Wall clock time and date at job start Tue Mar 31 2020 16:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42904 * 113.99835 * 2 1 4 4 H 1.09000 * 109.47306 * 29.99072 * 3 2 1 5 5 C 1.53005 * 109.46753 * 269.99602 * 3 2 1 6 6 C 1.53004 * 109.47027 * 300.00142 * 5 3 2 7 7 C 1.53003 * 109.47113 * 299.99780 * 6 5 3 8 8 C 1.52997 * 109.46787 * 60.00263 * 7 6 5 9 9 H 1.08994 * 109.47289 * 60.00227 * 8 7 6 10 10 C 1.53003 * 109.46787 * 180.02562 * 8 7 6 11 11 H 1.08997 * 109.47069 * 179.97438 * 10 8 7 12 12 N 1.46901 * 109.47085 * 299.99931 * 10 8 7 13 13 C 1.46902 * 110.99931 * 205.00079 * 12 10 8 14 14 C 1.50699 * 109.46840 * 179.97438 * 13 12 10 15 15 O 1.21280 * 120.00276 * 0.02562 * 14 13 12 16 16 N 1.34782 * 119.99692 * 180.02562 * 14 13 12 17 17 C 1.46497 * 120.00016 * 180.02562 * 16 14 13 18 18 C 1.50694 * 109.47115 * 179.97438 * 17 16 14 19 19 H 1.08000 * 120.00563 * 359.97438 * 18 17 16 20 20 C 1.37885 * 119.99902 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99913 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99766 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47353 * 269.99586 * 22 20 18 24 24 H 1.48501 * 109.47293 * 30.00037 * 22 20 18 25 25 H 1.48504 * 109.46680 * 149.99835 * 22 20 18 26 26 C 1.50701 * 109.47192 * 60.00143 * 10 8 7 27 27 O 1.20822 * 119.99789 * 239.99859 * 26 10 8 28 28 O 1.34222 * 120.00068 * 60.00119 * 26 10 8 29 29 C 1.52995 * 109.47432 * 150.00064 * 3 2 1 30 30 H 1.08998 * 109.46745 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46792 * 300.00501 * 1 2 3 32 32 H 1.08996 * 109.46661 * 60.00660 * 1 2 3 33 33 H 1.09001 * 109.47407 * 60.00026 * 5 3 2 34 34 H 1.09003 * 109.47257 * 179.97438 * 5 3 2 35 35 H 1.08991 * 109.47009 * 60.00477 * 6 5 3 36 36 H 1.09001 * 109.46526 * 180.02562 * 6 5 3 37 37 H 1.09003 * 109.47074 * 300.00142 * 7 6 5 38 38 H 1.08992 * 109.46987 * 180.02562 * 7 6 5 39 39 H 1.00897 * 110.99668 * 81.05117 * 12 10 8 40 40 H 1.09002 * 109.46978 * 60.00184 * 13 12 10 41 41 H 1.09000 * 109.46932 * 300.00122 * 13 12 10 42 42 H 0.97001 * 119.99765 * 359.97438 * 16 14 13 43 43 H 1.09007 * 109.47078 * 59.99547 * 17 16 14 44 44 H 1.09003 * 109.46733 * 300.00270 * 17 16 14 45 45 H 0.97001 * 119.99646 * 179.97438 * 21 20 18 46 46 H 0.96703 * 117.00039 * 180.02562 * 28 26 10 47 47 H 1.09009 * 109.47104 * 300.00025 * 29 3 2 48 48 H 1.09004 * 109.47552 * 179.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9995 0.5137 5 6 2.2177 1.7713 -1.4426 6 6 3.1516 0.7972 -2.1637 7 6 4.5003 0.7551 -1.4424 8 6 4.2927 0.2893 0.0001 9 1 3.8495 -0.7064 0.0001 10 6 5.6414 0.2478 0.7215 11 1 5.4935 -0.0836 1.7493 12 7 6.5385 -0.6871 0.0293 13 6 7.5613 -1.2105 0.9447 14 6 8.4603 -2.1642 0.2008 15 8 8.2682 -2.3856 -0.9761 16 7 9.4778 -2.7711 0.8434 17 6 10.3521 -3.6978 0.1202 18 6 11.4012 -4.2348 1.0592 19 1 11.4157 -3.9174 2.0914 20 6 12.3435 -5.1308 0.6004 21 7 12.3263 -5.5171 -0.6567 22 14 13.6444 -5.7960 1.7642 23 1 14.8353 -4.9094 1.7344 24 1 13.0968 -5.8433 3.1438 25 1 14.0353 -7.1643 1.3396 26 6 6.2537 1.6248 0.7215 27 8 7.3272 1.8085 0.1985 28 8 5.6065 2.6472 1.3025 29 6 3.3589 1.2634 0.7212 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3632 0.5137 -0.8900 33 1 1.2569 1.8013 -1.9565 34 1 2.6606 2.7673 -1.4427 35 1 2.7082 -0.1985 -2.1637 36 1 3.2997 1.1294 -3.1913 37 1 4.9436 1.7509 -1.4425 38 1 5.1656 0.0615 -1.9564 39 1 6.9627 -0.2518 -0.7760 40 1 7.0773 -1.7356 1.7682 41 1 8.1535 -0.3845 1.3383 42 1 9.6316 -2.5937 1.7846 43 1 10.8364 -3.1726 -0.7032 44 1 9.7596 -4.5235 -0.2739 45 1 12.9894 -6.1471 -0.9796 46 1 6.0387 3.5118 1.2768 47 1 3.2111 0.9315 1.7490 48 1 3.8025 2.2591 0.7208 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599110767.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:00:28 Heat of formation + Delta-G solvation = -188.179622 kcal Electronic energy + Delta-G solvation = -28875.195186 eV Core-core repulsion = 24736.465893 eV Total energy + Delta-G solvation = -4138.729293 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.11374 -39.40147 -38.77844 -36.96095 -36.47514 -34.95634 -34.07694 -32.30967 -31.71592 -30.44343 -28.22583 -26.99148 -26.63568 -24.97723 -22.99536 -22.79190 -22.19602 -20.87045 -19.73663 -19.67682 -18.30341 -17.69050 -16.98084 -16.45343 -16.17133 -15.94591 -15.65300 -15.47552 -15.34754 -14.93102 -14.86793 -14.40645 -14.18400 -13.86117 -13.70791 -13.44710 -13.14972 -12.85596 -12.78046 -12.49323 -12.24385 -12.10348 -12.00991 -11.88957 -11.83019 -11.55024 -11.49440 -11.14171 -10.95772 -10.89682 -10.85533 -10.75907 -10.42924 -10.29549 -10.26453 -9.71376 -9.36889 -9.05766 -8.71093 -8.65209 -7.83304 -6.13839 -4.20606 1.95796 2.78473 3.26075 3.31891 3.34410 3.42078 3.53947 3.65385 4.27462 4.37240 4.44253 4.49751 4.62872 4.76588 4.86277 4.99355 5.01971 5.05780 5.09222 5.10181 5.22095 5.28275 5.34068 5.36869 5.39022 5.39852 5.49877 5.57930 5.61069 5.65103 5.79969 5.92370 6.05098 6.09975 6.18958 6.22681 6.37380 6.65419 6.96214 7.20082 7.35502 7.48111 7.56184 7.63761 7.70070 8.00297 8.66441 8.81549 9.14640 9.45855 10.96395 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.021380 B = 0.002242 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.294268 B =12485.351016 C =12950.081537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.377 6.377 3 C 0.091 3.909 4 H 0.058 0.942 5 C -0.141 4.141 6 C -0.111 4.111 7 C -0.119 4.119 8 C -0.063 4.063 9 H 0.106 0.894 10 C 0.099 3.901 11 H 0.117 0.883 12 N -0.636 5.636 13 C 0.032 3.968 14 C 0.501 3.499 15 O -0.542 6.542 16 N -0.714 5.714 17 C 0.251 3.749 18 C -0.543 4.543 19 H 0.063 0.937 20 C 0.063 3.937 21 N -0.885 5.885 22 Si 0.904 3.096 23 H -0.279 1.279 24 H -0.273 1.273 25 H -0.284 1.284 26 C 0.449 3.551 27 O -0.513 6.513 28 O -0.512 6.512 29 C -0.122 4.122 30 H 0.084 0.916 31 H 0.038 0.962 32 H 0.038 0.962 33 H 0.060 0.940 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.059 0.941 37 H 0.050 0.950 38 H 0.078 0.922 39 H 0.365 0.635 40 H 0.100 0.900 41 H 0.059 0.941 42 H 0.390 0.610 43 H 0.026 0.974 44 H 0.028 0.972 45 H 0.266 0.734 46 H 0.400 0.600 47 H 0.071 0.929 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.904 18.455 4.835 30.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.296 6.296 3 C 0.033 3.967 4 H 0.077 0.923 5 C -0.179 4.179 6 C -0.148 4.148 7 C -0.157 4.157 8 C -0.082 4.082 9 H 0.124 0.876 10 C -0.014 4.014 11 H 0.135 0.865 12 N -0.270 5.270 13 C -0.101 4.101 14 C 0.284 3.716 15 O -0.420 6.420 16 N -0.363 5.363 17 C 0.130 3.870 18 C -0.581 4.581 19 H 0.081 0.919 20 C -0.141 4.141 21 N -0.523 5.523 22 Si 0.731 3.269 23 H -0.205 1.205 24 H -0.198 1.198 25 H -0.210 1.210 26 C 0.289 3.711 27 O -0.400 6.400 28 O -0.323 6.323 29 C -0.159 4.159 30 H 0.103 0.897 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.097 0.903 39 H 0.188 0.812 40 H 0.118 0.882 41 H 0.077 0.923 42 H 0.222 0.778 43 H 0.044 0.956 44 H 0.046 0.954 45 H 0.075 0.925 46 H 0.259 0.741 47 H 0.089 0.911 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -24.092 17.096 3.760 29.780 hybrid contribution 1.588 1.331 1.121 2.356 sum -22.504 18.428 4.881 29.493 Atomic orbital electron populations 1.22762 0.81662 1.02648 0.99557 1.87975 1.19019 1.27630 1.94968 1.22113 0.94643 0.84619 0.95275 0.92349 1.22040 1.00056 0.99533 0.96280 1.21371 0.94902 1.00314 0.98217 1.21634 0.97819 1.00861 0.95363 1.21032 0.90996 1.01924 0.94206 0.87619 1.21776 0.94804 0.83298 1.01503 0.86497 1.60594 1.21967 1.35390 1.09017 1.22009 0.93722 0.98160 0.96188 1.20173 0.81634 0.81919 0.87844 1.90669 1.71589 1.63764 1.15953 1.46421 1.30337 1.45679 1.13858 1.19095 0.87924 0.87515 0.92454 1.21229 1.13370 1.27004 0.96506 0.91922 1.24962 0.97751 0.96025 0.95350 1.69980 1.35422 1.32506 1.14347 0.86411 0.81450 0.78278 0.80728 1.20502 1.19763 1.21004 1.25249 0.83432 0.88594 0.73819 1.90768 1.22180 1.84570 1.42499 1.84672 1.52841 1.21422 1.73372 1.21991 0.93421 1.01475 0.99045 0.89749 0.94328 0.94352 0.92125 0.91323 0.90834 0.92226 0.93115 0.90330 0.81218 0.88196 0.92251 0.77803 0.95598 0.95450 0.92462 0.74064 0.91068 0.88508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.82 101.05 1.09 1.29 16 2 O -0.38 -3.39 9.00 -35.23 -0.32 -3.70 16 3 C 0.09 0.69 2.92 -26.73 -0.08 0.61 16 4 H 0.06 0.36 7.79 -51.93 -0.40 -0.04 16 5 C -0.14 -1.04 5.63 -26.73 -0.15 -1.20 16 6 C -0.11 -0.99 5.78 -26.73 -0.15 -1.15 16 7 C -0.12 -1.21 4.69 -26.73 -0.13 -1.33 16 8 C -0.06 -0.60 2.06 -90.62 -0.19 -0.79 16 9 H 0.11 1.17 7.68 -51.93 -0.40 0.77 16 10 C 0.10 1.04 2.37 -68.86 -0.16 0.87 16 11 H 0.12 1.02 7.80 -51.93 -0.41 0.62 16 12 N -0.64 -8.93 5.24 -109.22 -0.57 -9.50 16 13 C 0.03 0.47 5.86 -4.98 -0.03 0.44 16 14 C 0.50 10.25 7.87 -10.98 -0.09 10.17 16 15 O -0.54 -13.37 16.20 5.56 0.09 -13.28 16 16 N -0.71 -15.35 5.55 -61.47 -0.34 -15.69 16 17 C 0.25 6.79 5.43 -5.20 -0.03 6.76 16 18 C -0.54 -14.95 9.28 -34.44 -0.32 -15.27 16 19 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 20 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 21 N -0.89 -26.45 13.29 55.43 0.74 -25.71 16 22 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 26 C 0.45 4.76 6.13 36.01 0.22 4.98 16 27 O -0.51 -7.36 16.06 -18.75 -0.30 -7.67 16 28 O -0.51 -3.63 10.34 -39.24 -0.41 -4.04 16 29 C -0.12 -0.94 4.42 -26.73 -0.12 -1.05 16 30 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.04 0.20 8.08 -51.93 -0.42 -0.22 16 32 H 0.04 0.21 7.87 -51.93 -0.41 -0.20 16 33 H 0.06 0.41 7.87 -51.93 -0.41 0.00 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.74 7.68 -51.93 -0.40 0.34 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.05 0.51 7.22 -51.93 -0.37 0.14 16 38 H 0.08 0.95 7.21 -51.93 -0.37 0.58 16 39 H 0.36 5.83 6.70 -39.29 -0.26 5.56 16 40 H 0.10 1.21 8.06 -51.93 -0.42 0.79 16 41 H 0.06 0.83 7.62 -51.93 -0.40 0.43 16 42 H 0.39 7.13 8.32 -40.82 -0.34 6.79 16 43 H 0.03 0.78 8.14 -51.92 -0.42 0.35 16 44 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 46 H 0.40 1.47 9.10 45.56 0.41 1.88 16 47 H 0.07 0.53 8.14 -51.92 -0.42 0.10 16 48 H 0.10 0.69 5.32 -51.93 -0.28 0.42 16 LS Contribution 384.33 15.07 5.79 5.79 Total: -1.00 -35.02 384.33 -7.51 -42.52 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -6.94 Total: 9.21 kcal Atomic # 6 Polarization: 6.22 SS G_CDS: -0.22 Total: 5.99 kcal Atomic # 7 Polarization: -50.73 SS G_CDS: -0.18 Total: -50.91 kcal Atomic # 8 Polarization: -27.75 SS G_CDS: -0.93 Total: -28.69 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.02 -7.51 -42.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599110767.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.659 kcal (2) G-P(sol) polarization free energy of solvation -35.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds