Wall clock time and date at job start Tue Mar 31 2020 16:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.42905 * 113.99966 * 2 1 4 4 H 1.08996 * 109.46641 * 30.00814 * 3 2 1 5 5 C 1.52997 * 109.47264 * 270.00126 * 3 2 1 6 6 C 1.53000 * 109.47060 * 300.00236 * 5 3 2 7 7 C 1.53002 * 109.47233 * 299.99657 * 6 5 3 8 8 C 1.52997 * 109.46817 * 60.00194 * 7 6 5 9 9 H 1.09002 * 109.47153 * 60.00231 * 8 7 6 10 10 C 1.53002 * 109.47143 * 180.02562 * 8 7 6 11 11 H 1.09002 * 109.47067 * 59.99982 * 10 8 7 12 12 N 1.46899 * 109.47071 * 300.00144 * 10 8 7 13 13 C 1.46894 * 111.00220 * 154.99912 * 12 10 8 14 14 C 1.50694 * 109.47381 * 179.97438 * 13 12 10 15 15 O 1.21284 * 120.00225 * 0.02562 * 14 13 12 16 16 N 1.34776 * 120.00497 * 180.02562 * 14 13 12 17 17 C 1.46500 * 120.00565 * 180.02562 * 16 14 13 18 18 C 1.50697 * 109.47523 * 179.97438 * 17 16 14 19 19 H 1.08007 * 119.99614 * 359.97438 * 18 17 16 20 20 C 1.37872 * 120.00237 * 180.02562 * 18 17 16 21 21 N 1.31511 * 120.00021 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00069 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47242 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47245 * 119.99812 * 22 20 18 25 25 H 1.48503 * 109.47128 * 239.99650 * 22 20 18 26 26 C 1.50703 * 109.47292 * 180.02562 * 10 8 7 27 27 O 1.20824 * 120.00141 * 119.99761 * 26 10 8 28 28 O 1.34226 * 119.99900 * 300.00194 * 26 10 8 29 29 C 1.52999 * 109.46728 * 150.00041 * 3 2 1 30 30 H 1.08994 * 109.47765 * 59.99757 * 1 2 3 31 31 H 1.09000 * 109.47532 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47426 * 299.99475 * 1 2 3 33 33 H 1.09002 * 109.47153 * 179.97438 * 5 3 2 34 34 H 1.09001 * 109.46832 * 60.00108 * 5 3 2 35 35 H 1.08992 * 109.47399 * 59.99823 * 6 5 3 36 36 H 1.09004 * 109.46724 * 180.02562 * 6 5 3 37 37 H 1.08993 * 109.47662 * 180.02562 * 7 6 5 38 38 H 1.09002 * 109.47075 * 300.00932 * 7 6 5 39 39 H 1.00904 * 110.99838 * 31.04440 * 12 10 8 40 40 H 1.08998 * 109.47346 * 299.99916 * 13 12 10 41 41 H 1.09007 * 109.47035 * 60.00148 * 13 12 10 42 42 H 0.97005 * 119.99767 * 359.97438 * 16 14 13 43 43 H 1.08998 * 109.46677 * 299.99985 * 17 16 14 44 44 H 1.08999 * 109.46671 * 59.99627 * 17 16 14 45 45 H 0.97005 * 120.00338 * 180.02562 * 21 20 18 46 46 H 0.96700 * 117.00486 * 180.02562 * 28 26 10 47 47 H 1.09000 * 109.47486 * 300.00062 * 29 3 2 48 48 H 1.09002 * 109.46716 * 180.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3449 1.9993 0.5140 5 6 2.2176 1.7715 -1.4425 6 6 3.1513 0.7974 -2.1638 7 6 4.5001 0.7552 -1.4426 8 6 4.2926 0.2892 -0.0001 9 1 3.8493 -0.7065 -0.0001 10 6 5.6413 0.2476 0.7213 11 1 6.0842 1.2436 0.7213 12 7 6.5383 -0.6872 0.0289 13 6 7.9458 -0.3461 0.2748 14 6 8.8338 -1.3249 -0.4491 15 8 8.3426 -2.2185 -1.1058 16 7 10.1739 -1.2075 -0.3670 17 6 11.0373 -2.1587 -1.0713 18 6 12.4812 -1.8089 -0.8189 19 1 12.7308 -0.9622 -0.1964 20 6 13.4835 -2.5688 -1.3834 21 7 13.1795 -3.5994 -2.1417 22 14 15.2733 -2.1356 -1.0699 23 1 15.3468 -0.9418 -0.1898 24 1 15.9515 -3.2801 -0.4101 25 1 15.9446 -1.8401 -2.3612 26 6 5.4371 -0.2120 2.1419 27 8 5.9829 -1.2149 2.5368 28 8 4.6487 0.4929 2.9686 29 6 3.3588 1.2632 0.7213 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 2.6605 2.7674 -1.4424 34 1 1.2567 1.8015 -1.9562 35 1 2.7080 -0.1983 -2.1638 36 1 3.2994 1.1297 -3.1913 37 1 5.1655 0.0617 -1.9566 38 1 4.9433 1.7510 -1.4425 39 1 6.3400 -0.7132 -0.9601 40 1 8.1441 0.6623 -0.0883 41 1 8.1496 -0.3937 1.3446 42 1 10.5668 -0.4926 0.1579 43 1 10.8386 -3.1671 -0.7084 44 1 10.8338 -2.1108 -2.1410 45 1 13.8847 -4.1343 -2.5386 46 1 4.5485 0.1591 3.8706 47 1 3.2111 0.9313 1.7489 48 1 3.8019 2.2591 0.7216 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599110768.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:00:31 Heat of formation + Delta-G solvation = -182.608028 kcal Electronic energy + Delta-G solvation = -28816.322064 eV Core-core repulsion = 24677.834373 eV Total energy + Delta-G solvation = -4138.487691 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.81333 -39.45610 -38.77969 -37.10695 -36.21396 -34.95444 -34.07163 -32.30913 -31.74663 -30.49121 -28.24142 -27.11650 -26.67224 -25.14903 -23.02990 -22.44186 -22.18512 -20.77247 -20.03051 -19.59308 -18.18355 -17.38014 -16.83879 -16.65130 -16.23720 -15.85045 -15.64848 -15.55309 -15.23129 -15.05350 -14.84984 -14.40669 -14.14221 -14.01760 -13.62316 -13.37159 -13.28296 -12.89797 -12.69672 -12.60489 -12.30655 -12.21195 -12.05482 -11.90573 -11.64330 -11.58875 -11.45259 -11.23340 -10.93148 -10.88002 -10.83028 -10.63721 -10.43193 -10.33158 -10.29278 -9.73288 -9.34965 -9.02021 -8.71150 -8.49813 -7.82745 -6.13934 -4.20656 2.22168 2.81698 3.25161 3.32000 3.35153 3.42543 3.48602 3.72830 4.25195 4.29703 4.43459 4.48997 4.53673 4.73421 4.79527 4.94795 4.98216 4.99759 5.03336 5.12947 5.19558 5.22041 5.27319 5.32486 5.34120 5.37344 5.44854 5.48980 5.54203 5.67040 5.74463 5.81401 5.94631 5.96543 6.11140 6.21015 6.44924 6.71066 6.92267 7.26745 7.36304 7.48786 7.56532 7.70527 7.93031 8.00329 8.67095 8.81979 9.15521 9.45953 10.96337 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.022724 B = 0.002252 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.895602 B =12428.881507 C =13037.065500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.377 6.377 3 C 0.090 3.910 4 H 0.060 0.940 5 C -0.142 4.142 6 C -0.111 4.111 7 C -0.119 4.119 8 C -0.079 4.079 9 H 0.096 0.904 10 C 0.105 3.895 11 H 0.081 0.919 12 N -0.652 5.652 13 C 0.039 3.961 14 C 0.500 3.500 15 O -0.541 6.541 16 N -0.714 5.714 17 C 0.250 3.750 18 C -0.542 4.542 19 H 0.063 0.937 20 C 0.062 3.938 21 N -0.885 5.885 22 Si 0.904 3.096 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.282 1.282 26 C 0.475 3.525 27 O -0.485 6.485 28 O -0.518 6.518 29 C -0.119 4.119 30 H 0.038 0.962 31 H 0.084 0.916 32 H 0.039 0.961 33 H 0.071 0.929 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.365 0.635 40 H 0.057 0.943 41 H 0.097 0.903 42 H 0.389 0.611 43 H 0.027 0.973 44 H 0.026 0.974 45 H 0.265 0.735 46 H 0.403 0.597 47 H 0.096 0.904 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.668 16.125 6.131 30.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.296 6.296 3 C 0.032 3.968 4 H 0.078 0.922 5 C -0.180 4.180 6 C -0.148 4.148 7 C -0.157 4.157 8 C -0.098 4.098 9 H 0.114 0.886 10 C -0.007 4.007 11 H 0.099 0.901 12 N -0.290 5.290 13 C -0.093 4.093 14 C 0.284 3.716 15 O -0.419 6.419 16 N -0.363 5.363 17 C 0.130 3.870 18 C -0.580 4.580 19 H 0.081 0.919 20 C -0.141 4.141 21 N -0.523 5.523 22 Si 0.731 3.269 23 H -0.197 1.197 24 H -0.208 1.208 25 H -0.208 1.208 26 C 0.315 3.685 27 O -0.369 6.369 28 O -0.331 6.331 29 C -0.156 4.156 30 H 0.057 0.943 31 H 0.102 0.898 32 H 0.057 0.943 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.191 0.809 40 H 0.075 0.925 41 H 0.115 0.885 42 H 0.222 0.778 43 H 0.045 0.955 44 H 0.044 0.956 45 H 0.075 0.925 46 H 0.262 0.738 47 H 0.114 0.886 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -25.605 14.511 5.709 29.980 hybrid contribution 1.096 1.256 0.477 1.734 sum -24.510 15.767 6.185 29.792 Atomic orbital electron populations 1.22763 0.81578 1.02667 0.99609 1.87969 1.19095 1.27597 1.94969 1.22126 0.94744 0.84674 0.95237 0.92205 1.22052 1.00115 0.99548 0.96261 1.21367 0.94681 1.00476 0.98324 1.21671 0.98050 1.01496 0.94471 1.21151 0.92101 1.02039 0.94481 0.88595 1.21083 0.95900 0.95327 0.88415 0.90104 1.59523 1.01355 1.50725 1.17429 1.21946 0.88268 0.96887 1.02218 1.20194 0.83348 0.85976 0.82096 1.90670 1.74647 1.34541 1.42031 1.46426 1.05336 1.33254 1.51330 1.19097 0.87576 0.88065 0.92285 1.21268 0.90385 1.14383 1.31992 0.91870 1.24961 0.99640 0.94749 0.94767 1.69989 1.33237 1.17269 1.31758 0.86359 0.84087 0.78390 0.78045 1.19667 1.20798 1.20831 1.23501 0.75281 0.81440 0.88303 1.90762 1.45298 1.24508 1.76307 1.84584 1.64519 1.56788 1.27228 1.21919 0.93142 0.99781 1.00798 0.94300 0.89768 0.94268 0.91072 0.92023 0.90896 0.91881 0.91080 0.91721 0.80936 0.92547 0.88453 0.77824 0.95483 0.95569 0.92519 0.73784 0.88591 0.90520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.82 101.05 1.09 1.29 16 2 O -0.38 -3.40 9.00 -35.23 -0.32 -3.71 16 3 C 0.09 0.65 2.92 -26.73 -0.08 0.57 16 4 H 0.06 0.36 7.79 -51.93 -0.40 -0.05 16 5 C -0.14 -0.94 5.63 -26.73 -0.15 -1.09 16 6 C -0.11 -0.88 5.78 -26.73 -0.15 -1.03 16 7 C -0.12 -1.00 4.97 -26.73 -0.13 -1.14 16 8 C -0.08 -0.74 1.76 -90.62 -0.16 -0.90 16 9 H 0.10 1.13 7.68 -51.93 -0.40 0.73 16 10 C 0.10 1.13 2.17 -68.86 -0.15 0.98 16 11 H 0.08 0.71 7.80 -51.93 -0.40 0.31 16 12 N -0.65 -9.41 5.46 -109.22 -0.60 -10.00 16 13 C 0.04 0.59 5.86 -4.98 -0.03 0.56 16 14 C 0.50 10.32 7.87 -10.99 -0.09 10.23 16 15 O -0.54 -13.45 16.20 5.55 0.09 -13.36 16 16 N -0.71 -15.43 5.55 -61.48 -0.34 -15.77 16 17 C 0.25 6.79 5.43 -5.19 -0.03 6.77 16 18 C -0.54 -14.94 9.28 -34.44 -0.32 -15.26 16 19 H 0.06 1.63 7.60 -52.48 -0.40 1.23 16 20 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 21 N -0.88 -26.47 13.29 55.43 0.74 -25.73 16 22 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 23 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 26 C 0.48 5.73 7.44 36.01 0.27 6.00 16 27 O -0.48 -8.04 16.68 -18.75 -0.31 -8.36 16 28 O -0.52 -4.18 10.34 -39.25 -0.41 -4.59 16 29 C -0.12 -0.90 4.42 -26.73 -0.12 -1.02 16 30 H 0.04 0.21 7.87 -51.93 -0.41 -0.20 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.04 0.20 8.09 -51.93 -0.42 -0.21 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.38 7.87 -51.93 -0.41 -0.03 16 35 H 0.07 0.68 7.68 -51.93 -0.40 0.28 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.68 6.21 -51.93 -0.32 0.36 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.36 5.16 5.87 -39.29 -0.23 4.93 16 40 H 0.06 0.67 8.06 -51.93 -0.42 0.25 16 41 H 0.10 1.44 7.62 -51.93 -0.40 1.05 16 42 H 0.39 7.16 8.32 -40.82 -0.34 6.82 16 43 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 46 H 0.40 1.84 9.10 45.56 0.41 2.26 16 47 H 0.10 0.78 5.32 -51.93 -0.28 0.50 16 48 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 385.34 15.07 5.81 5.81 Total: -1.00 -36.40 385.34 -7.41 -43.81 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -6.91 Total: 8.19 kcal Atomic # 6 Polarization: 7.76 SS G_CDS: -0.14 Total: 7.62 kcal Atomic # 7 Polarization: -51.30 SS G_CDS: -0.20 Total: -51.50 kcal Atomic # 8 Polarization: -29.07 SS G_CDS: -0.95 Total: -30.02 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.40 -7.41 -43.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599110768.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.796 kcal (2) G-P(sol) polarization free energy of solvation -36.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds