Wall clock time and date at job start Tue Mar 31 2020 15:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46505 * 109.47131 * 2 1 4 4 C 1.46499 * 120.00214 * 270.00228 * 3 2 1 5 5 C 1.50693 * 109.47002 * 270.00029 * 4 3 2 6 6 H 1.08000 * 120.00718 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99738 * 179.97438 * 5 4 3 8 8 N 1.31512 * 119.99994 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99762 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47406 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46998 * 120.00322 * 9 7 5 12 12 H 1.48509 * 109.46938 * 239.99829 * 9 7 5 13 13 C 1.34778 * 119.99380 * 90.00116 * 3 2 1 14 14 O 1.21287 * 119.99531 * 180.02562 * 13 3 2 15 15 C 1.50701 * 120.00487 * 0.02562 * 13 3 2 16 16 N 1.46900 * 109.47026 * 180.02562 * 15 13 3 17 17 C 1.46895 * 110.99475 * 180.02562 * 16 15 13 18 18 H 1.08997 * 109.47605 * 35.00099 * 17 16 15 19 19 C 1.53003 * 109.47075 * 154.99755 * 17 16 15 20 20 C 1.53004 * 109.47080 * 294.99939 * 19 17 16 21 21 H 1.08998 * 109.87053 * 53.99435 * 20 19 17 22 22 C 1.54102 * 109.87731 * 175.00037 * 20 19 17 23 23 C 1.54808 * 104.18953 * 121.45104 * 22 20 19 24 24 C 1.55001 * 102.09080 * 20.88212 * 23 22 20 25 25 O 1.43741 * 109.87530 * 292.82502 * 20 19 17 26 26 C 1.50700 * 109.47051 * 274.99516 * 17 16 15 27 27 O 1.20822 * 119.99958 * 0.02562 * 26 17 16 28 28 O 1.34234 * 120.00068 * 180.02562 * 26 17 16 29 29 H 1.09005 * 109.47225 * 299.99508 * 1 2 3 30 30 H 1.09005 * 109.47623 * 59.99896 * 1 2 3 31 31 H 1.09008 * 109.47085 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47225 * 240.00492 * 2 1 3 33 33 H 1.08998 * 109.47125 * 120.00536 * 2 1 3 34 34 H 1.09007 * 109.46768 * 30.00160 * 4 3 2 35 35 H 1.08997 * 109.47053 * 149.99799 * 4 3 2 36 36 H 0.96998 * 120.00137 * 179.97438 * 8 7 5 37 37 H 1.08995 * 109.47130 * 59.99561 * 15 13 3 38 38 H 1.08994 * 109.46643 * 299.99877 * 15 13 3 39 39 H 1.00897 * 111.00293 * 56.04416 * 16 15 13 40 40 H 1.09005 * 109.47015 * 55.00003 * 19 17 16 41 41 H 1.08996 * 109.47660 * 174.99506 * 19 17 16 42 42 H 1.08996 * 110.48355 * 240.13130 * 22 20 19 43 43 H 1.08996 * 110.48955 * 2.77494 * 22 20 19 44 44 H 1.09006 * 110.90540 * 139.07345 * 23 22 20 45 45 H 1.08994 * 110.91048 * 262.68196 * 23 22 20 46 46 H 1.08991 * 110.62176 * 81.47452 * 24 23 22 47 47 H 1.08998 * 110.61545 * 204.31956 * 24 23 22 48 48 H 0.96698 * 117.00153 * 179.97438 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6856 1.8351 -1.7037 6 1 4.3428 1.2310 -1.0959 7 6 4.1489 2.3898 -2.8780 8 7 3.3488 3.1259 -3.6180 9 14 5.9133 2.0969 -3.4169 10 1 6.6010 1.2417 -2.4165 11 1 5.9212 1.4174 -4.7373 12 1 6.6202 3.3984 -3.5258 13 6 2.2429 2.0165 1.1673 14 8 2.6467 3.1601 1.1673 15 6 1.9923 1.3058 2.4724 16 7 2.3098 2.2061 3.5889 17 6 2.0775 1.5453 4.8802 18 1 2.3299 0.4882 4.7981 19 6 2.9539 2.1972 5.9516 20 6 4.4278 1.9453 5.6275 21 1 4.6459 2.2770 4.6124 22 6 5.3214 2.7020 6.6293 23 6 6.1753 1.5924 7.2896 24 6 6.0814 0.4478 6.2486 25 8 4.7255 0.5455 5.7621 26 6 0.6269 1.6872 5.2632 27 8 -0.1353 2.2776 4.5349 28 8 0.1815 1.1575 6.4134 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 1.5815 1.6878 -2.0283 35 1 2.0954 3.1411 -1.1383 36 1 3.6748 3.5164 -4.4439 37 1 2.6228 0.4186 2.5299 38 1 0.9445 1.0113 2.5302 39 1 1.7842 3.0647 3.5219 40 1 2.7646 3.2705 5.9723 41 1 2.7174 1.7678 6.9252 42 1 5.9596 3.4154 6.1080 43 1 4.7115 3.2096 7.3767 44 1 7.2075 1.9193 7.4160 45 1 5.7458 1.2868 8.2436 46 1 6.7924 0.6068 5.4380 47 1 6.2525 -0.5181 6.7238 48 1 -0.7567 1.2745 6.6163 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001596299477.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:00 Heat of formation + Delta-G solvation = -174.180947 kcal Electronic energy + Delta-G solvation = -29297.592776 eV Core-core repulsion = 25159.470511 eV Total energy + Delta-G solvation = -4138.122265 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.76426 -39.48902 -39.00263 -36.68935 -35.79601 -35.13090 -32.84413 -32.42183 -31.89361 -30.04656 -28.90036 -27.31284 -25.29772 -24.65913 -22.96908 -22.31272 -22.17214 -21.03683 -20.86461 -18.52843 -18.21369 -17.41392 -16.70137 -16.44439 -16.22163 -16.02223 -15.77008 -15.55375 -15.37643 -14.71498 -14.41536 -14.22329 -13.92427 -13.76921 -13.39935 -13.28817 -13.00481 -12.67059 -12.63232 -12.26299 -11.95607 -11.92153 -11.81768 -11.77497 -11.70264 -11.54036 -11.30917 -11.16204 -11.14665 -10.85821 -10.84517 -10.71030 -10.61635 -10.48964 -10.08356 -9.72010 -9.56343 -8.92075 -8.56795 -8.39420 -7.59690 -5.99826 -4.04062 1.95347 2.81653 3.32807 3.39890 3.43413 3.50906 3.64599 3.78877 4.27311 4.40253 4.46926 4.50378 4.72209 4.81714 4.91576 4.96312 5.09454 5.13460 5.19494 5.32468 5.34809 5.42593 5.47018 5.50453 5.55884 5.59508 5.61701 5.66043 5.71087 5.79682 5.83592 5.87226 6.06630 6.14819 6.25485 6.27202 6.51980 6.65186 6.83374 7.13850 7.26013 7.50406 7.61467 7.65732 7.97276 8.29022 8.48591 8.96132 9.16827 9.60934 11.08303 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.010652 B = 0.003545 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2627.921065 B = 7895.797912 C = 9702.522119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.107 3.893 3 N -0.598 5.598 4 C 0.247 3.753 5 C -0.523 4.523 6 H 0.058 0.942 7 C 0.060 3.940 8 N -0.896 5.896 9 Si 0.898 3.102 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.509 3.491 14 O -0.529 6.529 15 C 0.035 3.965 16 N -0.637 5.637 17 C 0.100 3.900 18 H 0.125 0.875 19 C -0.097 4.097 20 C 0.081 3.919 21 H 0.094 0.906 22 C -0.153 4.153 23 C -0.156 4.156 24 C 0.047 3.953 25 O -0.374 6.374 26 C 0.447 3.553 27 O -0.514 6.514 28 O -0.515 6.515 29 H 0.049 0.951 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.083 0.917 33 H 0.063 0.937 34 H 0.031 0.969 35 H 0.043 0.957 36 H 0.262 0.738 37 H 0.099 0.901 38 H 0.058 0.942 39 H 0.363 0.637 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.074 0.926 46 H 0.061 0.939 47 H 0.089 0.911 48 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.788 -7.342 23.413 24.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.331 5.331 4 C 0.128 3.872 5 C -0.562 4.562 6 H 0.076 0.924 7 C -0.142 4.142 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.294 3.706 14 O -0.405 6.405 15 C -0.097 4.097 16 N -0.271 5.271 17 C -0.013 4.013 18 H 0.142 0.858 19 C -0.135 4.135 20 C 0.024 3.976 21 H 0.111 0.889 22 C -0.191 4.191 23 C -0.193 4.193 24 C -0.030 4.030 25 O -0.294 6.294 26 C 0.287 3.713 27 O -0.401 6.401 28 O -0.326 6.326 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.101 0.899 33 H 0.081 0.919 34 H 0.049 0.951 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.117 0.883 38 H 0.076 0.924 39 H 0.185 0.815 40 H 0.100 0.900 41 H 0.103 0.897 42 H 0.096 0.904 43 H 0.094 0.906 44 H 0.096 0.904 45 H 0.093 0.907 46 H 0.079 0.921 47 H 0.107 0.893 48 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -0.852 -6.802 22.848 23.854 hybrid contribution -0.624 0.028 -0.249 0.672 sum -1.476 -6.774 22.598 23.638 Atomic orbital electron populations 1.22230 0.96910 1.01328 1.02335 1.21403 0.93404 0.84328 1.02622 1.48226 1.63965 1.13232 1.07653 1.19253 0.96230 0.93619 0.78063 1.21489 0.96932 1.31684 1.06100 0.92373 1.24938 0.97810 0.94980 0.96435 1.69945 1.35577 1.33615 1.14351 0.86450 0.84743 0.78021 0.78246 1.19785 1.21047 1.20915 1.20019 0.78787 0.87045 0.84716 1.90672 1.45062 1.17858 1.86910 1.22044 1.00481 0.96673 0.90522 1.60564 1.60649 1.07445 0.98429 1.21598 0.85274 1.02780 0.91697 0.85780 1.21701 0.93482 1.01277 0.97022 1.22755 0.93356 0.81395 1.00129 0.88860 1.23013 0.98633 0.98578 0.98852 1.23124 1.00727 0.96064 0.99419 1.23503 0.84807 0.99091 0.95574 1.88843 1.29422 1.23982 1.87140 1.25290 0.93483 0.74449 0.78069 1.90759 1.57990 1.39708 1.51671 1.84602 1.33787 1.73345 1.40836 0.93178 0.92000 0.92234 0.89884 0.91880 0.95090 0.93940 0.92843 0.88283 0.92378 0.81467 0.89990 0.89720 0.90361 0.90551 0.90444 0.90718 0.92090 0.89269 0.73699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.42 10.24 37.15 0.38 -2.04 16 2 C 0.11 1.76 5.93 -4.04 -0.02 1.74 16 3 N -0.60 -12.93 2.46 -175.06 -0.43 -13.36 16 4 C 0.25 6.60 5.16 -5.20 -0.03 6.57 16 5 C -0.52 -15.06 9.39 -34.44 -0.32 -15.38 16 6 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 9 Si 0.90 22.15 29.54 -169.99 -5.02 17.13 16 10 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 13 C 0.51 10.88 7.71 -10.98 -0.08 10.80 16 14 O -0.53 -13.57 15.78 5.55 0.09 -13.48 16 15 C 0.03 0.55 4.41 -4.98 -0.02 0.53 16 16 N -0.64 -9.36 5.09 -109.23 -0.56 -9.92 16 17 C 0.10 1.13 2.46 -68.87 -0.17 0.96 16 18 H 0.12 1.37 7.44 -51.93 -0.39 0.98 16 19 C -0.10 -0.94 4.34 -26.73 -0.12 -1.06 16 20 C 0.08 0.86 3.35 -26.15 -0.09 0.78 16 21 H 0.09 1.22 7.62 -51.93 -0.40 0.83 16 22 C -0.15 -1.28 6.64 -25.20 -0.17 -1.45 16 23 C -0.16 -1.14 7.15 -24.72 -0.18 -1.32 16 24 C 0.05 0.42 7.72 38.21 0.29 0.71 16 25 O -0.37 -4.29 10.76 -35.23 -0.38 -4.67 16 26 C 0.45 5.12 7.46 36.01 0.27 5.39 16 27 O -0.51 -7.60 16.06 -18.75 -0.30 -7.91 16 28 O -0.52 -4.35 13.23 -39.27 -0.52 -4.87 16 29 H 0.05 0.71 7.22 -51.93 -0.38 0.34 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 32 H 0.08 1.41 8.07 -51.93 -0.42 0.99 16 33 H 0.06 0.87 6.44 -51.93 -0.33 0.54 16 34 H 0.03 0.83 8.07 -51.92 -0.42 0.42 16 35 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 36 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.10 1.41 7.31 -51.93 -0.38 1.03 16 38 H 0.06 0.86 6.66 -51.93 -0.35 0.52 16 39 H 0.36 5.90 7.45 -39.29 -0.29 5.61 16 40 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.08 0.73 7.99 -51.93 -0.42 0.32 16 42 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.08 0.55 7.70 -51.93 -0.40 0.15 16 44 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.40 1.84 9.10 45.56 0.41 2.25 16 LS Contribution 394.73 15.07 5.95 5.95 Total: -1.00 -35.85 394.73 -7.85 -43.70 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -7.06 Total: 5.82 kcal Atomic # 6 Polarization: 8.22 SS G_CDS: -0.35 Total: 7.87 kcal Atomic # 7 Polarization: -49.29 SS G_CDS: -0.25 Total: -49.54 kcal Atomic # 8 Polarization: -29.82 SS G_CDS: -1.11 Total: -30.93 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.85 -7.85 -43.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001596299477.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.484 kcal (2) G-P(sol) polarization free energy of solvation -35.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds