Wall clock time and date at job start Tue Mar 31 2020 15:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42902 * 109.47200 * 2 1 4 4 C 1.42904 * 113.99828 * 179.97438 * 3 2 1 5 5 H 1.09005 * 112.85026 * 338.31520 * 4 3 2 6 6 C 1.53775 * 113.60983 * 109.50568 * 4 3 2 7 7 C 1.53782 * 87.08124 * 89.20284 * 6 4 3 8 8 N 1.46897 * 113.61001 * 270.87914 * 7 6 4 9 9 C 1.46896 * 111.00444 * 290.59426 * 8 7 6 10 10 C 1.50700 * 109.47286 * 174.17316 * 9 8 7 11 11 O 1.21280 * 119.99936 * 359.97438 * 10 9 8 12 12 N 1.34778 * 119.99785 * 179.97438 * 10 9 8 13 13 C 1.46504 * 119.99909 * 179.97438 * 12 10 9 14 14 C 1.50696 * 109.47404 * 179.97438 * 13 12 10 15 15 H 1.08004 * 119.99891 * 0.02562 * 14 13 12 16 16 C 1.37881 * 120.00289 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99708 * 0.02562 * 16 14 13 18 18 Si 1.86790 * 120.00165 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47195 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47288 * 120.00339 * 18 16 14 21 21 H 1.48500 * 109.47577 * 240.00757 * 18 16 14 22 22 C 1.50698 * 113.61425 * 140.06280 * 7 6 4 23 23 O 1.20827 * 120.00414 * 347.53802 * 22 7 6 24 24 O 1.34232 * 119.99770 * 167.53162 * 22 7 6 25 25 C 1.53780 * 87.17105 * 25.47234 * 7 6 4 26 26 C 1.52999 * 113.61244 * 89.07822 * 25 7 6 27 27 C 1.53003 * 113.61312 * 219.97853 * 25 7 6 28 28 H 1.09004 * 109.46452 * 59.99763 * 1 2 3 29 29 H 1.08993 * 109.47198 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46891 * 300.00248 * 1 2 3 31 31 H 1.09002 * 109.46891 * 239.99752 * 2 1 3 32 32 H 1.09006 * 109.46939 * 120.00078 * 2 1 3 33 33 H 1.08996 * 113.61779 * 334.65039 * 6 4 3 34 34 H 1.09002 * 113.61276 * 203.74786 * 6 4 3 35 35 H 1.00906 * 110.99775 * 166.63981 * 8 7 6 36 36 H 1.09005 * 109.46933 * 294.16914 * 9 8 7 37 37 H 1.08999 * 109.47099 * 54.16809 * 9 8 7 38 38 H 0.96996 * 120.00253 * 359.97438 * 12 10 9 39 39 H 1.09003 * 109.47088 * 300.00456 * 13 12 10 40 40 H 1.08997 * 109.47058 * 59.99435 * 13 12 10 41 41 H 0.96999 * 120.00370 * 179.97438 * 17 16 14 42 42 H 0.96698 * 116.99947 * 179.97438 * 24 22 7 43 43 H 1.09001 * 109.47459 * 59.37901 * 26 25 7 44 44 H 1.09003 * 109.46572 * 179.37459 * 26 25 7 45 45 H 1.09000 * 109.47178 * 299.37288 * 26 25 7 46 46 H 1.09001 * 109.46860 * 60.00214 * 27 25 7 47 47 H 1.08997 * 109.47313 * 180.02562 * 27 25 7 48 48 H 1.08998 * 109.47220 * 300.00308 * 27 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4310 1.4601 0.0006 5 1 3.9265 0.5630 0.3721 6 6 4.0084 1.9775 -1.3274 7 6 3.8448 3.3955 -0.7554 8 7 2.5327 3.9945 -1.0339 9 6 2.3876 4.3035 -2.4626 10 6 0.9841 4.7811 -2.7332 11 8 0.1835 4.8562 -1.8254 12 7 0.6187 5.1248 -3.9842 13 6 -0.7459 5.5885 -4.2474 14 6 -0.8944 5.9068 -5.7129 15 1 -0.0563 5.7763 -6.3815 16 6 -2.1005 6.3636 -6.2004 17 7 -3.1212 6.5221 -5.3863 18 14 -2.2848 6.7575 -8.0170 19 1 -0.9993 6.4960 -8.7131 20 1 -3.3477 5.9023 -8.6036 21 1 -2.6539 8.1867 -8.1788 22 6 4.9907 4.3162 -1.0872 23 8 6.0145 3.8661 -1.5445 24 8 4.8741 5.6365 -0.8747 25 6 3.9486 2.7616 0.6418 26 6 5.3833 2.6594 1.1634 27 6 2.9852 3.3690 1.6636 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.3704 1.7776 -2.1883 34 1 5.0468 1.6907 -1.4932 35 1 2.3836 4.8173 -0.4690 36 1 3.0966 5.0838 -2.7394 37 1 2.5860 3.4072 -3.0502 38 1 1.2591 5.0651 -4.7102 39 1 -1.4546 4.8078 -3.9711 40 1 -0.9449 6.4844 -3.6594 41 1 -3.9696 6.8438 -5.7291 42 1 5.6358 6.1868 -1.1026 43 1 5.8229 3.6555 1.2150 44 1 5.3773 2.2130 2.1578 45 1 5.9716 2.0370 0.4892 46 1 1.9594 3.2342 1.3206 47 1 3.1153 2.8729 2.6253 48 1 3.1949 4.4331 1.7727 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001596833732.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:48:24 Heat of formation + Delta-G solvation = -149.494105 kcal Electronic energy + Delta-G solvation = -29813.700324 eV Core-core repulsion = 25676.648560 eV Total energy + Delta-G solvation = -4137.051764 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.65565 -39.37810 -38.66462 -36.81462 -36.27746 -34.35251 -33.85857 -32.27684 -31.22847 -30.35365 -28.36950 -27.37433 -26.59550 -24.75923 -23.14135 -22.59927 -22.37707 -21.56658 -19.62754 -18.69232 -18.19726 -17.61862 -17.20288 -16.35555 -15.97801 -15.69856 -15.59188 -15.46555 -15.15725 -14.90740 -14.45319 -14.14822 -13.87731 -13.73100 -13.28514 -13.12987 -12.93551 -12.73042 -12.58585 -12.38026 -12.24468 -12.20980 -11.99932 -11.90451 -11.74248 -11.49610 -11.43450 -11.35988 -11.17740 -10.94708 -10.91005 -10.87239 -10.45577 -10.37180 -10.29938 -9.42661 -9.35504 -9.01831 -8.71406 -8.45202 -7.82148 -6.14834 -4.21400 1.93838 2.81336 3.24382 3.31350 3.34328 3.40390 3.44549 3.57133 4.11139 4.16058 4.34778 4.38684 4.58390 4.80076 4.89914 5.02973 5.06190 5.09715 5.20748 5.21281 5.34369 5.35144 5.38187 5.42562 5.46233 5.51650 5.59429 5.67047 5.69988 5.79495 5.84320 5.84465 5.95700 6.07936 6.23699 6.27629 6.50090 6.75019 7.26321 7.30949 7.36048 7.49238 7.55917 7.68562 7.70426 7.99762 8.67514 8.81987 9.16671 9.45397 10.95399 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.013990 B = 0.003119 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.975416 B = 8975.005019 C =10160.414003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.331 6.331 4 C 0.089 3.911 5 H 0.076 0.924 6 C -0.138 4.138 7 C 0.110 3.890 8 N -0.611 5.611 9 C 0.036 3.964 10 C 0.502 3.498 11 O -0.536 6.536 12 N -0.716 5.716 13 C 0.252 3.748 14 C -0.542 4.542 15 H 0.063 0.937 16 C 0.063 3.937 17 N -0.885 5.885 18 Si 0.903 3.097 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.282 1.282 22 C 0.460 3.540 23 O -0.516 6.516 24 O -0.515 6.515 25 C -0.059 4.059 26 C -0.135 4.135 27 C -0.135 4.135 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.044 0.956 32 H 0.043 0.957 33 H 0.090 0.910 34 H 0.106 0.894 35 H 0.362 0.638 36 H 0.052 0.948 37 H 0.096 0.904 38 H 0.388 0.612 39 H 0.027 0.973 40 H 0.026 0.974 41 H 0.265 0.735 42 H 0.406 0.594 43 H 0.059 0.941 44 H 0.070 0.930 45 H 0.066 0.934 46 H 0.091 0.909 47 H 0.054 0.946 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.730 -10.787 13.039 24.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.249 6.249 4 C 0.030 3.970 5 H 0.094 0.906 6 C -0.176 4.176 7 C 0.015 3.985 8 N -0.244 5.244 9 C -0.096 4.096 10 C 0.286 3.714 11 O -0.413 6.413 12 N -0.365 5.365 13 C 0.131 3.869 14 C -0.580 4.580 15 H 0.081 0.919 16 C -0.140 4.140 17 N -0.522 5.522 18 Si 0.730 3.270 19 H -0.197 1.197 20 H -0.208 1.208 21 H -0.208 1.208 22 C 0.299 3.701 23 O -0.403 6.403 24 O -0.326 6.326 25 C -0.059 4.059 26 C -0.192 4.192 27 C -0.192 4.192 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.109 0.891 34 H 0.124 0.876 35 H 0.184 0.816 36 H 0.070 0.930 37 H 0.114 0.886 38 H 0.221 0.779 39 H 0.045 0.955 40 H 0.044 0.956 41 H 0.075 0.925 42 H 0.264 0.736 43 H 0.078 0.922 44 H 0.089 0.911 45 H 0.085 0.915 46 H 0.110 0.890 47 H 0.073 0.927 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 16.385 -11.459 13.618 24.191 hybrid contribution 1.488 1.300 -1.802 2.674 sum 17.873 -10.159 11.816 23.712 Atomic orbital electron populations 1.21708 0.93475 1.01753 1.03840 1.22522 0.95930 0.84262 0.99346 1.88158 1.17718 1.24969 1.94024 1.22777 0.83217 0.96285 0.94734 0.90567 1.23636 1.02757 0.91505 0.99734 1.22376 0.84581 0.91880 0.99662 1.59939 1.23521 1.35835 1.05066 1.21896 0.96226 1.01022 0.90480 1.20120 0.88785 0.78763 0.83759 1.90674 1.53000 1.53566 1.44066 1.46430 1.16434 1.65684 1.07986 1.19076 0.76687 0.95095 0.96029 1.21273 0.97729 1.46024 0.93018 0.91920 1.24951 0.95519 0.95158 0.98416 1.69986 1.02268 1.45053 1.34941 0.86373 0.78206 0.78061 0.84331 1.19670 1.20804 1.20823 1.25024 0.89880 0.81630 0.73522 1.90670 1.31243 1.76917 1.41422 1.84616 1.48211 1.20283 1.79530 1.22152 0.96530 0.95009 0.92244 1.21713 0.93291 1.02481 1.01730 1.21587 1.01120 0.99693 0.96769 0.91301 0.91584 0.91808 0.93752 0.93917 0.89111 0.87586 0.81581 0.92986 0.88553 0.77936 0.95519 0.95620 0.92529 0.73560 0.92241 0.91099 0.91533 0.89000 0.92667 0.92771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 10.28 37.16 0.38 -1.19 16 2 C 0.06 0.56 6.51 37.16 0.24 0.80 16 3 O -0.33 -4.05 8.33 -35.23 -0.29 -4.35 16 4 C 0.09 0.89 3.77 -25.78 -0.10 0.80 16 5 H 0.08 0.61 7.85 -51.93 -0.41 0.21 16 6 C -0.14 -1.48 6.47 -25.92 -0.17 -1.65 16 7 C 0.11 1.26 0.80 -131.94 -0.11 1.16 16 8 N -0.61 -8.51 4.35 -101.57 -0.44 -8.95 16 9 C 0.04 0.54 5.75 -4.98 -0.03 0.51 16 10 C 0.50 10.08 7.88 -10.98 -0.09 9.99 16 11 O -0.54 -12.89 16.33 5.56 0.09 -12.80 16 12 N -0.72 -15.20 5.55 -61.47 -0.34 -15.54 16 13 C 0.25 6.72 5.43 -5.19 -0.03 6.70 16 14 C -0.54 -14.80 9.28 -34.44 -0.32 -15.12 16 15 H 0.06 1.61 7.60 -52.48 -0.40 1.21 16 16 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 17 N -0.88 -26.19 13.29 55.43 0.74 -25.45 16 18 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 19 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 C 0.46 5.36 5.07 36.00 0.18 5.54 16 23 O -0.52 -6.87 16.39 -18.75 -0.31 -7.17 16 24 O -0.51 -5.17 12.92 -39.26 -0.51 -5.68 16 25 C -0.06 -0.58 1.27 -153.56 -0.20 -0.78 16 26 C -0.13 -1.11 8.08 37.16 0.30 -0.81 16 27 C -0.13 -1.39 8.11 37.16 0.30 -1.09 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.09 1.04 6.89 -51.93 -0.36 0.69 16 34 H 0.11 1.05 6.87 -51.93 -0.36 0.70 16 35 H 0.36 5.31 8.01 -39.29 -0.31 5.00 16 36 H 0.05 0.71 7.35 -51.93 -0.38 0.33 16 37 H 0.10 1.31 6.71 -51.93 -0.35 0.96 16 38 H 0.39 7.12 8.32 -40.82 -0.34 6.78 16 39 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 42 H 0.41 2.42 9.10 45.56 0.41 2.83 16 43 H 0.06 0.52 7.39 -51.93 -0.38 0.13 16 44 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.07 0.55 7.35 -51.93 -0.38 0.17 16 46 H 0.09 1.18 6.60 -51.93 -0.34 0.84 16 47 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 391.94 15.07 5.91 5.91 Total: -1.00 -34.11 391.94 -6.86 -40.97 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -6.96 Total: 10.61 kcal Atomic # 6 Polarization: 6.23 SS G_CDS: 0.28 Total: 6.51 kcal Atomic # 7 Polarization: -49.89 SS G_CDS: -0.05 Total: -49.94 kcal Atomic # 8 Polarization: -28.98 SS G_CDS: -1.02 Total: -30.00 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.11 -6.86 -40.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001596833732.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.523 kcal (2) G-P(sol) polarization free energy of solvation -34.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds