.203 28 C -0.101 4.101 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.059 0.941 32 H 0.079 0.921 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.147 0.853 37 H 0.242 0.758 38 H 0.056 0.944 39 H 0.106 0.894 40 H 0.110 0.890 41 H 0.074 0.926 42 H 0.096 0.904 43 H 0.086 0.914 44 H 0.071 0.929 45 H 0.070 0.930 46 H 0.078 0.922 47 H 0.116 0.884 48 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -4.528 -0.665 -8.668 9.802 hybrid contribution 2.282 -0.071 0.525 2.342 sum -2.246 -0.736 -8.142 8.479 Atomic orbital electron populations 1.21634 0.94882 0.99852 1.03318 1.21514 0.97325 0.93895 1.02207 1.21428 0.97833 0.93988 0.89560 0.92002 1.19778 0.85376 0.83745 0.84111 1.90542 1.29279 1.41690 1.84861 1.43398 1.21067 1.46171 1.04910 1.19697 0.95174 1.23230 1.06646 0.87994 1.25201 0.99104 0.96696 0.95536 1.69477 1.37555 1.35736 1.10109 0.85817 0.81022 0.79392 0.77795 1.20358 1.20633 1.19366 1.20524 0.95783 0.89845 0.90161 1.23532 0.78673 0.85971 0.76806 1.90529 1.34089 1.70718 1.45742 1.84530 1.69439 1.33632 1.47072 1.61900 1.59102 1.01579 1.00886 1.22856 0.99020 0.99005 0.90637 1.22572 0.98303 0.82528 0.97444 1.87909 1.80765 1.23899 1.37952 1.22174 0.99122 0.90997 0.83585 0.91591 1.21518 1.00618 0.93365 0.99926 1.21683 1.00082 0.99394 0.99100 1.22790 0.97018 0.89965 1.00321 0.92504 0.91606 0.94110 0.92144 0.90421 0.91549 0.90727 0.85255 0.75754 0.94431 0.89380 0.89014 0.92566 0.90385 0.91364 0.92933 0.93008 0.92184 0.88374 0.94735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.31 37.16 0.35 -1.89 16 2 C -0.11 -1.84 4.94 -26.73 -0.13 -1.97 16 3 C 0.08 1.62 1.32 -68.86 -0.09 1.53 16 4 H 0.06 1.29 6.66 -51.93 -0.35 0.94 16 5 C 0.48 11.15 5.01 -10.99 -0.06 11.10 16 6 O -0.58 -14.55 14.64 5.54 0.08 -14.47 16 7 N -0.44 -10.55 2.13 -116.09 -0.25 -10.80 16 8 C -0.32 -7.76 8.75 -14.93 -0.13 -7.89 16 9 H 0.10 2.32 5.61 -52.49 -0.29 2.03 16 10 C 0.04 0.89 5.31 -17.47 -0.09 0.80 16 11 N -0.89 -22.34 7.90 55.50 0.44 -21.90 16 12 Si 0.93 19.24 29.55 -169.99 -5.02 14.21 16 13 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 14 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 15 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 16 C 0.16 3.85 5.28 -5.19 -0.03 3.82 16 17 C 0.51 12.38 6.10 36.01 0.22 12.60 16 18 O -0.52 -14.41 16.73 -18.75 -0.31 -14.72 16 19 O -0.54 -10.93 13.42 -39.24 -0.53 -11.46 16 20 N -0.51 -9.11 3.36 -227.73 -0.77 -9.87 16 21 C 0.01 0.19 4.96 -3.72 -0.02 0.17 16 22 C 0.07 0.90 7.01 37.21 0.26 1.16 16 23 O -0.39 -5.90 10.02 -35.23 -0.35 -6.25 16 24 C 0.10 1.57 2.80 -26.68 -0.07 1.49 16 25 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 26 C -0.12 -1.63 5.65 -26.73 -0.15 -1.78 16 27 C -0.15 -1.72 9.81 37.16 0.36 -1.35 16 28 C 0.03 0.51 4.59 -3.71 -0.02 0.49 16 29 H 0.06 1.05 7.32 -51.93 -0.38 0.67 16 30 H 0.06 1.07 6.98 -51.93 -0.36 0.71 16 31 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.85 6.46 -51.93 -0.34 0.51 16 33 H 0.08 1.34 7.44 -51.93 -0.39 0.96 16 34 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 35 H 0.07 1.69 7.40 -51.93 -0.38 1.31 16 36 H 0.13 3.08 6.39 -51.93 -0.33 2.75 16 37 H 0.39 6.20 9.10 45.56 0.41 6.62 16 38 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.09 1.13 5.85 -51.93 -0.30 0.83 16 40 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 43 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 44 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 46 H 0.06 0.72 7.83 -51.93 -0.41 0.31 16 47 H 0.10 2.16 6.27 -51.93 -0.33 1.84 16 48 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 372.97 15.07 5.62 5.62 Total: -1.00 -30.35 372.97 -7.49 -37.85 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: -6.80 Total: 13.52 kcal Atomic # 6 Polarization: 17.88 SS G_CDS: 0.40 Total: 18.28 kcal Atomic # 7 Polarization: -42.00 SS G_CDS: -0.57 Total: -42.58 kcal Atomic # 8 Polarization: -45.78 SS G_CDS: -1.11 Total: -46.89 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.02 Total: 14.21 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.35 -7.49 -37.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595484124.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.008 kcal (2) G-P(sol) polarization free energy of solvation -30.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds