Wall clock time and date at job start Tue Mar 31 2020 15:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46902 * 111.00138 * 2 1 4 4 C 1.46896 * 111.00256 * 123.95956 * 2 1 3 5 5 C 1.52997 * 109.47114 * 66.04620 * 4 2 1 6 6 C 1.53006 * 109.47127 * 180.02562 * 5 4 2 7 7 N 1.46504 * 109.46883 * 180.02562 * 6 5 4 8 8 C 1.46494 * 120.00068 * 90.00086 * 7 6 5 9 9 C 1.50700 * 109.47370 * 89.99668 * 8 7 6 10 10 H 1.08001 * 119.99956 * 359.97438 * 9 8 7 11 11 C 1.37876 * 120.00002 * 180.02562 * 9 8 7 12 12 N 1.31514 * 120.00061 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 119.99903 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47434 * 0.02562 * 13 11 9 15 15 H 1.48511 * 109.47246 * 119.99759 * 13 11 9 16 16 H 1.48500 * 109.47186 * 239.99395 * 13 11 9 17 17 C 1.34779 * 119.99616 * 269.99507 * 7 6 5 18 18 O 1.21275 * 120.00054 * 0.02562 * 17 7 6 19 19 C 1.50698 * 119.99529 * 180.02562 * 17 7 6 20 20 H 1.08998 * 110.33595 * 305.79260 * 19 17 7 21 21 C 1.54483 * 110.37410 * 68.17069 * 19 17 7 22 22 C 1.54504 * 104.06557 * 142.80597 * 21 19 17 23 23 C 1.54475 * 104.06237 * 359.97438 * 22 21 19 24 24 H 1.09006 * 110.37475 * 94.85335 * 23 22 21 25 25 C 1.50699 * 110.37336 * 217.19003 * 23 22 21 26 26 O 1.20826 * 120.00349 * 111.83149 * 25 23 22 27 27 O 1.34232 * 119.99689 * 291.83341 * 25 23 22 28 28 O 1.44423 * 104.80633 * 336.02170 * 23 22 21 29 29 H 1.08999 * 109.47263 * 296.03897 * 1 2 3 30 30 H 1.08998 * 109.47389 * 56.04155 * 1 2 3 31 31 H 1.08999 * 109.47174 * 176.04012 * 1 2 3 32 32 H 1.08998 * 109.47449 * 183.95460 * 3 2 1 33 33 H 1.08993 * 109.47569 * 303.96050 * 3 2 1 34 34 H 1.09000 * 109.46406 * 63.95639 * 3 2 1 35 35 H 1.08996 * 109.47194 * 306.04788 * 4 2 1 36 36 H 1.09001 * 109.47271 * 186.04351 * 4 2 1 37 37 H 1.09001 * 109.47502 * 60.00479 * 5 4 2 38 38 H 1.09001 * 109.47289 * 300.00275 * 5 4 2 39 39 H 1.09001 * 109.47002 * 299.99574 * 6 5 4 40 40 H 1.08993 * 109.46955 * 60.00011 * 6 5 4 41 41 H 1.09002 * 109.47065 * 209.99666 * 8 7 6 42 42 H 1.09000 * 109.47308 * 329.99499 * 8 7 6 43 43 H 0.97006 * 119.99952 * 180.02562 * 12 11 9 44 44 H 1.09006 * 110.50355 * 261.44992 * 21 19 17 45 45 H 1.08996 * 110.51127 * 24.15453 * 21 19 17 46 46 H 1.08989 * 110.51139 * 241.35111 * 22 21 19 47 47 H 1.08997 * 110.50911 * 118.63828 * 22 21 19 48 48 H 0.96702 * 116.99677 * 179.97438 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7661 1.1375 5 6 1.6315 -2.2427 0.9701 6 6 2.1793 -3.0405 2.1552 7 7 1.8313 -4.4545 1.9945 8 6 2.7402 -5.3562 1.2826 9 6 3.7108 -5.9664 2.2606 10 1 3.6564 -5.7080 3.3079 11 6 4.6689 -6.8537 1.8184 12 7 4.7355 -7.1680 0.5431 13 14 5.8725 -7.6095 3.0307 14 1 5.5884 -7.0969 4.3952 15 1 5.7263 -9.0874 3.0174 16 1 7.2592 -7.2459 2.6435 17 6 0.6750 -4.9257 2.5019 18 8 -0.0775 -4.1791 3.0910 19 6 0.3173 -6.3803 2.3372 20 1 0.3532 -6.6624 1.2849 21 6 1.2727 -7.2664 3.1670 22 6 0.3668 -8.3989 3.6998 23 6 -1.0289 -8.0628 3.1295 24 1 -1.1993 -8.6045 2.1990 25 6 -2.1007 -8.3955 4.1353 26 8 -2.7367 -7.5098 4.6559 27 8 -2.3488 -9.6759 4.4529 28 8 -0.9944 -6.6400 2.8837 29 1 -0.3634 0.4511 0.9233 30 1 -0.3634 0.5740 -0.8524 31 1 -0.3633 -1.0252 -0.0710 32 1 3.0827 1.3433 -0.0709 33 1 1.5898 1.9164 -0.8523 34 1 1.7044 1.8722 0.9234 35 1 1.5611 -0.3875 2.0627 36 1 3.0797 -0.6612 1.1755 37 1 2.0659 -2.6214 0.0449 38 1 0.5472 -2.3476 0.9320 39 1 3.2636 -2.9357 2.1936 40 1 1.7446 -2.6617 3.0801 41 1 2.1644 -6.1466 0.8010 42 1 3.2902 -4.7955 0.5268 43 1 5.4095 -7.7926 0.2321 44 1 2.0615 -7.6739 2.5345 45 1 1.6997 -6.6981 3.9932 46 1 0.3459 -8.3905 4.7895 47 1 0.7076 -9.3662 3.3308 48 1 -3.0453 -9.8398 5.1033 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001598219521.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:25 Heat of formation + Delta-G solvation = -184.288626 kcal Electronic energy + Delta-G solvation = -29432.184693 eV Core-core repulsion = 25293.624125 eV Total energy + Delta-G solvation = -4138.560567 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.87681 -40.99853 -39.47345 -38.57531 -37.14103 -36.92626 -34.77178 -33.45531 -32.92593 -31.18544 -29.20436 -28.51298 -27.61463 -25.87652 -24.84449 -23.71271 -22.86428 -22.23392 -21.78801 -20.31242 -19.14405 -18.52977 -18.43577 -17.73696 -17.60324 -17.23823 -16.60906 -16.48687 -16.31107 -16.13692 -16.04127 -15.70855 -15.25782 -15.00692 -14.81519 -14.76074 -14.27026 -14.21683 -13.56247 -13.42501 -13.27279 -13.20833 -12.94832 -12.84242 -12.74965 -12.65385 -12.64975 -12.57517 -12.44293 -12.36769 -12.34798 -11.99998 -11.84066 -11.63712 -11.54194 -11.48653 -11.12427 -10.68693 -10.41785 -9.50144 -9.34352 -8.13082 -6.23766 1.05160 1.45050 1.48872 1.51532 1.58427 1.64958 2.16821 2.47370 2.95951 3.10329 3.18542 3.41931 3.75953 3.79630 3.91278 3.98723 4.03002 4.10504 4.15608 4.21432 4.38398 4.41660 4.44188 4.49422 4.58760 4.61230 4.65593 4.74099 4.78949 4.89429 4.93327 4.97690 5.00546 5.01996 5.11713 5.22864 5.25162 5.30136 5.48145 5.59345 5.74764 5.86622 6.02636 6.10341 6.11296 6.52838 6.85509 6.92795 7.25655 7.45959 8.92853 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.008018 B = 0.004392 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3491.434704 B = 6373.204861 C = 9391.860125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.563 5.563 3 C 0.025 3.975 4 C 0.065 3.935 5 C -0.114 4.114 6 C 0.122 3.878 7 N -0.589 5.589 8 C 0.247 3.753 9 C -0.530 4.530 10 H 0.054 0.946 11 C 0.034 3.966 12 N -0.915 5.915 13 Si 0.943 3.057 14 H -0.273 1.273 15 H -0.274 1.274 16 H -0.287 1.287 17 C 0.515 3.485 18 O -0.587 6.587 19 C 0.067 3.933 20 H 0.112 0.888 21 C -0.123 4.123 22 C -0.131 4.131 23 C 0.073 3.927 24 H 0.144 0.856 25 C 0.495 3.505 26 O -0.542 6.542 27 O -0.494 6.494 28 O -0.358 6.358 29 H 0.024 0.976 30 H 0.082 0.918 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.027 0.973 35 H 0.033 0.967 36 H 0.086 0.914 37 H 0.065 0.935 38 H 0.047 0.953 39 H 0.086 0.914 40 H 0.062 0.938 41 H 0.036 0.964 42 H 0.025 0.975 43 H 0.267 0.733 44 H 0.112 0.888 45 H 0.059 0.941 46 H 0.078 0.922 47 H 0.127 0.873 48 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.124 0.647 0.696 6.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.287 5.287 3 C -0.123 4.123 4 C -0.063 4.063 5 C -0.153 4.153 6 C -0.001 4.001 7 N -0.320 5.320 8 C 0.127 3.873 9 C -0.568 4.568 10 H 0.072 0.928 11 C -0.167 4.167 12 N -0.554 5.554 13 Si 0.769 3.231 14 H -0.198 1.198 15 H -0.199 1.199 16 H -0.213 1.213 17 C 0.303 3.697 18 O -0.468 6.468 19 C 0.007 3.993 20 H 0.130 0.870 21 C -0.161 4.161 22 C -0.168 4.168 23 C 0.015 3.985 24 H 0.161 0.839 25 C 0.337 3.663 26 O -0.431 6.431 27 O -0.309 6.309 28 O -0.277 6.277 29 H 0.043 0.957 30 H 0.101 0.899 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.046 0.954 35 H 0.051 0.949 36 H 0.104 0.896 37 H 0.083 0.917 38 H 0.066 0.934 39 H 0.104 0.896 40 H 0.081 0.919 41 H 0.054 0.946 42 H 0.043 0.957 43 H 0.077 0.923 44 H 0.130 0.870 45 H 0.078 0.922 46 H 0.097 0.903 47 H 0.145 0.855 48 H 0.296 0.704 Dipole moment (debyes) X Y Z Total from point charges -6.279 1.166 0.334 6.395 hybrid contribution 0.099 -0.045 1.639 1.642 sum -6.180 1.122 1.973 6.583 Atomic orbital electron populations 1.22424 0.87172 1.02040 1.00893 1.61965 1.08513 1.15018 1.43221 1.22433 1.01209 0.87600 1.01051 1.21972 1.00731 0.92309 0.91308 1.21761 1.00288 0.94809 0.98464 1.21325 1.00657 0.79992 0.98155 1.48126 1.19204 1.10251 1.54374 1.19278 0.87986 0.88348 0.91689 1.21535 1.15150 1.25637 0.94510 0.92794 1.25403 0.98309 0.96767 0.96207 1.70000 1.35624 1.34963 1.14809 0.85738 0.79063 0.78695 0.79581 1.19807 1.19943 1.21310 1.20416 0.81292 0.89658 0.78339 1.90614 1.51694 1.59976 1.44534 1.22895 0.83232 0.93023 1.00154 0.87046 1.22925 0.97902 0.95321 0.99946 1.22965 0.90613 1.01266 1.01984 1.22718 0.93513 0.84125 0.98169 0.83894 1.22973 0.82071 0.80630 0.80609 1.90755 1.49793 1.50001 1.52572 1.84436 1.58578 1.26475 1.61366 1.89282 1.32067 1.22129 1.84248 0.95703 0.89888 0.92471 0.90709 0.90192 0.95390 0.94851 0.89557 0.91664 0.93435 0.89607 0.91927 0.94591 0.95654 0.92349 0.86991 0.92168 0.90333 0.85514 0.70395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.55 9.32 127.69 1.19 1.74 16 2 N -0.56 -14.31 5.02 -948.89 -4.76 -19.07 16 3 C 0.02 0.48 9.57 127.69 1.22 1.70 16 4 C 0.07 1.77 4.96 86.30 0.43 2.20 16 5 C -0.11 -3.73 5.46 30.60 0.17 -3.56 16 6 C 0.12 4.46 5.41 86.38 0.47 4.92 16 7 N -0.59 -24.19 2.46 -826.16 -2.03 -26.22 16 8 C 0.25 10.78 4.71 85.63 0.40 11.18 16 9 C -0.53 -24.48 6.38 25.60 0.16 -24.32 16 10 H 0.05 2.59 7.52 -2.91 -0.02 2.56 16 11 C 0.03 1.61 5.44 84.65 0.46 2.07 16 12 N -0.91 -45.70 13.29 21.45 0.28 -45.41 16 13 Si 0.94 38.25 29.54 68.60 2.03 40.27 16 14 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 15 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 16 H -0.29 -11.82 7.11 99.48 0.71 -11.11 16 17 C 0.51 22.37 6.97 87.66 0.61 22.98 16 18 O -0.59 -29.24 16.13 15.35 0.25 -28.99 16 19 C 0.07 2.51 2.78 30.35 0.08 2.59 16 20 H 0.11 3.79 7.12 -2.39 -0.02 3.78 16 21 C -0.12 -4.21 4.70 31.61 0.15 -4.06 16 22 C -0.13 -3.40 6.62 31.61 0.21 -3.19 16 23 C 0.07 2.03 3.82 30.35 0.12 2.15 16 24 H 0.14 2.96 8.14 -2.38 -0.02 2.94 16 25 C 0.49 13.61 7.57 71.24 0.54 14.14 16 26 O -0.54 -20.06 17.31 28.21 0.49 -19.57 16 27 O -0.49 -8.64 13.42 -51.44 -0.69 -9.34 16 28 O -0.36 -13.83 10.17 -121.26 -1.23 -15.06 16 29 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.08 1.64 8.12 -2.39 -0.02 1.62 16 31 H 0.06 1.54 6.47 -2.39 -0.02 1.53 16 32 H 0.07 1.35 8.12 -2.39 -0.02 1.33 16 33 H 0.08 1.32 8.12 -2.39 -0.02 1.30 16 34 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.03 0.91 8.12 -2.39 -0.02 0.89 16 36 H 0.09 2.15 8.06 -2.39 -0.02 2.13 16 37 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.05 1.70 6.55 -2.39 -0.02 1.68 16 39 H 0.09 3.01 8.07 -2.39 -0.02 2.99 16 40 H 0.06 2.38 7.42 -2.39 -0.02 2.36 16 41 H 0.04 1.59 6.08 -2.39 -0.01 1.57 16 42 H 0.03 1.19 8.07 -2.39 -0.02 1.17 16 43 H 0.27 12.77 8.31 -92.70 -0.77 12.00 16 44 H 0.11 4.05 6.35 -2.38 -0.02 4.03 16 45 H 0.06 2.31 7.47 -2.39 -0.02 2.29 16 46 H 0.08 2.01 7.86 -2.39 -0.02 1.99 16 47 H 0.13 2.48 8.14 -2.39 -0.02 2.46 16 48 H 0.43 3.66 9.10 -74.06 -0.67 2.98 16 Total: -1.00 -68.35 390.03 0.83 -67.52 By element: Atomic # 1 Polarization: 25.03 SS G_CDS: 0.29 Total: 25.32 kcal Atomic # 6 Polarization: 24.34 SS G_CDS: 6.21 Total: 30.55 kcal Atomic # 7 Polarization: -84.19 SS G_CDS: -6.51 Total: -90.70 kcal Atomic # 8 Polarization: -71.77 SS G_CDS: -1.19 Total: -72.96 kcal Atomic # 14 Polarization: 38.25 SS G_CDS: 2.03 Total: 40.27 kcal Total: -68.35 0.83 -67.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598219521.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.772 kcal (2) G-P(sol) polarization free energy of solvation -68.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds