Wall clock time and date at job start Tue Mar 31 2020 15:48:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42896 * 109.47536 * 2 1 4 4 C 1.42902 * 114.00005 * 180.02562 * 3 2 1 5 5 H 1.08997 * 112.85278 * 21.69473 * 4 3 2 6 6 C 1.53777 * 113.61522 * 250.49399 * 4 3 2 7 7 C 1.53785 * 87.08406 * 220.02062 * 6 4 3 8 8 N 1.46892 * 113.61358 * 270.88652 * 7 6 4 9 9 C 1.46901 * 110.99879 * 294.66660 * 8 7 6 10 10 C 1.50698 * 109.47352 * 174.79511 * 9 8 7 11 11 O 1.21284 * 119.99740 * 359.97438 * 10 9 8 12 12 N 1.34778 * 120.00269 * 179.97438 * 10 9 8 13 13 C 1.46506 * 119.99999 * 179.97438 * 12 10 9 14 14 C 1.50691 * 109.46983 * 180.02562 * 13 12 10 15 15 H 1.08007 * 120.00151 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00138 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00228 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 120.00058 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.46928 * 90.00132 * 18 16 14 20 20 H 1.48489 * 109.47511 * 210.00290 * 18 16 14 21 21 H 1.48506 * 109.46827 * 330.00666 * 18 16 14 22 22 C 1.50703 * 113.61551 * 140.06483 * 7 6 4 23 23 O 1.20828 * 119.99666 * 347.44763 * 22 7 6 24 24 O 1.34219 * 120.00103 * 167.45201 * 22 7 6 25 25 C 1.53786 * 113.61290 * 152.99503 * 4 3 2 26 26 C 1.53001 * 113.61249 * 25.43796 * 25 4 3 27 27 C 1.52991 * 113.61889 * 254.52760 * 25 4 3 28 28 H 1.09000 * 109.46512 * 300.00433 * 1 2 3 29 29 H 1.09005 * 109.47147 * 59.99498 * 1 2 3 30 30 H 1.08997 * 109.47488 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47088 * 239.99710 * 2 1 3 32 32 H 1.08998 * 109.47517 * 120.00581 * 2 1 3 33 33 H 1.09003 * 113.61544 * 105.47062 * 6 4 3 34 34 H 1.09006 * 113.68970 * 334.57809 * 6 4 3 35 35 H 1.00899 * 111.00044 * 170.71246 * 8 7 6 36 36 H 1.09003 * 109.47230 * 54.79354 * 9 8 7 37 37 H 1.09000 * 109.47102 * 294.79119 * 9 8 7 38 38 H 0.96995 * 119.99921 * 359.97438 * 12 10 9 39 39 H 1.09003 * 109.47215 * 59.99863 * 13 12 10 40 40 H 1.09000 * 109.46833 * 299.99802 * 13 12 10 41 41 H 0.97006 * 120.00335 * 179.97438 * 17 16 14 42 42 H 0.96700 * 117.00554 * 179.97438 * 24 22 7 43 43 H 1.09002 * 109.47000 * 163.16219 * 26 25 4 44 44 H 1.09007 * 109.46973 * 283.15953 * 26 25 4 45 45 H 1.09001 * 109.47504 * 43.16048 * 26 25 4 46 46 H 1.09004 * 109.47405 * 322.50973 * 27 25 4 47 47 H 1.09001 * 109.47106 * 82.50433 * 27 25 4 48 48 H 1.08994 * 109.47717 * 202.50253 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4599 -0.0006 5 1 3.9264 0.5630 -0.3722 6 6 4.0085 1.9773 1.3274 7 6 4.9921 2.8074 0.4856 8 7 6.2361 2.0961 0.1629 9 6 7.0162 1.8224 1.3773 10 6 8.2172 0.9833 1.0244 11 8 8.4047 0.6462 -0.1255 12 7 9.0830 0.6076 1.9865 13 6 10.2503 -0.2086 1.6435 14 6 11.0505 -0.4893 2.8892 15 1 10.7226 -0.0984 3.8412 16 6 12.2018 -1.2441 2.8135 17 7 12.8999 -1.4896 3.9007 18 14 12.7693 -1.9195 1.1669 19 1 13.6679 -0.9355 0.5115 20 1 13.5019 -3.1934 1.3803 21 1 11.5892 -2.1664 0.2999 22 6 5.2337 4.1917 1.0301 23 8 4.5160 4.6342 1.8955 24 8 6.2461 4.9330 0.5536 25 6 3.9457 2.7602 -0.6404 26 6 2.9374 3.9098 -0.5886 27 6 4.5509 2.5611 -2.0314 28 1 -0.3632 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 4.4903 1.2035 1.9250 34 1 3.3082 2.5824 1.9034 35 1 6.7835 2.6118 -0.5098 36 1 6.3955 1.2850 2.0943 37 1 7.3469 2.7635 1.8165 38 1 8.9333 0.8776 2.9060 39 1 10.8708 0.3282 0.9259 40 1 9.9192 -1.1499 1.2050 41 1 13.7097 -2.0210 3.8476 42 1 6.3614 5.8147 0.9334 43 1 3.4515 4.8527 -0.7747 44 1 2.1723 3.7566 -1.3498 45 1 2.4699 3.9390 0.3957 46 1 5.0995 1.6195 -2.0576 47 1 3.7538 2.5379 -2.7745 48 1 5.2305 3.3839 -2.2532 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001596833736.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:48:36 Heat of formation + Delta-G solvation = -151.981127 kcal Electronic energy + Delta-G solvation = -29359.222215 eV Core-core repulsion = 25222.062606 eV Total energy + Delta-G solvation = -4137.159609 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.74583 -39.44552 -38.95555 -37.15865 -36.36774 -34.52769 -34.04056 -32.37984 -31.40707 -30.51186 -28.73393 -27.68687 -26.92876 -24.89059 -23.29799 -22.77453 -22.10492 -21.53947 -19.93190 -18.79504 -18.29555 -17.85065 -17.22614 -16.53649 -16.26751 -15.86574 -15.77080 -15.63862 -15.44970 -15.02422 -14.56680 -14.26346 -13.90386 -13.84525 -13.47083 -13.29799 -13.09981 -12.96339 -12.72939 -12.63900 -12.47426 -12.33374 -12.26711 -12.14569 -11.83476 -11.79067 -11.56849 -11.50594 -11.21974 -11.05577 -11.03061 -10.79887 -10.75285 -10.58562 -9.99814 -9.56992 -9.52899 -9.31001 -8.80905 -8.76080 -8.18942 -6.24003 -4.26604 1.86863 2.65961 3.15802 3.24680 3.30087 3.35540 3.39808 3.50298 3.97476 4.01382 4.25583 4.31132 4.35190 4.70670 4.81744 4.89682 4.94283 4.99515 5.11037 5.14145 5.17059 5.19436 5.27437 5.30017 5.39490 5.41951 5.47422 5.60384 5.64883 5.65788 5.66806 5.78056 5.84981 5.90605 6.05676 6.18964 6.22216 6.49709 6.78201 7.02341 7.04304 7.06467 7.17785 7.35763 7.61547 8.09744 8.47074 8.72057 8.88133 9.35828 10.87896 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.014961 B = 0.002807 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.074983 B = 9971.492577 C =10787.666754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.370 6.370 4 C 0.087 3.913 5 H 0.104 0.896 6 C -0.133 4.133 7 C 0.100 3.900 8 N -0.627 5.627 9 C 0.033 3.967 10 C 0.503 3.497 11 O -0.542 6.542 12 N -0.706 5.706 13 C 0.222 3.778 14 C -0.545 4.545 15 H 0.079 0.921 16 C 0.077 3.923 17 N -0.892 5.892 18 Si 0.877 3.123 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.260 1.260 22 C 0.465 3.535 23 O -0.509 6.509 24 O -0.515 6.515 25 C -0.050 4.050 26 C -0.127 4.127 27 C -0.138 4.138 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.050 0.950 32 H 0.049 0.951 33 H 0.086 0.914 34 H 0.110 0.890 35 H 0.367 0.633 36 H 0.102 0.898 37 H 0.059 0.941 38 H 0.396 0.604 39 H 0.020 0.980 40 H 0.026 0.974 41 H 0.268 0.732 42 H 0.408 0.592 43 H 0.050 0.950 44 H 0.071 0.929 45 H 0.068 0.932 46 H 0.077 0.923 47 H 0.060 0.940 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.819 9.588 -8.497 26.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.289 6.289 4 C 0.029 3.971 5 H 0.122 0.878 6 C -0.171 4.171 7 C 0.006 3.994 8 N -0.261 5.261 9 C -0.099 4.099 10 C 0.287 3.713 11 O -0.420 6.420 12 N -0.355 5.355 13 C 0.100 3.900 14 C -0.582 4.582 15 H 0.097 0.903 16 C -0.126 4.126 17 N -0.529 5.529 18 Si 0.704 3.296 19 H -0.199 1.199 20 H -0.209 1.209 21 H -0.185 1.185 22 C 0.304 3.696 23 O -0.395 6.395 24 O -0.327 6.327 25 C -0.051 4.051 26 C -0.184 4.184 27 C -0.195 4.195 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.105 0.895 34 H 0.128 0.872 35 H 0.189 0.811 36 H 0.120 0.880 37 H 0.077 0.923 38 H 0.229 0.771 39 H 0.038 0.962 40 H 0.044 0.956 41 H 0.078 0.922 42 H 0.267 0.733 43 H 0.069 0.931 44 H 0.090 0.910 45 H 0.087 0.913 46 H 0.096 0.904 47 H 0.079 0.921 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -23.140 8.497 -9.187 26.307 hybrid contribution 1.149 1.093 0.395 1.635 sum -21.991 9.590 -8.793 25.551 Atomic orbital electron populations 1.21740 0.93908 1.02169 1.02982 1.22519 0.95398 0.83966 1.00323 1.87919 1.20294 1.26247 1.94467 1.23562 0.81018 0.97588 0.94939 0.87806 1.23655 0.96536 0.99105 0.97808 1.22131 0.92670 0.85129 0.99481 1.60063 1.05482 1.48705 1.11879 1.21929 0.94920 0.99723 0.93373 1.20176 0.83713 0.81262 0.86137 1.90666 1.75244 1.56318 1.19767 1.46161 1.25922 1.53101 1.10364 1.19484 0.83029 0.90234 0.97235 1.21088 1.08556 1.34740 0.93859 0.90277 1.24802 0.95831 0.95180 0.96831 1.69881 1.16425 1.38690 1.27939 0.86808 0.79704 0.78922 0.84196 1.19863 1.20902 1.18457 1.24547 0.76908 0.88676 0.79450 1.90697 1.46245 1.72524 1.30025 1.84566 1.50555 1.32614 1.64988 1.22123 0.92653 0.96213 0.94080 1.21546 0.97982 0.95231 1.03631 1.21715 1.00682 1.03431 0.93689 0.91924 0.91971 0.91213 0.93208 0.93235 0.89543 0.87219 0.81129 0.87959 0.92314 0.77062 0.96169 0.95634 0.92235 0.73253 0.93056 0.90986 0.91252 0.90393 0.92118 0.92161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 10.28 37.16 0.38 -0.63 16 2 C 0.05 0.44 6.51 37.16 0.24 0.69 16 3 O -0.37 -3.72 9.54 -35.23 -0.34 -4.05 16 4 C 0.09 0.87 3.63 -25.92 -0.09 0.77 16 5 H 0.10 1.06 7.72 -51.93 -0.40 0.66 16 6 C -0.13 -1.39 6.46 -25.92 -0.17 -1.56 16 7 C 0.10 1.07 0.80 -131.94 -0.11 0.96 16 8 N -0.63 -7.58 4.78 -101.56 -0.49 -8.06 16 9 C 0.03 0.43 5.79 -4.98 -0.03 0.40 16 10 C 0.50 9.04 7.88 -10.99 -0.09 8.95 16 11 O -0.54 -11.63 16.32 5.55 0.09 -11.54 16 12 N -0.71 -13.77 5.55 -61.47 -0.34 -14.11 16 13 C 0.22 5.35 4.50 -5.19 -0.02 5.33 16 14 C -0.54 -14.73 9.83 -34.44 -0.34 -15.07 16 15 H 0.08 2.23 7.84 -52.48 -0.41 1.82 16 16 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 17 N -0.89 -26.30 13.96 55.43 0.77 -25.52 16 18 Si 0.88 21.21 27.47 -169.99 -4.67 16.54 16 19 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.26 -6.24 6.54 56.52 0.37 -5.87 16 22 C 0.46 5.21 5.37 36.01 0.19 5.40 16 23 O -0.51 -6.77 16.18 -18.75 -0.30 -7.08 16 24 O -0.52 -4.80 13.04 -39.23 -0.51 -5.31 16 25 C -0.05 -0.49 1.26 -153.69 -0.19 -0.68 16 26 C -0.13 -1.20 7.29 37.16 0.27 -0.93 16 27 C -0.14 -1.26 8.37 37.15 0.31 -0.95 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.38 8.14 -51.92 -0.42 -0.05 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.09 0.87 6.61 -51.93 -0.34 0.53 16 34 H 0.11 1.23 6.82 -51.93 -0.35 0.87 16 35 H 0.37 4.62 8.04 -39.29 -0.32 4.31 16 36 H 0.10 1.19 6.46 -51.93 -0.34 0.85 16 37 H 0.06 0.71 7.63 -51.93 -0.40 0.31 16 38 H 0.40 6.80 8.32 -40.82 -0.34 6.47 16 39 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 40 H 0.03 0.65 7.20 -51.93 -0.37 0.28 16 41 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 42 H 0.41 2.19 9.10 45.56 0.41 2.60 16 43 H 0.05 0.48 7.69 -51.93 -0.40 0.08 16 44 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.07 0.74 7.04 -51.93 -0.37 0.38 16 46 H 0.08 0.79 7.57 -51.93 -0.39 0.40 16 47 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 48 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 390.08 15.07 5.88 5.88 Total: -1.00 -33.24 390.08 -6.60 -39.84 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -6.96 Total: 8.66 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: 0.26 Total: 4.75 kcal Atomic # 7 Polarization: -47.64 SS G_CDS: -0.05 Total: -47.70 kcal Atomic # 8 Polarization: -26.92 SS G_CDS: -1.06 Total: -27.98 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.67 Total: 16.54 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.24 -6.60 -39.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001596833736.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.142 kcal (2) G-P(sol) polarization free energy of solvation -33.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds