Wall clock time and date at job start Tue Mar 31 2020 15:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46902 * 111.00138 * 2 1 4 4 C 1.46896 * 111.00256 * 123.95956 * 2 1 3 5 5 C 1.52997 * 109.47114 * 66.04620 * 4 2 1 6 6 C 1.53006 * 109.47127 * 180.02562 * 5 4 2 7 7 N 1.46504 * 109.46883 * 180.02562 * 6 5 4 8 8 C 1.46494 * 120.00068 * 90.00086 * 7 6 5 9 9 C 1.50700 * 109.47370 * 89.99668 * 8 7 6 10 10 H 1.08001 * 119.99956 * 359.97438 * 9 8 7 11 11 C 1.37876 * 120.00002 * 180.02562 * 9 8 7 12 12 N 1.31514 * 120.00061 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 119.99903 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47434 * 0.02562 * 13 11 9 15 15 H 1.48511 * 109.47246 * 119.99759 * 13 11 9 16 16 H 1.48500 * 109.47186 * 239.99395 * 13 11 9 17 17 C 1.34779 * 119.99616 * 269.99507 * 7 6 5 18 18 O 1.21275 * 120.00054 * 0.02562 * 17 7 6 19 19 C 1.50698 * 119.99529 * 180.02562 * 17 7 6 20 20 H 1.08998 * 110.33595 * 305.79260 * 19 17 7 21 21 C 1.54483 * 110.37410 * 68.17069 * 19 17 7 22 22 C 1.54504 * 104.06557 * 142.80597 * 21 19 17 23 23 C 1.54475 * 104.06237 * 359.97438 * 22 21 19 24 24 H 1.09006 * 110.37475 * 94.85335 * 23 22 21 25 25 C 1.50699 * 110.37336 * 217.19003 * 23 22 21 26 26 O 1.20826 * 120.00349 * 111.83149 * 25 23 22 27 27 O 1.34232 * 119.99689 * 291.83341 * 25 23 22 28 28 O 1.44423 * 104.80633 * 336.02170 * 23 22 21 29 29 H 1.08999 * 109.47263 * 296.03897 * 1 2 3 30 30 H 1.08998 * 109.47389 * 56.04155 * 1 2 3 31 31 H 1.08999 * 109.47174 * 176.04012 * 1 2 3 32 32 H 1.08998 * 109.47449 * 183.95460 * 3 2 1 33 33 H 1.08993 * 109.47569 * 303.96050 * 3 2 1 34 34 H 1.09000 * 109.46406 * 63.95639 * 3 2 1 35 35 H 1.08996 * 109.47194 * 306.04788 * 4 2 1 36 36 H 1.09001 * 109.47271 * 186.04351 * 4 2 1 37 37 H 1.09001 * 109.47502 * 60.00479 * 5 4 2 38 38 H 1.09001 * 109.47289 * 300.00275 * 5 4 2 39 39 H 1.09001 * 109.47002 * 299.99574 * 6 5 4 40 40 H 1.08993 * 109.46955 * 60.00011 * 6 5 4 41 41 H 1.09002 * 109.47065 * 209.99666 * 8 7 6 42 42 H 1.09000 * 109.47308 * 329.99499 * 8 7 6 43 43 H 0.97006 * 119.99952 * 180.02562 * 12 11 9 44 44 H 1.09006 * 110.50355 * 261.44992 * 21 19 17 45 45 H 1.08996 * 110.51127 * 24.15453 * 21 19 17 46 46 H 1.08989 * 110.51139 * 241.35111 * 22 21 19 47 47 H 1.08997 * 110.50911 * 118.63828 * 22 21 19 48 48 H 0.96702 * 116.99677 * 179.97438 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7661 1.1375 5 6 1.6315 -2.2427 0.9701 6 6 2.1793 -3.0405 2.1552 7 7 1.8313 -4.4545 1.9945 8 6 2.7402 -5.3562 1.2826 9 6 3.7108 -5.9664 2.2606 10 1 3.6564 -5.7080 3.3079 11 6 4.6689 -6.8537 1.8184 12 7 4.7355 -7.1680 0.5431 13 14 5.8725 -7.6095 3.0307 14 1 5.5884 -7.0969 4.3952 15 1 5.7263 -9.0874 3.0174 16 1 7.2592 -7.2459 2.6435 17 6 0.6750 -4.9257 2.5019 18 8 -0.0775 -4.1791 3.0910 19 6 0.3173 -6.3803 2.3372 20 1 0.3532 -6.6624 1.2849 21 6 1.2727 -7.2664 3.1670 22 6 0.3668 -8.3989 3.6998 23 6 -1.0289 -8.0628 3.1295 24 1 -1.1993 -8.6045 2.1990 25 6 -2.1007 -8.3955 4.1353 26 8 -2.7367 -7.5098 4.6559 27 8 -2.3488 -9.6759 4.4529 28 8 -0.9944 -6.6400 2.8837 29 1 -0.3634 0.4511 0.9233 30 1 -0.3634 0.5740 -0.8524 31 1 -0.3633 -1.0252 -0.0710 32 1 3.0827 1.3433 -0.0709 33 1 1.5898 1.9164 -0.8523 34 1 1.7044 1.8722 0.9234 35 1 1.5611 -0.3875 2.0627 36 1 3.0797 -0.6612 1.1755 37 1 2.0659 -2.6214 0.0449 38 1 0.5472 -2.3476 0.9320 39 1 3.2636 -2.9357 2.1936 40 1 1.7446 -2.6617 3.0801 41 1 2.1644 -6.1466 0.8010 42 1 3.2902 -4.7955 0.5268 43 1 5.4095 -7.7926 0.2321 44 1 2.0615 -7.6739 2.5345 45 1 1.6997 -6.6981 3.9932 46 1 0.3459 -8.3905 4.7895 47 1 0.7076 -9.3662 3.3308 48 1 -3.0453 -9.8398 5.1033 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001598219521.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:27 Heat of formation + Delta-G solvation = -163.121139 kcal Electronic energy + Delta-G solvation = -29431.266801 eV Core-core repulsion = 25293.624125 eV Total energy + Delta-G solvation = -4137.642676 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.59936 -39.57994 -38.12581 -37.42359 -36.06708 -35.23521 -33.08270 -31.99328 -31.56677 -29.87364 -27.60035 -27.44419 -26.28958 -24.60881 -23.08698 -22.46354 -21.54962 -21.10204 -20.60306 -18.80376 -17.94635 -17.15521 -16.69206 -16.37969 -16.15543 -15.84760 -15.42047 -15.20029 -15.05262 -14.82254 -14.55964 -14.49304 -13.92054 -13.65814 -13.53529 -13.45048 -12.80960 -12.47428 -12.38667 -12.16351 -12.00118 -11.80832 -11.72875 -11.60395 -11.47118 -11.45070 -11.34274 -11.21834 -11.02103 -10.91574 -10.80692 -10.63132 -10.31712 -10.22909 -10.12348 -9.84611 -9.70537 -8.97646 -8.61396 -8.33744 -7.79275 -6.27497 -4.33758 2.18046 2.61129 3.14362 3.24449 3.26159 3.31546 3.60202 4.02002 4.23645 4.41612 4.72703 4.95750 5.01322 5.05503 5.09524 5.15917 5.25354 5.28782 5.33844 5.39052 5.43928 5.56286 5.64937 5.66095 5.70393 5.79379 5.79584 5.80482 5.92626 6.00715 6.01474 6.16413 6.36966 6.42170 6.46320 6.58467 6.64730 6.74060 6.89382 7.04804 7.07184 7.12253 7.47994 7.67588 7.88435 7.95250 8.23642 8.70406 8.94794 9.32463 10.78635 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.008018 B = 0.004392 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3491.434704 B = 6373.204861 C = 9391.860125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.548 5.548 3 C 0.025 3.975 4 C 0.059 3.941 5 C -0.130 4.130 6 C 0.125 3.875 7 N -0.591 5.591 8 C 0.233 3.767 9 C -0.534 4.534 10 H 0.064 0.936 11 C 0.067 3.933 12 N -0.888 5.888 13 Si 0.890 3.110 14 H -0.271 1.271 15 H -0.282 1.282 16 H -0.283 1.283 17 C 0.523 3.477 18 O -0.551 6.551 19 C 0.065 3.935 20 H 0.098 0.902 21 C -0.130 4.130 22 C -0.142 4.142 23 C 0.082 3.918 24 H 0.109 0.891 25 C 0.484 3.516 26 O -0.492 6.492 27 O -0.514 6.514 28 O -0.327 6.327 29 H 0.024 0.976 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.022 0.978 35 H 0.034 0.966 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.063 0.937 39 H 0.080 0.920 40 H 0.070 0.930 41 H 0.037 0.963 42 H 0.040 0.960 43 H 0.266 0.734 44 H 0.121 0.879 45 H 0.082 0.918 46 H 0.075 0.925 47 H 0.093 0.907 48 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.415 1.685 0.708 6.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.272 5.272 3 C -0.123 4.123 4 C -0.069 4.069 5 C -0.169 4.169 6 C 0.001 3.999 7 N -0.322 5.322 8 C 0.113 3.887 9 C -0.573 4.573 10 H 0.082 0.918 11 C -0.136 4.136 12 N -0.526 5.526 13 Si 0.717 3.283 14 H -0.196 1.196 15 H -0.207 1.207 16 H -0.209 1.209 17 C 0.309 3.691 18 O -0.430 6.430 19 C 0.005 3.995 20 H 0.116 0.884 21 C -0.168 4.168 22 C -0.179 4.179 23 C 0.023 3.977 24 H 0.127 0.873 25 C 0.324 3.676 26 O -0.378 6.378 27 O -0.327 6.327 28 O -0.245 6.245 29 H 0.042 0.958 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.041 0.959 35 H 0.052 0.948 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.098 0.902 40 H 0.088 0.912 41 H 0.055 0.945 42 H 0.058 0.942 43 H 0.075 0.925 44 H 0.140 0.860 45 H 0.101 0.899 46 H 0.094 0.906 47 H 0.112 0.888 48 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -6.573 2.234 0.343 6.951 hybrid contribution 0.217 -0.344 1.632 1.682 sum -6.356 1.890 1.976 6.919 Atomic orbital electron populations 1.22428 0.87467 1.02723 1.00023 1.61970 1.08056 1.13426 1.43726 1.22366 1.00786 0.89041 1.00137 1.22076 1.00091 0.93917 0.90862 1.21954 1.01656 0.93284 0.99968 1.21205 1.00323 0.80796 0.97611 1.48084 1.19639 1.09492 1.55013 1.19531 0.88270 0.88564 0.92287 1.21515 1.15014 1.25840 0.94925 0.91819 1.24900 0.97153 0.96428 0.95162 1.69928 1.34864 1.34231 1.13568 0.86558 0.81157 0.79082 0.81461 1.19596 1.20748 1.20857 1.19881 0.81615 0.88540 0.79026 1.90645 1.50693 1.58782 1.42873 1.22901 0.82735 0.94694 0.99177 0.88450 1.23092 0.97880 0.94693 1.01091 1.22982 0.91931 1.01224 1.01811 1.22354 0.92996 0.85993 0.96365 0.87339 1.23040 0.82927 0.80078 0.81538 1.90761 1.47905 1.48329 1.50759 1.84492 1.57921 1.29287 1.60990 1.89313 1.32106 1.19093 1.83954 0.95755 0.91764 0.90821 0.91355 0.91631 0.95912 0.94821 0.90596 0.90788 0.91844 0.90168 0.91172 0.94495 0.94205 0.92465 0.86032 0.89888 0.90601 0.88829 0.73024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.32 60.06 0.56 0.83 16 2 N -0.55 -7.20 5.02 -251.27 -1.26 -8.46 16 3 C 0.03 0.27 9.57 60.07 0.57 0.84 16 4 C 0.06 0.81 4.96 -3.83 -0.02 0.79 16 5 C -0.13 -2.07 5.46 -26.73 -0.15 -2.21 16 6 C 0.12 2.22 5.41 -4.04 -0.02 2.20 16 7 N -0.59 -11.85 2.46 -175.06 -0.43 -12.28 16 8 C 0.23 5.03 4.71 -5.20 -0.02 5.01 16 9 C -0.53 -12.36 6.38 -34.44 -0.22 -12.58 16 10 H 0.06 1.52 7.52 -52.49 -0.39 1.13 16 11 C 0.07 1.60 5.44 -17.82 -0.10 1.51 16 12 N -0.89 -22.44 13.29 55.43 0.74 -21.70 16 13 Si 0.89 18.98 29.54 -169.99 -5.02 13.96 16 14 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 15 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 16 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 17 C 0.52 11.07 6.97 -10.99 -0.08 10.99 16 18 O -0.55 -13.27 16.13 -13.64 -0.22 -13.49 16 19 C 0.07 1.22 2.78 -27.11 -0.08 1.14 16 20 H 0.10 1.68 7.12 -51.93 -0.37 1.31 16 21 C -0.13 -2.26 4.70 -25.16 -0.12 -2.38 16 22 C -0.14 -2.00 6.62 -25.17 -0.17 -2.16 16 23 C 0.08 1.22 3.82 -27.11 -0.10 1.12 16 24 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16 25 C 0.48 7.07 7.57 36.01 0.27 7.34 16 26 O -0.49 -9.19 17.31 -25.28 -0.44 -9.63 16 27 O -0.51 -5.29 13.42 -39.26 -0.53 -5.82 16 28 O -0.33 -6.32 10.17 -64.23 -0.65 -6.97 16 29 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.68 8.12 -51.93 -0.42 0.25 16 31 H 0.07 0.97 6.47 -51.93 -0.34 0.64 16 32 H 0.07 0.68 8.12 -51.93 -0.42 0.26 16 33 H 0.06 0.61 8.12 -51.93 -0.42 0.19 16 34 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 35 H 0.03 0.46 8.12 -51.93 -0.42 0.04 16 36 H 0.08 0.98 8.06 -51.93 -0.42 0.56 16 37 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.06 1.09 6.55 -51.93 -0.34 0.75 16 39 H 0.08 1.39 8.07 -51.93 -0.42 0.97 16 40 H 0.07 1.29 7.42 -51.93 -0.39 0.91 16 41 H 0.04 0.81 6.08 -51.93 -0.32 0.50 16 42 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 43 H 0.27 6.45 8.31 -40.82 -0.34 6.11 16 44 H 0.12 2.25 6.35 -51.93 -0.33 1.92 16 45 H 0.08 1.58 7.47 -51.93 -0.39 1.19 16 46 H 0.08 1.04 7.86 -51.94 -0.41 0.64 16 47 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 48 H 0.41 2.36 9.10 45.56 0.41 2.78 16 LS Contribution 390.03 15.07 5.88 5.88 Total: -1.00 -31.51 390.03 -8.64 -40.15 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -7.05 Total: 5.95 kcal Atomic # 6 Polarization: 12.08 SS G_CDS: 0.34 Total: 12.42 kcal Atomic # 7 Polarization: -41.49 SS G_CDS: -0.95 Total: -42.45 kcal Atomic # 8 Polarization: -34.07 SS G_CDS: -1.84 Total: -35.91 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.02 Total: 13.96 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.51 -8.64 -40.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598219521.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.974 kcal (2) G-P(sol) polarization free energy of solvation -31.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds