Wall clock time and date at job start Tue Mar 31 2020 16:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42903 * 113.99669 * 2 1 4 4 H 1.08992 * 109.47309 * 30.00550 * 3 2 1 5 5 C 1.52996 * 109.47126 * 269.99905 * 3 2 1 6 6 C 1.53000 * 109.47328 * 180.02562 * 5 3 2 7 7 C 1.52997 * 109.47060 * 60.00126 * 6 5 3 8 8 C 1.53006 * 109.47127 * 300.00449 * 7 6 5 9 9 H 1.09001 * 109.47002 * 299.99574 * 8 7 6 10 10 C 1.52997 * 109.47127 * 179.97438 * 8 7 6 11 11 H 1.09001 * 109.47289 * 299.99953 * 10 8 7 12 12 N 1.46899 * 109.47254 * 59.99866 * 10 8 7 13 13 C 1.46903 * 110.99807 * 205.00073 * 12 10 8 14 14 C 1.50705 * 109.46848 * 179.97438 * 13 12 10 15 15 O 1.21274 * 120.00430 * 0.02562 * 14 13 12 16 16 N 1.34778 * 119.99728 * 180.02562 * 14 13 12 17 17 C 1.46504 * 119.99923 * 180.02562 * 16 14 13 18 18 C 1.50699 * 109.47228 * 179.97438 * 17 16 14 19 19 H 1.08003 * 119.99701 * 359.97438 * 18 17 16 20 20 C 1.37872 * 120.00173 * 179.97438 * 18 17 16 21 21 N 1.31513 * 120.00323 * 179.97438 * 20 18 17 22 22 Si 1.86807 * 119.99797 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.47306 * 89.99966 * 22 20 18 24 24 H 1.48505 * 109.46779 * 209.99635 * 22 20 18 25 25 H 1.48498 * 109.46757 * 329.99418 * 22 20 18 26 26 C 1.50696 * 109.47242 * 179.97438 * 10 8 7 27 27 O 1.20825 * 119.99818 * 240.00054 * 26 10 8 28 28 O 1.34223 * 120.00379 * 59.99555 * 26 10 8 29 29 C 1.52997 * 109.47164 * 59.99836 * 8 7 6 30 30 H 1.08996 * 109.46980 * 299.99764 * 1 2 3 31 31 H 1.08992 * 109.47145 * 60.00079 * 1 2 3 32 32 H 1.09005 * 109.46880 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47368 * 60.00346 * 5 3 2 34 34 H 1.09001 * 109.47372 * 300.00501 * 5 3 2 35 35 H 1.09002 * 109.47398 * 180.02562 * 6 5 3 36 36 H 1.09001 * 109.47194 * 300.00476 * 6 5 3 37 37 H 1.08998 * 109.47533 * 59.99948 * 7 6 5 38 38 H 1.08996 * 109.47853 * 180.02562 * 7 6 5 39 39 H 1.00896 * 110.99699 * 328.94889 * 12 10 8 40 40 H 1.09000 * 109.47514 * 299.99609 * 13 12 10 41 41 H 1.08999 * 109.47620 * 60.00050 * 13 12 10 42 42 H 0.97001 * 120.00384 * 359.97438 * 16 14 13 43 43 H 1.08998 * 109.47249 * 299.99884 * 17 16 14 44 44 H 1.09001 * 109.47154 * 59.99871 * 17 16 14 45 45 H 0.97006 * 120.00118 * 180.02562 * 21 20 18 46 46 H 0.96702 * 117.00358 * 180.02562 * 28 26 10 47 47 H 1.09002 * 109.47045 * 180.02562 * 29 8 7 48 48 H 1.09001 * 109.47375 * 59.99966 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9993 0.5139 5 6 2.2176 1.7714 -1.4425 6 6 2.8404 3.1689 -1.4425 7 6 4.1892 3.1262 -0.7215 8 6 3.9818 2.6602 0.7211 9 1 3.3169 3.3543 1.2351 10 6 5.3306 2.6168 1.4419 11 1 5.9952 1.9225 0.9278 12 7 5.9292 3.9584 1.4419 13 6 7.3914 3.8824 1.5610 14 6 7.9687 5.2745 1.5569 15 8 7.2344 6.2352 1.4645 16 7 9.3011 5.4517 1.6561 17 6 9.8623 6.8050 1.6527 18 6 11.3623 6.7271 1.7747 19 1 11.8489 5.7657 1.8479 20 6 12.1135 7.8831 1.7929 21 7 13.4225 7.8151 1.8999 22 14 11.2717 9.5460 1.6669 23 1 10.9383 10.0364 3.0283 24 1 12.1821 10.5125 1.0018 25 1 10.0257 9.4109 0.8704 26 6 5.1263 2.1585 2.8628 27 8 5.4467 2.8757 3.7809 28 8 4.5884 0.9535 3.1086 29 6 3.3590 1.2627 0.7210 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.2568 1.8015 -1.9563 34 1 2.8829 1.0775 -1.9564 35 1 2.9878 3.5010 -2.4702 36 1 2.1755 3.8631 -0.9285 37 1 4.8541 2.4321 -1.2354 38 1 4.6328 4.1218 -0.7211 39 1 5.6599 4.4744 0.6178 40 1 7.6546 3.3823 2.4931 41 1 7.7958 3.3193 0.7199 42 1 9.8884 4.6833 1.7304 43 1 9.5987 7.3053 0.7209 44 1 9.4584 7.3679 2.4941 45 1 13.9509 8.6285 1.9130 46 1 4.4766 0.7036 4.0361 47 1 3.2109 0.9309 1.7487 48 1 4.0239 0.5686 0.2070 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599110765.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:00:22 Heat of formation + Delta-G solvation = -180.930027 kcal Electronic energy + Delta-G solvation = -28642.840807 eV Core-core repulsion = 24504.425879 eV Total energy + Delta-G solvation = -4138.414927 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.90054 -39.44140 -38.97393 -37.42072 -36.33956 -35.18969 -34.22950 -32.37297 -31.89328 -30.45867 -28.63407 -27.38848 -26.79024 -25.25851 -23.07908 -22.37072 -21.86651 -20.87061 -20.38126 -19.84041 -18.28367 -17.54140 -16.97964 -16.89467 -16.31913 -16.00259 -15.78759 -15.52720 -15.33924 -15.20433 -14.86144 -14.47598 -14.32707 -14.15733 -13.73738 -13.69838 -13.47187 -13.02473 -12.83523 -12.64690 -12.52415 -12.34803 -12.19045 -12.07882 -11.79310 -11.66239 -11.42444 -11.31960 -11.01553 -10.94133 -10.80825 -10.76846 -10.75109 -10.50604 -9.96563 -9.79588 -9.49094 -9.22993 -8.77348 -8.64695 -8.13346 -6.20852 -4.23088 2.11212 2.71281 3.21846 3.26141 3.28624 3.34496 3.42801 3.66053 4.13042 4.27097 4.33558 4.34811 4.52910 4.58637 4.71142 4.83043 4.86282 4.91568 4.97204 5.01129 5.07211 5.13473 5.14490 5.19830 5.25220 5.27044 5.31753 5.34305 5.53649 5.59609 5.62363 5.69772 5.78026 5.78857 6.00102 6.07148 6.37162 6.54466 6.83538 6.84815 7.08325 7.13568 7.23403 7.40095 7.83923 8.14185 8.52004 8.75760 8.94106 9.39323 10.91032 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.023169 B = 0.002275 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.210121 B =12305.435668 C =13021.120889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.091 3.909 4 H 0.060 0.940 5 C -0.142 4.142 6 C -0.114 4.114 7 C -0.123 4.123 8 C -0.081 4.081 9 H 0.088 0.912 10 C 0.106 3.894 11 H 0.086 0.914 12 N -0.653 5.653 13 C 0.039 3.961 14 C 0.503 3.497 15 O -0.544 6.544 16 N -0.706 5.706 17 C 0.222 3.778 18 C -0.544 4.544 19 H 0.079 0.921 20 C 0.077 3.923 21 N -0.893 5.893 22 Si 0.878 3.122 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.261 1.261 26 C 0.474 3.526 27 O -0.485 6.485 28 O -0.516 6.516 29 C -0.119 4.119 30 H 0.041 0.959 31 H 0.039 0.961 32 H 0.084 0.916 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.365 0.635 40 H 0.100 0.900 41 H 0.060 0.940 42 H 0.396 0.604 43 H 0.025 0.975 44 H 0.021 0.979 45 H 0.267 0.733 46 H 0.405 0.595 47 H 0.097 0.903 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.194 -18.249 -5.633 31.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C 0.033 3.967 4 H 0.078 0.922 5 C -0.180 4.180 6 C -0.152 4.152 7 C -0.160 4.160 8 C -0.100 4.100 9 H 0.106 0.894 10 C -0.006 4.006 11 H 0.103 0.897 12 N -0.291 5.291 13 C -0.093 4.093 14 C 0.287 3.713 15 O -0.422 6.422 16 N -0.356 5.356 17 C 0.099 3.901 18 C -0.581 4.581 19 H 0.097 0.903 20 C -0.127 4.127 21 N -0.530 5.530 22 Si 0.704 3.296 23 H -0.198 1.198 24 H -0.209 1.209 25 H -0.185 1.185 26 C 0.313 3.687 27 O -0.369 6.369 28 O -0.328 6.328 29 C -0.157 4.157 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.103 0.897 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.190 0.810 40 H 0.119 0.881 41 H 0.078 0.922 42 H 0.229 0.771 43 H 0.043 0.957 44 H 0.039 0.961 45 H 0.077 0.923 46 H 0.264 0.736 47 H 0.115 0.885 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -25.359 -17.137 -5.182 31.042 hybrid contribution 0.079 0.296 -0.168 0.349 sum -25.280 -16.841 -5.350 30.844 Atomic orbital electron populations 1.22775 0.81297 1.02633 0.99878 1.87915 1.19416 1.27917 1.95059 1.22126 0.94924 0.84285 0.95334 0.92236 1.22066 1.01379 0.97311 0.97217 1.21440 0.96264 0.96478 1.00988 1.21724 0.98208 1.02021 0.94082 1.21179 0.94359 0.98267 0.96173 0.89368 1.21025 0.97979 0.92315 0.89250 0.89662 1.59548 1.08007 1.12986 1.48547 1.21937 0.87958 0.96423 1.02998 1.20233 0.83053 0.90400 0.77635 1.90655 1.59268 1.42150 1.50163 1.46148 1.05818 1.11325 1.72283 1.19484 0.94300 0.79459 0.96820 1.21096 0.88750 0.95492 1.52809 0.90255 1.24801 0.94721 0.99269 0.93881 1.69882 1.04807 1.29055 1.49238 0.86804 0.80009 0.83564 0.79229 1.19820 1.20929 1.18519 1.23458 0.73882 0.78609 0.92713 1.90767 1.45498 1.54278 1.46339 1.84613 1.75777 1.36526 1.35922 1.21834 0.95056 0.95764 1.03047 0.94076 0.94190 0.89731 0.91946 0.90948 0.91116 0.91580 0.91119 0.90834 0.80993 0.88146 0.92178 0.77061 0.95722 0.96109 0.92271 0.73626 0.88517 0.90674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.82 101.05 1.09 1.27 16 2 O -0.38 -3.29 10.35 -35.23 -0.36 -3.66 16 3 C 0.09 0.67 2.61 -26.73 -0.07 0.60 16 4 H 0.06 0.42 7.79 -51.93 -0.40 0.01 16 5 C -0.14 -0.93 5.54 -26.73 -0.15 -1.08 16 6 C -0.11 -0.73 5.92 -26.73 -0.16 -0.88 16 7 C -0.12 -0.87 4.97 -26.73 -0.13 -1.00 16 8 C -0.08 -0.64 1.90 -90.62 -0.17 -0.81 16 9 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 10 C 0.11 1.03 2.17 -68.87 -0.15 0.88 16 11 H 0.09 0.69 7.80 -51.93 -0.40 0.28 16 12 N -0.65 -8.47 5.46 -109.22 -0.60 -9.07 16 13 C 0.04 0.54 5.86 -4.97 -0.03 0.51 16 14 C 0.50 9.61 7.87 -10.98 -0.09 9.53 16 15 O -0.54 -12.44 16.20 5.56 0.09 -12.35 16 16 N -0.71 -14.39 5.55 -61.47 -0.34 -14.73 16 17 C 0.22 5.51 4.50 -5.19 -0.02 5.49 16 18 C -0.54 -15.02 9.83 -34.44 -0.34 -15.36 16 19 H 0.08 2.27 7.84 -52.48 -0.41 1.86 16 20 C 0.08 2.19 5.47 -17.82 -0.10 2.10 16 21 N -0.89 -26.63 13.96 55.43 0.77 -25.86 16 22 Si 0.88 21.65 27.47 -169.99 -4.67 16.98 16 23 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.26 -6.38 6.54 56.52 0.37 -6.01 16 26 C 0.47 5.26 7.44 36.00 0.27 5.53 16 27 O -0.48 -7.51 16.68 -18.75 -0.31 -7.82 16 28 O -0.52 -3.95 10.34 -39.24 -0.41 -4.35 16 29 C -0.12 -0.90 4.33 -26.73 -0.12 -1.02 16 30 H 0.04 0.21 8.08 -51.93 -0.42 -0.21 16 31 H 0.04 0.20 7.87 -51.93 -0.41 -0.21 16 32 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.38 7.87 -51.93 -0.41 -0.03 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.57 6.21 -51.93 -0.32 0.25 16 39 H 0.36 4.53 5.86 -39.29 -0.23 4.30 16 40 H 0.10 1.38 7.62 -51.93 -0.40 0.99 16 41 H 0.06 0.65 8.06 -51.93 -0.42 0.23 16 42 H 0.40 7.05 8.32 -40.82 -0.34 6.71 16 43 H 0.02 0.64 7.20 -51.93 -0.37 0.27 16 44 H 0.02 0.55 7.57 -51.93 -0.39 0.16 16 45 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 46 H 0.40 1.67 9.10 45.56 0.41 2.09 16 47 H 0.10 0.78 5.32 -51.93 -0.28 0.51 16 48 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 383.81 15.07 5.78 5.78 Total: -1.00 -35.98 383.81 -7.12 -43.10 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -6.92 Total: 6.22 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: -0.16 Total: 5.75 kcal Atomic # 7 Polarization: -49.49 SS G_CDS: -0.16 Total: -49.65 kcal Atomic # 8 Polarization: -27.18 SS G_CDS: -0.99 Total: -28.18 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.67 Total: 16.98 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.98 -7.12 -43.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599110765.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.832 kcal (2) G-P(sol) polarization free energy of solvation -35.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds