Wall clock time and date at job start Tue Mar 31 2020 15:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42897 * 109.47422 * 2 1 4 4 C 1.42896 * 114.00229 * 180.02562 * 3 2 1 5 5 H 1.08998 * 112.84986 * 18.80315 * 4 3 2 6 6 C 1.54056 * 113.68786 * 247.52604 * 4 3 2 7 7 C 1.53775 * 86.98375 * 270.86995 * 6 4 3 8 8 N 1.46904 * 113.61465 * 89.16458 * 7 6 4 9 9 C 1.46903 * 111.00071 * 67.34120 * 8 7 6 10 10 C 1.50695 * 109.47175 * 185.06914 * 9 8 7 11 11 O 1.21288 * 120.00197 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00153 * 179.97438 * 10 9 8 13 13 C 1.46502 * 120.00106 * 179.97438 * 12 10 9 14 14 C 1.50703 * 109.46887 * 179.72641 * 13 12 10 15 15 H 1.07998 * 120.00208 * 0.02562 * 14 13 12 16 16 C 1.37882 * 119.99656 * 179.97438 * 14 13 12 17 17 N 1.31515 * 120.00006 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 119.99798 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47324 * 0.02562 * 18 16 14 20 20 H 1.48511 * 109.46768 * 120.00473 * 18 16 14 21 21 H 1.48493 * 109.47616 * 240.00239 * 18 16 14 22 22 C 1.50704 * 113.61456 * 219.97497 * 7 6 4 23 23 O 1.20827 * 119.99733 * 12.61315 * 22 7 6 24 24 O 1.34230 * 120.00215 * 192.60516 * 22 7 6 25 25 C 1.53777 * 87.17690 * 334.57219 * 7 6 4 26 26 C 1.52993 * 113.61482 * 140.02324 * 25 7 6 27 27 C 1.53002 * 113.61179 * 270.84088 * 25 7 6 28 28 H 1.08993 * 109.47363 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.46731 * 300.00672 * 1 2 3 30 30 H 1.08995 * 109.46967 * 59.99810 * 1 2 3 31 31 H 1.09001 * 109.47246 * 239.99760 * 2 1 3 32 32 H 1.09001 * 109.46991 * 119.99759 * 2 1 3 33 33 H 1.09000 * 113.61196 * 156.36691 * 6 4 3 34 34 H 1.09003 * 113.69484 * 25.39051 * 6 4 3 35 35 H 1.00894 * 111.00157 * 191.29615 * 8 7 6 36 36 H 1.08999 * 109.47089 * 65.06360 * 9 8 7 37 37 H 1.09005 * 109.47204 * 305.06915 * 9 8 7 38 38 H 0.97003 * 119.99630 * 359.72870 * 12 10 9 39 39 H 1.08999 * 109.47193 * 299.72810 * 13 12 10 40 40 H 1.09000 * 109.46826 * 59.72510 * 13 12 10 41 41 H 0.96997 * 119.99992 * 179.97438 * 17 16 14 42 42 H 0.96694 * 116.99755 * 180.02562 * 24 22 7 43 43 H 1.09000 * 109.47673 * 59.99826 * 26 25 7 44 44 H 1.09006 * 109.47465 * 179.97438 * 26 25 7 45 45 H 1.09003 * 109.47571 * 300.00030 * 26 25 7 46 46 H 1.08997 * 109.47091 * 58.17850 * 27 25 7 47 47 H 1.09002 * 109.47114 * 178.17730 * 27 25 7 48 48 H 1.09001 * 109.47072 * 298.17630 * 27 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 1 3.9278 0.5456 -0.3247 6 6 4.0059 2.0463 1.3029 7 6 3.8419 3.4319 0.6564 8 7 2.5287 4.0435 0.9007 9 6 2.3620 4.3829 2.3203 10 6 0.9627 4.8910 2.5543 11 8 0.1813 4.9638 1.6295 12 7 0.5795 5.2646 3.7912 13 6 -0.7807 5.7591 4.0186 14 6 -0.9540 6.1002 5.4762 15 1 -0.1331 5.9628 6.1643 16 6 -2.1605 6.5887 5.9311 17 7 -3.1601 6.7565 5.0931 18 14 -2.3756 7.0108 7.7380 19 1 -1.1110 6.7332 8.4652 20 1 -2.7181 8.4496 7.8728 21 1 -3.4687 6.1860 8.3124 22 6 4.9864 4.3701 0.9409 23 8 6.0108 3.9453 1.4206 24 8 4.8678 5.6776 0.6613 25 6 3.9484 2.7252 -0.7052 26 6 2.9862 3.2768 -1.7590 27 6 5.3839 2.5989 -1.2194 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 5.0443 1.7697 1.4852 34 1 3.3667 1.8915 2.1722 35 1 2.3935 4.8551 0.3167 36 1 3.0799 5.1553 2.5959 37 1 2.5325 3.4947 2.9287 38 1 1.2031 5.2027 4.5316 39 1 -0.9490 6.6505 3.4143 40 1 -1.4990 4.9889 3.7377 41 1 -4.0089 7.0998 5.4132 42 1 5.6287 6.2399 0.8610 43 1 3.1951 4.3338 -1.9240 44 1 3.1183 2.7307 -2.6931 45 1 1.9599 3.1593 -1.4110 46 1 5.9836 2.0516 -0.4921 47 1 5.3841 2.0619 -2.1680 48 1 5.8066 3.5930 -1.3645 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001596833735.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:48:32 Heat of formation + Delta-G solvation = -149.413722 kcal Electronic energy + Delta-G solvation = -29811.732841 eV Core-core repulsion = 25674.684563 eV Total energy + Delta-G solvation = -4137.048278 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.65344 -39.37983 -38.66483 -36.82038 -36.27500 -34.35287 -33.85780 -32.27690 -31.23047 -30.33967 -28.37124 -27.36805 -26.60313 -24.75175 -23.13658 -22.62765 -22.37015 -21.56339 -19.62652 -18.68827 -18.19769 -17.63152 -17.19226 -16.35127 -15.97689 -15.69820 -15.59128 -15.46664 -15.15394 -14.90247 -14.45696 -14.14593 -13.86897 -13.72849 -13.31136 -13.12924 -12.93355 -12.73627 -12.58755 -12.37301 -12.24128 -12.19595 -11.99950 -11.90397 -11.74121 -11.49546 -11.43366 -11.37087 -11.17286 -10.94562 -10.90719 -10.87154 -10.46199 -10.37162 -10.29960 -9.42295 -9.35492 -9.01575 -8.71401 -8.45116 -7.82190 -6.14816 -4.21382 1.94056 2.81523 3.24403 3.31374 3.34373 3.40653 3.44481 3.57444 4.11287 4.16438 4.34859 4.37799 4.58240 4.80150 4.90609 5.02621 5.05984 5.10333 5.20162 5.21286 5.33811 5.35831 5.38194 5.42614 5.46226 5.51327 5.59027 5.67194 5.70358 5.79600 5.84874 5.85080 5.95175 6.08557 6.23049 6.27772 6.51403 6.75126 7.26394 7.30981 7.36096 7.49225 7.55935 7.68766 7.70431 7.99761 8.67457 8.81964 9.16569 9.45413 10.95415 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.013969 B = 0.003118 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.983011 B = 8977.770779 C =10155.717407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.331 6.331 4 C 0.089 3.911 5 H 0.077 0.923 6 C -0.138 4.138 7 C 0.110 3.890 8 N -0.611 5.611 9 C 0.036 3.964 10 C 0.502 3.498 11 O -0.536 6.536 12 N -0.716 5.716 13 C 0.252 3.748 14 C -0.542 4.542 15 H 0.063 0.937 16 C 0.063 3.937 17 N -0.885 5.885 18 Si 0.903 3.097 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.282 1.282 22 C 0.460 3.540 23 O -0.516 6.516 24 O -0.515 6.515 25 C -0.060 4.060 26 C -0.134 4.134 27 C -0.135 4.135 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.043 0.957 32 H 0.044 0.956 33 H 0.106 0.894 34 H 0.091 0.909 35 H 0.362 0.638 36 H 0.051 0.949 37 H 0.097 0.903 38 H 0.389 0.611 39 H 0.026 0.974 40 H 0.027 0.973 41 H 0.265 0.735 42 H 0.406 0.594 43 H 0.053 0.947 44 H 0.054 0.946 45 H 0.091 0.909 46 H 0.066 0.934 47 H 0.070 0.930 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.790 -11.462 -12.405 24.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.248 6.248 4 C 0.030 3.970 5 H 0.095 0.905 6 C -0.176 4.176 7 C 0.015 3.985 8 N -0.244 5.244 9 C -0.096 4.096 10 C 0.286 3.714 11 O -0.414 6.414 12 N -0.365 5.365 13 C 0.131 3.869 14 C -0.580 4.580 15 H 0.081 0.919 16 C -0.140 4.140 17 N -0.522 5.522 18 Si 0.730 3.270 19 H -0.197 1.197 20 H -0.208 1.208 21 H -0.208 1.208 22 C 0.299 3.701 23 O -0.403 6.403 24 O -0.326 6.326 25 C -0.060 4.060 26 C -0.191 4.191 27 C -0.193 4.193 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.125 0.875 34 H 0.109 0.891 35 H 0.184 0.816 36 H 0.069 0.931 37 H 0.115 0.885 38 H 0.221 0.779 39 H 0.044 0.956 40 H 0.045 0.955 41 H 0.075 0.925 42 H 0.264 0.736 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.110 0.890 46 H 0.085 0.915 47 H 0.089 0.911 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 16.458 -12.122 -12.979 24.212 hybrid contribution 1.465 1.337 1.757 2.649 sum 17.923 -10.785 -11.222 23.738 Atomic orbital electron populations 1.21708 0.93476 1.01752 1.03844 1.22530 0.95938 0.84279 0.99352 1.88163 1.17731 1.24947 1.93983 1.22772 0.83209 0.96349 0.94679 0.90527 1.23682 1.02764 0.91639 0.99484 1.22369 0.84584 0.91494 1.00045 1.59934 1.23537 1.35775 1.05151 1.21893 0.96157 1.00791 0.90745 1.20123 0.88599 0.78849 0.83858 1.90676 1.54062 1.54221 1.42396 1.46431 1.17243 1.64528 1.08315 1.19078 0.76785 0.94739 0.96288 1.21274 0.98517 1.45030 0.93224 0.91916 1.24952 0.95576 0.95209 0.98306 1.69986 1.03134 1.44514 1.34613 0.86373 0.78223 0.78110 0.84268 1.19669 1.20828 1.20799 1.25024 0.89874 0.81685 0.73479 1.90669 1.31183 1.77473 1.40945 1.84611 1.48251 1.20831 1.78931 1.22119 0.96528 0.94810 0.92589 1.21581 1.01162 0.99925 0.96449 1.21716 0.93335 1.02473 1.01743 0.91581 0.91339 0.91776 0.93895 0.93757 0.87546 0.89088 0.81550 0.93068 0.88491 0.77929 0.95623 0.95510 0.92530 0.73551 0.92796 0.92740 0.88984 0.91530 0.91117 0.92222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 10.28 37.16 0.38 -1.18 16 2 C 0.06 0.55 6.50 37.16 0.24 0.79 16 3 O -0.33 -4.04 8.31 -35.23 -0.29 -4.33 16 4 C 0.09 0.89 3.80 -25.77 -0.10 0.80 16 5 H 0.08 0.61 7.83 -51.93 -0.41 0.21 16 6 C -0.14 -1.47 6.49 -25.78 -0.17 -1.63 16 7 C 0.11 1.26 0.80 -131.94 -0.11 1.16 16 8 N -0.61 -8.52 4.33 -101.56 -0.44 -8.96 16 9 C 0.04 0.54 5.77 -4.98 -0.03 0.51 16 10 C 0.50 10.08 7.88 -10.99 -0.09 9.99 16 11 O -0.54 -12.90 16.31 5.55 0.09 -12.81 16 12 N -0.72 -15.19 5.55 -61.47 -0.34 -15.53 16 13 C 0.25 6.72 5.43 -5.19 -0.03 6.70 16 14 C -0.54 -14.80 9.28 -34.44 -0.32 -15.12 16 15 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 16 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 17 N -0.88 -26.19 13.29 55.43 0.74 -25.45 16 18 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 19 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 C 0.46 5.37 5.17 36.01 0.19 5.55 16 23 O -0.52 -6.87 16.32 -18.75 -0.31 -7.17 16 24 O -0.51 -5.19 13.00 -39.26 -0.51 -5.70 16 25 C -0.06 -0.59 1.26 -153.70 -0.19 -0.79 16 26 C -0.13 -1.40 8.15 37.15 0.30 -1.09 16 27 C -0.14 -1.12 8.01 37.16 0.30 -0.82 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.85 8.14 -51.92 -0.42 0.43 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.11 1.05 6.85 -51.93 -0.36 0.70 16 34 H 0.09 1.04 6.75 -51.93 -0.35 0.69 16 35 H 0.36 5.34 8.01 -39.30 -0.31 5.02 16 36 H 0.05 0.70 7.49 -51.93 -0.39 0.31 16 37 H 0.10 1.32 6.59 -51.93 -0.34 0.98 16 38 H 0.39 7.12 8.32 -40.82 -0.34 6.78 16 39 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 42 H 0.41 2.43 9.10 45.56 0.41 2.84 16 43 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.09 1.19 6.59 -51.93 -0.34 0.85 16 46 H 0.07 0.55 7.27 -51.93 -0.38 0.18 16 47 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.06 0.52 7.51 -51.93 -0.39 0.13 16 LS Contribution 391.89 15.07 5.91 5.91 Total: -1.00 -34.11 391.89 -6.85 -40.96 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: -6.95 Total: 10.64 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: 0.29 Total: 6.52 kcal Atomic # 7 Polarization: -49.90 SS G_CDS: -0.04 Total: -49.94 kcal Atomic # 8 Polarization: -29.00 SS G_CDS: -1.02 Total: -30.01 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.11 -6.85 -40.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001596833735.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.453 kcal (2) G-P(sol) polarization free energy of solvation -34.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds