Wall clock time and date at job start Tue Mar 31 2020 15:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42900 * 109.46989 * 2 1 4 4 C 1.42905 * 113.99578 * 180.02562 * 3 2 1 5 5 H 1.08997 * 112.84815 * 341.18957 * 4 3 2 6 6 C 1.53780 * 113.61225 * 112.50483 * 4 3 2 7 7 C 1.53779 * 87.07997 * 139.97857 * 6 4 3 8 8 N 1.46902 * 113.61668 * 89.11662 * 7 6 4 9 9 C 1.46896 * 111.00197 * 77.51476 * 8 7 6 10 10 C 1.50697 * 109.47205 * 185.60529 * 9 8 7 11 11 O 1.21286 * 119.99842 * 0.02562 * 10 9 8 12 12 N 1.34782 * 120.00182 * 180.02562 * 10 9 8 13 13 C 1.46497 * 119.99685 * 179.97438 * 12 10 9 14 14 C 1.50706 * 109.46863 * 179.97438 * 13 12 10 15 15 H 1.08001 * 119.99963 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00071 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00062 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00090 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46778 * 60.00449 * 18 16 14 20 20 H 1.48493 * 109.47279 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47380 * 300.00713 * 18 16 14 22 22 C 1.50698 * 113.68587 * 220.00347 * 7 6 4 23 23 O 1.20825 * 120.00294 * 12.11238 * 22 7 6 24 24 O 1.34235 * 119.99882 * 192.11471 * 22 7 6 25 25 C 1.53775 * 87.08159 * 334.56181 * 7 6 4 26 26 C 1.53000 * 113.61019 * 139.98038 * 25 7 6 27 27 C 1.52997 * 113.61577 * 270.80115 * 25 7 6 28 28 H 1.08995 * 109.47642 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47065 * 299.99987 * 1 2 3 30 30 H 1.08995 * 109.47299 * 60.00083 * 1 2 3 31 31 H 1.08993 * 109.46885 * 239.99988 * 2 1 3 32 32 H 1.09006 * 109.46627 * 119.99676 * 2 1 3 33 33 H 1.09000 * 113.61800 * 25.42580 * 6 4 3 34 34 H 1.09003 * 113.61159 * 254.52279 * 6 4 3 35 35 H 1.00896 * 111.00012 * 201.47615 * 8 7 6 36 36 H 1.08997 * 109.47497 * 305.60632 * 9 8 7 37 37 H 1.09005 * 109.46911 * 65.60703 * 9 8 7 38 38 H 0.96991 * 120.00059 * 0.02562 * 12 10 9 39 39 H 1.09000 * 109.47673 * 299.99719 * 13 12 10 40 40 H 1.09004 * 109.47753 * 60.00307 * 13 12 10 41 41 H 0.97003 * 119.99920 * 180.02562 * 17 16 14 42 42 H 0.96696 * 117.00565 * 180.02562 * 24 22 7 43 43 H 1.08999 * 109.47023 * 60.00830 * 26 25 7 44 44 H 1.09007 * 109.46648 * 180.02562 * 26 25 7 45 45 H 1.08993 * 109.47576 * 300.00124 * 26 25 7 46 46 H 1.08999 * 109.46980 * 53.47055 * 27 25 7 47 47 H 1.09005 * 109.46703 * 173.46977 * 27 25 7 48 48 H 1.08995 * 109.47137 * 293.46496 * 27 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.9280 0.5456 0.3229 6 6 4.0018 2.0465 -1.3025 7 6 4.9896 2.8314 -0.4232 8 7 6.2353 2.1044 -0.1445 9 6 7.1389 2.1450 -1.3020 10 6 8.3412 1.2777 -1.0315 11 8 8.4358 0.6838 0.0218 12 7 9.3113 1.1620 -1.9599 13 6 10.4803 0.3192 -1.6966 14 6 11.4073 0.3608 -2.8841 15 1 11.1509 0.9551 -3.7487 16 6 12.5825 -0.3600 -2.8669 17 7 12.8944 -1.0841 -1.8143 18 14 13.7311 -0.3090 -4.3392 19 1 14.1714 1.0894 -4.5753 20 1 14.9161 -1.1631 -4.0723 21 1 13.0186 -0.8132 -5.5406 22 6 5.2286 4.2431 -0.8931 23 8 4.5114 4.7291 -1.7353 24 8 6.2383 4.9607 -0.3760 25 6 3.9489 2.7251 0.7038 26 6 4.5610 2.4534 2.0795 27 6 2.9417 3.8767 0.7186 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.2978 2.6806 -1.8414 34 1 4.4806 1.3051 -1.9422 35 1 6.6885 2.4668 0.6809 36 1 6.6159 1.7761 -2.1843 37 1 7.4627 3.1715 -1.4743 38 1 9.2359 1.6372 -2.8020 39 1 11.0031 0.6883 -0.8142 40 1 10.1569 -0.7074 -1.5244 41 1 13.7215 -1.5909 -1.8021 42 1 6.3519 5.8616 -0.7084 43 1 5.2417 3.2636 2.3407 44 1 3.7674 2.3907 2.8242 45 1 5.1096 1.5120 2.0536 46 1 2.4805 3.9686 -0.2647 47 1 2.1718 3.6764 1.4638 48 1 3.4552 4.8054 0.9674 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001596833733.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:48:29 Heat of formation + Delta-G solvation = -156.240596 kcal Electronic energy + Delta-G solvation = -29282.123138 eV Core-core repulsion = 25144.778824 eV Total energy + Delta-G solvation = -4137.344313 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.71015 -39.39977 -38.79350 -37.11904 -36.33756 -34.40932 -33.93094 -32.33642 -31.39234 -30.52093 -28.30124 -27.64325 -26.56621 -24.86828 -23.24660 -22.78360 -22.41401 -21.57555 -19.74125 -18.77028 -18.23641 -17.73654 -17.15176 -16.37191 -16.21066 -15.84160 -15.61179 -15.55599 -15.27484 -14.99613 -14.53048 -14.30304 -13.89045 -13.75212 -13.43640 -13.25709 -13.02498 -12.79778 -12.67653 -12.54260 -12.34695 -12.29201 -12.10652 -11.94619 -11.77567 -11.57915 -11.55105 -11.48872 -11.19752 -11.02689 -11.00492 -10.88070 -10.73632 -10.51942 -10.33649 -9.53159 -9.43352 -9.15689 -8.75413 -8.68326 -7.90489 -6.18359 -4.25470 1.90572 2.69932 3.23910 3.28673 3.29955 3.32565 3.44439 3.53587 4.03114 4.05311 4.26277 4.36387 4.47133 4.72967 4.83814 4.91433 4.96426 5.02329 5.16567 5.17627 5.20080 5.29471 5.35828 5.38957 5.43492 5.49101 5.50348 5.64598 5.66158 5.68372 5.69134 5.79407 5.86830 5.92067 6.07570 6.18449 6.25326 6.57902 7.07255 7.10936 7.28713 7.40539 7.49758 7.64170 7.65340 7.95119 8.59379 8.75778 9.06784 9.41150 10.91744 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.016400 B = 0.002602 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.954174 B =10757.246344 C =11483.367157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.371 6.371 4 C 0.087 3.913 5 H 0.105 0.895 6 C -0.128 4.128 7 C 0.100 3.900 8 N -0.626 5.626 9 C 0.032 3.968 10 C 0.502 3.498 11 O -0.540 6.540 12 N -0.713 5.713 13 C 0.252 3.748 14 C -0.545 4.545 15 H 0.062 0.938 16 C 0.064 3.936 17 N -0.885 5.885 18 Si 0.904 3.096 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.275 1.275 22 C 0.466 3.534 23 O -0.510 6.510 24 O -0.515 6.515 25 C -0.055 4.055 26 C -0.142 4.142 27 C -0.126 4.126 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.049 0.951 32 H 0.050 0.950 33 H 0.108 0.892 34 H 0.086 0.914 35 H 0.365 0.635 36 H 0.098 0.902 37 H 0.061 0.939 38 H 0.390 0.610 39 H 0.027 0.973 40 H 0.027 0.973 41 H 0.267 0.733 42 H 0.407 0.593 43 H 0.060 0.940 44 H 0.062 0.938 45 H 0.077 0.923 46 H 0.068 0.932 47 H 0.071 0.929 48 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.436 8.805 4.324 24.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.290 6.290 4 C 0.029 3.971 5 H 0.123 0.877 6 C -0.166 4.166 7 C 0.005 3.995 8 N -0.260 5.260 9 C -0.101 4.101 10 C 0.285 3.715 11 O -0.418 6.418 12 N -0.363 5.363 13 C 0.131 3.869 14 C -0.583 4.583 15 H 0.080 0.920 16 C -0.140 4.140 17 N -0.523 5.523 18 Si 0.731 3.269 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.201 1.201 22 C 0.306 3.694 23 O -0.396 6.396 24 O -0.327 6.327 25 C -0.056 4.056 26 C -0.199 4.199 27 C -0.183 4.183 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.126 0.874 34 H 0.105 0.895 35 H 0.187 0.813 36 H 0.116 0.884 37 H 0.079 0.921 38 H 0.222 0.778 39 H 0.045 0.955 40 H 0.045 0.955 41 H 0.076 0.924 42 H 0.266 0.734 43 H 0.079 0.921 44 H 0.081 0.919 45 H 0.096 0.904 46 H 0.088 0.912 47 H 0.090 0.910 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -22.805 7.498 4.925 24.506 hybrid contribution 1.399 1.603 -1.527 2.619 sum -21.406 9.101 3.397 23.507 Atomic orbital electron populations 1.21740 0.93942 1.02150 1.02963 1.22524 0.95369 0.83987 1.00336 1.87918 1.20346 1.26235 1.94454 1.23570 0.80982 0.97595 0.94960 0.87731 1.23565 0.96265 0.99219 0.97522 1.22164 0.92710 0.84399 1.00209 1.60122 1.04267 1.55313 1.06319 1.21967 0.93707 0.99443 0.94945 1.20119 0.83690 0.82719 0.84952 1.90671 1.78583 1.47081 1.25466 1.46440 1.22238 1.49212 1.18366 1.19093 0.80954 0.89820 0.97018 1.21188 1.05061 1.30206 1.01829 0.91983 1.24948 0.97730 0.94834 0.96473 1.69962 1.24577 1.29030 1.28686 0.86474 0.79974 0.78136 0.82321 1.20081 1.21051 1.20061 1.24554 0.76811 0.89429 0.78641 1.90690 1.46201 1.71745 1.30935 1.84607 1.50682 1.31586 1.65831 1.22186 0.92936 0.96512 0.93930 1.21762 1.00857 1.03195 0.94122 1.21536 0.97980 0.95225 1.03594 0.91230 0.91988 0.91937 0.93220 0.93196 0.87394 0.89501 0.81306 0.88408 0.92110 0.77801 0.95541 0.95479 0.92368 0.73369 0.92063 0.91872 0.90430 0.91250 0.90982 0.93046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 10.28 37.16 0.38 -0.65 16 2 C 0.05 0.45 6.50 37.16 0.24 0.69 16 3 O -0.37 -3.81 9.56 -35.23 -0.34 -4.15 16 4 C 0.09 0.90 3.65 -25.92 -0.09 0.80 16 5 H 0.10 1.10 7.69 -51.93 -0.40 0.70 16 6 C -0.13 -1.40 6.52 -25.92 -0.17 -1.57 16 7 C 0.10 1.11 0.84 -131.94 -0.11 1.00 16 8 N -0.63 -8.02 4.99 -101.57 -0.51 -8.53 16 9 C 0.03 0.44 5.63 -4.98 -0.03 0.41 16 10 C 0.50 9.60 7.88 -10.98 -0.09 9.52 16 11 O -0.54 -12.43 16.32 5.55 0.09 -12.33 16 12 N -0.71 -14.64 5.55 -61.47 -0.34 -14.98 16 13 C 0.25 6.58 5.43 -5.19 -0.03 6.55 16 14 C -0.54 -14.63 9.28 -34.44 -0.32 -14.95 16 15 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 16 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 17 N -0.89 -25.90 13.29 55.43 0.74 -25.16 16 18 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 19 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 20 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 22 C 0.47 5.40 5.12 36.00 0.18 5.58 16 23 O -0.51 -6.93 16.17 -18.75 -0.30 -7.23 16 24 O -0.52 -5.00 12.44 -39.27 -0.49 -5.49 16 25 C -0.05 -0.55 1.26 -153.70 -0.19 -0.74 16 26 C -0.14 -1.33 8.07 37.16 0.30 -1.03 16 27 C -0.13 -1.23 7.28 37.16 0.27 -0.96 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.11 1.25 6.82 -51.93 -0.35 0.90 16 34 H 0.09 0.95 7.49 -51.93 -0.39 0.56 16 35 H 0.36 4.83 7.74 -39.29 -0.30 4.53 16 36 H 0.10 1.23 7.31 -51.93 -0.38 0.85 16 37 H 0.06 0.78 6.73 -51.93 -0.35 0.43 16 38 H 0.39 6.87 8.32 -40.82 -0.34 6.53 16 39 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 42 H 0.41 2.33 9.10 45.56 0.41 2.74 16 43 H 0.06 0.56 8.11 -51.93 -0.42 0.14 16 44 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.08 0.80 7.52 -51.93 -0.39 0.41 16 46 H 0.07 0.76 7.01 -51.93 -0.36 0.39 16 47 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.05 0.49 7.72 -51.93 -0.40 0.09 16 LS Contribution 393.15 15.07 5.92 5.92 Total: -1.00 -33.22 393.15 -7.01 -40.23 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: -7.02 Total: 9.68 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: 0.25 Total: 6.33 kcal Atomic # 7 Polarization: -48.56 SS G_CDS: -0.11 Total: -48.67 kcal Atomic # 8 Polarization: -28.16 SS G_CDS: -1.04 Total: -29.20 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.22 -7.01 -40.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001596833733.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.007 kcal (2) G-P(sol) polarization free energy of solvation -33.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds