Wall clock time and date at job start Tue Mar 31 2020 15:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 109.47194 * 2 1 4 4 C 1.46498 * 119.99638 * 89.99728 * 3 2 1 5 5 C 1.50702 * 109.47527 * 270.00252 * 4 3 2 6 6 H 1.08003 * 119.99377 * 359.97438 * 5 4 3 7 7 C 1.37872 * 119.99998 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00323 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99759 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47078 * 89.99763 * 9 7 5 11 11 H 1.48507 * 109.46856 * 209.99628 * 9 7 5 12 12 H 1.48502 * 109.47034 * 329.99510 * 9 7 5 13 13 C 1.34776 * 120.00505 * 270.00092 * 3 2 1 14 14 O 1.21278 * 120.00048 * 179.97438 * 13 3 2 15 15 C 1.50704 * 119.99426 * 0.02562 * 13 3 2 16 16 N 1.46904 * 109.46566 * 180.02562 * 15 13 3 17 17 C 1.46900 * 110.99916 * 179.97438 * 16 15 13 18 18 H 1.09001 * 109.46847 * 354.07931 * 17 16 15 19 19 C 1.53002 * 109.47222 * 234.07719 * 17 16 15 20 20 C 1.52999 * 109.46999 * 69.62060 * 19 17 16 21 21 H 1.09002 * 109.86836 * 52.65769 * 20 19 17 22 22 C 1.54096 * 109.87833 * 173.66478 * 20 19 17 23 23 C 1.54813 * 104.18913 * 121.45494 * 22 20 19 24 24 C 1.55001 * 102.08864 * 20.88144 * 23 22 20 25 25 O 1.43742 * 109.88282 * 291.65240 * 20 19 17 26 26 C 1.50701 * 109.47562 * 114.07635 * 17 16 15 27 27 O 1.20828 * 119.99595 * 359.97438 * 26 17 16 28 28 O 1.34227 * 120.00303 * 180.02562 * 26 17 16 29 29 H 1.09008 * 109.47044 * 59.99834 * 1 2 3 30 30 H 1.09002 * 109.46752 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47086 * 299.99654 * 1 2 3 32 32 H 1.09009 * 109.47361 * 240.00639 * 2 1 3 33 33 H 1.08998 * 109.47167 * 120.00170 * 2 1 3 34 34 H 1.09006 * 109.47387 * 150.00318 * 4 3 2 35 35 H 1.08998 * 109.47410 * 30.00369 * 4 3 2 36 36 H 0.97003 * 120.00075 * 180.02562 * 8 7 5 37 37 H 1.08996 * 109.47095 * 299.99129 * 15 13 3 38 38 H 1.09000 * 109.47287 * 59.99998 * 15 13 3 39 39 H 1.00895 * 111.00484 * 56.04218 * 16 15 13 40 40 H 1.09000 * 109.47198 * 189.61726 * 19 17 16 41 41 H 1.08992 * 109.46920 * 309.61918 * 19 17 16 42 42 H 1.09000 * 110.48840 * 240.13035 * 22 20 19 43 43 H 1.09001 * 110.49098 * 2.77440 * 22 20 19 44 44 H 1.09003 * 110.90948 * 139.07560 * 23 22 20 45 45 H 1.08994 * 110.90463 * 262.68570 * 23 22 20 46 46 H 1.09000 * 110.61927 * 81.47902 * 24 23 22 47 47 H 1.09000 * 110.61263 * 204.47858 * 24 23 22 48 48 H 0.96694 * 116.99856 * 180.02562 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2624 2.0718 1.2688 5 6 1.0066 2.7822 1.7039 6 1 0.1158 2.7253 1.0958 7 6 0.9952 3.5055 2.8776 8 7 2.0800 3.5751 3.6177 9 14 -0.5618 4.3855 3.4172 10 1 -1.3776 3.4755 4.2607 11 1 -0.2008 5.5950 4.1996 12 1 -1.3444 4.7855 2.2202 13 6 2.2430 2.0167 -1.1671 14 8 2.6468 3.1602 -1.1670 15 6 1.9912 1.3064 -2.4723 16 7 2.3102 2.2063 -3.5888 17 6 2.0768 1.5461 -4.8801 18 1 1.8190 0.5004 -4.7122 19 6 3.3454 1.6283 -5.7316 20 6 4.4265 0.7326 -5.1237 21 1 4.0336 -0.2732 -4.9745 22 6 5.6519 0.6834 -6.0567 23 6 6.8169 1.2054 -5.1809 24 6 6.2728 0.9776 -3.7475 25 8 4.8637 1.2777 -3.8675 26 6 0.9443 2.2336 -5.5985 27 8 0.3883 3.1764 -5.0869 28 8 0.5527 1.7978 -6.8061 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8934 -0.5138 -0.8901 33 1 1.8933 -0.5138 0.8900 34 1 3.0644 2.7985 1.1385 35 1 2.5505 1.3451 2.0284 36 1 2.0718 4.0837 4.4437 37 1 2.6212 0.4188 -2.5303 38 1 0.9432 1.0127 -2.5298 39 1 3.2587 2.5437 -3.5217 40 1 3.1247 1.2945 -6.7455 41 1 3.6995 2.6588 -5.7574 42 1 5.8455 -0.3398 -6.3787 43 1 5.5016 1.3335 -6.9186 44 1 7.7224 0.6227 -5.3504 45 1 6.9973 2.2645 -5.3647 46 1 6.4178 -0.0586 -3.4420 47 1 6.7517 1.6573 -3.0427 48 1 -0.1776 2.2709 -7.2278 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001596299480.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:09 Heat of formation + Delta-G solvation = -166.752769 kcal Electronic energy + Delta-G solvation = -29736.859845 eV Core-core repulsion = 25599.059690 eV Total energy + Delta-G solvation = -4137.800155 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.48784 -39.61131 -38.89806 -36.41552 -35.74764 -35.05590 -32.80430 -32.56793 -31.76063 -29.88347 -28.95292 -27.31361 -25.28702 -24.66689 -22.65775 -22.49238 -22.13701 -21.24380 -20.88543 -18.38843 -17.97244 -16.95757 -16.74076 -16.41695 -16.35951 -15.88258 -15.72862 -15.55460 -15.19319 -14.92457 -14.35426 -14.07414 -13.91869 -13.69052 -13.40247 -13.13300 -12.90108 -12.87810 -12.41578 -12.26307 -12.06322 -11.96163 -11.94100 -11.62326 -11.53944 -11.36968 -11.32794 -11.19296 -11.08170 -11.02501 -10.80663 -10.64274 -10.41263 -10.34169 -9.95374 -9.94593 -9.46612 -8.76503 -8.33427 -8.22711 -7.52439 -5.94460 -3.97547 2.30697 2.88575 3.37017 3.43838 3.48826 3.51230 3.61770 3.92562 4.21527 4.27063 4.43732 4.55061 4.59083 4.64937 4.75143 4.96244 4.97618 5.14820 5.21543 5.28317 5.36225 5.37528 5.40369 5.45771 5.46020 5.53653 5.62290 5.63603 5.66671 5.73722 5.79529 5.88096 5.94486 6.18305 6.40063 6.52423 6.61490 6.82202 6.90323 7.20959 7.55449 7.64477 7.70144 8.02083 8.03356 8.35613 8.57070 9.03116 9.27952 9.67173 11.13696 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.012895 B = 0.003490 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2170.930013 B = 8021.031208 C = 9104.608553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.113 3.887 3 N -0.602 5.602 4 C 0.248 3.752 5 C -0.519 4.519 6 H 0.059 0.941 7 C 0.060 3.940 8 N -0.897 5.897 9 Si 0.895 3.105 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.274 1.274 13 C 0.510 3.490 14 O -0.524 6.524 15 C 0.049 3.951 16 N -0.648 5.648 17 C 0.105 3.895 18 H 0.096 0.904 19 C -0.131 4.131 20 C 0.072 3.928 21 H 0.072 0.928 22 C -0.149 4.149 23 C -0.155 4.155 24 C 0.048 3.952 25 O -0.370 6.370 26 C 0.468 3.532 27 O -0.479 6.479 28 O -0.528 6.528 29 H 0.048 0.952 30 H 0.051 0.949 31 H 0.076 0.924 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.042 0.958 35 H 0.030 0.970 36 H 0.261 0.739 37 H 0.056 0.944 38 H 0.089 0.911 39 H 0.374 0.626 40 H 0.096 0.904 41 H 0.087 0.913 42 H 0.076 0.924 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.078 0.922 46 H 0.061 0.939 47 H 0.096 0.904 48 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.239 -12.838 -22.378 26.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.012 4.012 3 N -0.335 5.335 4 C 0.129 3.871 5 C -0.558 4.558 6 H 0.077 0.923 7 C -0.142 4.142 8 N -0.537 5.537 9 Si 0.723 3.277 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.198 1.198 13 C 0.296 3.704 14 O -0.400 6.400 15 C -0.083 4.083 16 N -0.287 5.287 17 C -0.008 4.008 18 H 0.114 0.886 19 C -0.169 4.169 20 C 0.014 3.986 21 H 0.090 0.910 22 C -0.187 4.187 23 C -0.193 4.193 24 C -0.028 4.028 25 O -0.289 6.289 26 C 0.307 3.693 27 O -0.362 6.362 28 O -0.341 6.341 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.095 0.905 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.060 0.940 35 H 0.048 0.952 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.107 0.893 39 H 0.201 0.799 40 H 0.115 0.885 41 H 0.105 0.895 42 H 0.095 0.905 43 H 0.098 0.902 44 H 0.098 0.902 45 H 0.097 0.903 46 H 0.079 0.921 47 H 0.114 0.886 48 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 5.990 -11.625 -21.660 25.302 hybrid contribution -0.676 0.020 -0.019 0.676 sum 5.314 -11.605 -21.679 25.158 Atomic orbital electron populations 1.22245 0.96491 1.00711 1.03465 1.21353 0.94462 0.83966 1.01381 1.48232 1.64490 1.13106 1.07676 1.19243 0.97450 0.92378 0.78040 1.21481 0.97598 1.30736 1.05953 0.92317 1.24922 0.96378 0.96311 0.96550 1.69933 1.27423 1.41970 1.14363 0.86545 0.83360 0.79252 0.78583 1.20772 1.21174 1.19840 1.20022 0.78881 0.86878 0.84650 1.90674 1.45305 1.17162 1.86830 1.21928 1.01652 0.94196 0.90532 1.59610 1.34405 1.36857 0.97779 1.20916 0.91501 0.97251 0.91098 0.88620 1.22265 0.92890 1.02291 0.99433 1.22818 0.94505 0.96687 0.84573 0.91043 1.22970 0.94277 1.02364 0.99073 1.23137 0.98347 1.02512 0.95305 1.23600 0.81316 1.00938 0.96973 1.88926 1.24302 1.78655 1.37001 1.23762 0.84206 0.82549 0.78823 1.90765 1.53451 1.26395 1.65607 1.84506 1.54034 1.61610 1.33902 0.93279 0.92967 0.90538 0.92321 0.90823 0.93984 0.95234 0.92889 0.92600 0.89315 0.79904 0.88523 0.89459 0.90504 0.90161 0.90246 0.90307 0.92082 0.88563 0.73597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.74 10.24 37.16 0.38 -2.36 16 2 C 0.11 1.87 5.98 -4.04 -0.02 1.84 16 3 N -0.60 -13.17 2.46 -175.05 -0.43 -13.60 16 4 C 0.25 6.67 5.20 -5.19 -0.03 6.64 16 5 C -0.52 -15.13 8.92 -34.44 -0.31 -15.43 16 6 H 0.06 1.73 7.42 -52.48 -0.39 1.34 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.90 -27.33 13.29 55.43 0.74 -26.59 16 9 Si 0.89 22.71 29.54 -169.99 -5.02 17.68 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 12 H -0.27 -7.01 7.11 56.52 0.40 -6.61 16 13 C 0.51 11.28 7.71 -10.98 -0.08 11.19 16 14 O -0.52 -14.11 15.78 5.56 0.09 -14.02 16 15 C 0.05 0.80 4.31 -4.97 -0.02 0.78 16 16 N -0.65 -10.50 5.24 -109.21 -0.57 -11.07 16 17 C 0.11 1.23 2.69 -68.86 -0.19 1.04 16 18 H 0.10 0.93 7.49 -51.93 -0.39 0.54 16 19 C -0.13 -1.15 4.15 -26.73 -0.11 -1.26 16 20 C 0.07 0.60 3.39 -26.16 -0.09 0.51 16 21 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 22 C -0.15 -0.92 6.64 -25.20 -0.17 -1.09 16 23 C -0.16 -1.04 7.16 -24.72 -0.18 -1.22 16 24 C 0.05 0.43 7.72 38.21 0.29 0.72 16 25 O -0.37 -4.23 8.68 -35.23 -0.31 -4.53 16 26 C 0.47 6.08 7.70 36.01 0.28 6.36 16 27 O -0.48 -8.59 17.19 -18.75 -0.32 -8.91 16 28 O -0.53 -4.72 13.15 -39.25 -0.52 -5.23 16 29 H 0.05 0.79 7.22 -51.92 -0.37 0.42 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.08 1.46 7.26 -51.93 -0.38 1.08 16 32 H 0.06 0.77 6.44 -51.92 -0.33 0.44 16 33 H 0.07 1.18 7.89 -51.93 -0.41 0.77 16 34 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 35 H 0.03 0.80 7.89 -51.93 -0.41 0.39 16 36 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 37 H 0.06 0.76 7.40 -51.93 -0.38 0.38 16 38 H 0.09 1.39 7.18 -51.93 -0.37 1.02 16 39 H 0.37 6.36 5.60 -39.29 -0.22 6.14 16 40 H 0.10 0.64 7.88 -51.93 -0.41 0.24 16 41 H 0.09 0.87 8.11 -51.93 -0.42 0.45 16 42 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.08 0.45 7.70 -51.93 -0.40 0.05 16 44 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 46 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 48 H 0.41 2.14 9.10 45.56 0.41 2.55 16 LS Contribution 391.18 15.07 5.89 5.89 Total: -1.00 -38.31 391.18 -7.74 -46.05 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -6.95 Total: 4.95 kcal Atomic # 6 Polarization: 9.73 SS G_CDS: -0.34 Total: 9.39 kcal Atomic # 7 Polarization: -51.00 SS G_CDS: -0.27 Total: -51.27 kcal Atomic # 8 Polarization: -31.64 SS G_CDS: -1.06 Total: -32.70 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -38.31 -7.74 -46.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001596299480.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.705 kcal (2) G-P(sol) polarization free energy of solvation -38.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds