Wall clock time and date at job start Tue Mar 31 2020 15:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 113.99859 * 2 1 4 4 C 1.53000 * 109.47195 * 179.97438 * 3 2 1 5 5 C 1.50709 * 109.87650 * 64.07431 * 4 3 2 6 6 O 1.20818 * 119.99948 * 265.69928 * 5 4 3 7 7 O 1.34226 * 119.99660 * 85.70671 * 5 4 3 8 8 C 1.54317 * 109.88991 * 302.88115 * 4 3 2 9 9 C 1.55141 * 103.01850 * 218.30954 * 8 4 3 10 10 C 1.54903 * 101.65266 * 35.64924 * 9 8 4 11 11 N 1.47437 * 109.89188 * 185.10782 * 4 3 2 12 12 C 1.46902 * 110.99934 * 356.15086 * 11 4 3 13 13 C 1.53004 * 109.47237 * 187.68008 * 12 11 4 14 14 C 1.50702 * 109.46944 * 179.97438 * 13 12 11 15 15 O 1.21282 * 120.00191 * 359.97438 * 14 13 12 16 16 N 1.34776 * 119.99650 * 179.97438 * 14 13 12 17 17 C 1.46494 * 120.00203 * 359.97438 * 16 14 13 18 18 C 1.46498 * 119.99785 * 180.02562 * 16 14 13 19 19 C 1.50701 * 109.47476 * 89.99927 * 18 16 14 20 20 H 1.08005 * 119.99365 * 359.97438 * 19 18 16 21 21 C 1.37873 * 120.00190 * 179.97438 * 19 18 16 22 22 N 1.31516 * 120.00037 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00121 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.46920 * 59.99895 * 23 21 19 25 25 H 1.48497 * 109.47203 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47007 * 300.00603 * 23 21 19 27 27 H 1.08996 * 109.47123 * 60.00028 * 1 2 3 28 28 H 1.09003 * 109.46807 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47027 * 299.99740 * 1 2 3 30 30 H 1.09004 * 109.47078 * 59.99982 * 3 2 1 31 31 H 1.09000 * 109.47176 * 300.00145 * 3 2 1 32 32 H 0.96703 * 117.00127 * 179.97438 * 7 5 4 33 33 H 1.09005 * 110.70778 * 336.68888 * 8 4 3 34 34 H 1.09003 * 110.71045 * 99.92286 * 8 4 3 35 35 H 1.09000 * 110.98804 * 277.55825 * 9 8 4 36 36 H 1.09005 * 111.02205 * 153.75812 * 9 8 4 37 37 H 1.09001 * 110.37307 * 204.09680 * 10 9 8 38 38 H 1.08999 * 110.46459 * 81.81040 * 10 9 8 39 39 H 1.09007 * 109.47183 * 307.67797 * 12 11 4 40 40 H 1.08995 * 109.47174 * 67.67158 * 12 11 4 41 41 H 1.08999 * 109.46549 * 299.99803 * 13 12 11 42 42 H 1.09001 * 109.47155 * 59.99843 * 13 12 11 43 43 H 1.09004 * 109.47095 * 89.99749 * 17 16 14 44 44 H 1.08997 * 109.47687 * 210.00186 * 17 16 14 45 45 H 1.09006 * 109.47077 * 330.00160 * 17 16 14 46 46 H 1.09001 * 109.46824 * 210.00025 * 18 16 14 47 47 H 1.08997 * 109.47276 * 329.99906 * 18 16 14 48 48 H 0.97001 * 120.00264 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 6 3.9978 0.5264 -1.2737 6 8 4.1834 -0.6671 -1.3042 7 8 4.2036 1.2660 -2.3748 8 6 3.9961 0.3582 1.2196 9 6 5.2916 1.0858 1.6658 10 6 4.9371 2.5647 1.3713 11 7 4.1444 2.5218 0.1241 12 6 3.1165 3.5712 0.1173 13 6 3.7893 4.9439 0.0537 14 6 2.7346 6.0203 0.0461 15 8 1.5605 5.7193 0.0870 16 7 3.0963 7.3176 -0.0061 17 6 4.5145 7.6813 -0.0550 18 6 2.0711 8.3641 -0.0130 19 6 1.7576 8.7695 1.4042 20 1 2.2705 8.2947 2.2277 21 6 0.8161 9.7464 1.6496 22 7 0.1913 10.3241 0.6468 23 14 0.4270 10.2485 3.4063 24 1 1.6577 10.7645 4.0578 25 1 -0.6112 11.3102 3.3993 26 1 -0.0742 9.0701 4.1583 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6885 1.8464 0.8900 31 1 1.6885 1.8464 -0.8900 32 1 4.5003 0.7992 -3.1681 33 1 3.2463 0.3867 2.0103 34 1 4.2121 -0.6699 0.9289 35 1 6.1456 0.7630 1.0704 36 1 5.4794 0.9335 2.7287 37 1 5.8445 3.1504 1.2243 38 1 4.3435 2.9835 2.1840 39 1 2.4713 3.4422 -0.7518 40 1 2.5194 3.5008 1.0265 41 1 4.4344 5.0728 0.9228 42 1 4.3863 5.0141 -0.8556 43 1 4.8396 7.7375 -1.0939 44 1 4.6580 8.6500 0.4236 45 1 5.1014 6.9267 0.4690 46 1 2.4384 9.2289 -0.5655 47 1 1.1678 7.9847 -0.4906 48 1 -0.4708 11.0117 0.8194 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599193433.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:58:39 Heat of formation + Delta-G solvation = -153.033533 kcal Electronic energy + Delta-G solvation = -29642.199210 eV Core-core repulsion = 25504.993966 eV Total energy + Delta-G solvation = -4137.205245 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.18848 -39.31371 -38.68207 -37.57306 -36.15239 -34.86719 -33.39825 -32.58552 -31.47400 -29.52864 -27.62509 -27.05535 -25.83525 -25.16992 -24.64321 -23.32355 -22.27860 -20.97828 -19.61895 -18.49466 -18.01914 -17.34322 -16.85914 -16.56164 -16.40420 -16.07070 -15.52326 -15.42466 -15.24119 -15.11886 -14.96767 -14.37380 -14.22612 -13.94307 -13.51483 -13.14984 -13.08650 -12.67799 -12.53402 -12.24207 -12.19270 -11.90484 -11.87318 -11.76875 -11.61044 -11.50776 -11.44546 -11.22914 -11.16812 -10.99827 -10.95602 -10.79397 -10.62568 -10.55154 -10.18316 -9.90162 -9.66664 -8.93296 -8.67762 -8.45640 -7.65891 -6.06458 -4.11541 2.11718 2.92047 3.13348 3.29272 3.33840 3.35169 3.43412 3.67769 4.03160 4.23862 4.38874 4.43698 4.49923 4.86677 4.92410 4.99554 5.05722 5.12676 5.16826 5.19922 5.23349 5.27685 5.30605 5.32110 5.47717 5.48690 5.58457 5.60792 5.64975 5.78955 5.81440 5.91046 5.91850 5.97409 6.03207 6.21247 6.41054 6.54959 6.71688 6.83626 7.04360 7.42479 7.52073 7.89656 7.89955 8.21259 8.40429 8.87404 9.07045 9.53565 11.01559 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.016018 B = 0.002935 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.644030 B = 9536.934194 C = 9976.457586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.049 3.951 4 C 0.116 3.884 5 C 0.509 3.491 6 O -0.513 6.513 7 O -0.498 6.498 8 C -0.120 4.120 9 C -0.133 4.133 10 C 0.036 3.964 11 N -0.506 5.506 12 C 0.059 3.941 13 C -0.133 4.133 14 C 0.505 3.495 15 O -0.547 6.547 16 N -0.602 5.602 17 C 0.084 3.916 18 C 0.245 3.755 19 C -0.527 4.527 20 H 0.056 0.944 21 C 0.061 3.939 22 N -0.895 5.895 23 Si 0.898 3.102 24 H -0.277 1.277 25 H -0.286 1.286 26 H -0.277 1.277 27 H 0.044 0.956 28 H 0.088 0.912 29 H 0.045 0.955 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.403 0.597 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.058 0.942 39 H 0.089 0.911 40 H 0.052 0.948 41 H 0.086 0.914 42 H 0.096 0.904 43 H 0.045 0.955 44 H 0.073 0.927 45 H 0.057 0.943 46 H 0.032 0.968 47 H 0.043 0.957 48 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.275 -18.589 -1.671 21.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C -0.028 4.028 4 C 0.024 3.976 5 C 0.349 3.651 6 O -0.400 6.400 7 O -0.308 6.308 8 C -0.158 4.158 9 C -0.171 4.171 10 C -0.092 4.092 11 N -0.232 5.232 12 C -0.068 4.068 13 C -0.174 4.174 14 C 0.291 3.709 15 O -0.426 6.426 16 N -0.334 5.334 17 C -0.061 4.061 18 C 0.126 3.874 19 C -0.566 4.566 20 H 0.074 0.926 21 C -0.141 4.141 22 N -0.534 5.534 23 Si 0.726 3.274 24 H -0.202 1.202 25 H -0.211 1.211 26 H -0.202 1.202 27 H 0.063 0.937 28 H 0.106 0.894 29 H 0.064 0.936 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.260 0.740 33 H 0.103 0.897 34 H 0.116 0.884 35 H 0.095 0.905 36 H 0.101 0.899 37 H 0.109 0.891 38 H 0.076 0.924 39 H 0.108 0.892 40 H 0.070 0.930 41 H 0.105 0.895 42 H 0.115 0.885 43 H 0.063 0.937 44 H 0.091 0.909 45 H 0.076 0.924 46 H 0.050 0.950 47 H 0.061 0.939 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 9.848 -18.759 -1.792 21.263 hybrid contribution -0.738 0.364 1.056 1.339 sum 9.110 -18.395 -0.736 20.541 Atomic orbital electron populations 1.22790 0.80283 1.02903 1.00581 1.87908 1.20235 1.26646 1.95543 1.23149 0.90858 0.85906 1.02904 1.21339 0.93089 0.91520 0.91652 1.22920 0.72510 0.84843 0.84780 1.90678 1.48039 1.16477 1.84815 1.84642 1.79335 1.45031 1.21743 1.22779 0.97604 1.00593 0.94817 1.22801 0.97771 0.94472 1.02063 1.23238 0.98484 0.97263 0.90165 1.63593 1.22798 1.00185 1.36609 1.22168 0.92555 0.89395 1.02714 1.21601 0.98533 0.92926 1.04312 1.20262 0.89574 0.83610 0.77438 1.90657 1.19323 1.82116 1.50475 1.48150 1.07530 1.06656 1.71077 1.21641 0.82303 1.01704 1.00403 1.19277 0.86465 0.84299 0.97373 1.21394 1.22420 1.20367 0.92424 0.92578 1.24937 0.95646 0.96136 0.97383 1.69922 1.26320 1.26422 1.30707 0.86564 0.78045 0.78170 0.84659 1.20238 1.21144 1.20224 0.93724 0.89370 0.93626 0.90682 0.91196 0.73963 0.89658 0.88389 0.90544 0.89928 0.89130 0.92414 0.89249 0.93008 0.89528 0.88549 0.93662 0.90856 0.92394 0.95035 0.93860 0.92642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.41 16 2 O -0.39 -4.72 10.02 -35.23 -0.35 -5.07 16 3 C 0.05 0.59 3.43 37.16 0.13 0.71 16 4 C 0.12 1.34 0.92 -131.76 -0.12 1.22 16 5 C 0.51 6.39 6.97 36.01 0.25 6.64 16 6 O -0.51 -7.50 16.37 -18.74 -0.31 -7.81 16 7 O -0.50 -5.32 13.16 -39.25 -0.52 -5.84 16 8 C -0.12 -1.23 5.57 -24.91 -0.14 -1.37 16 9 C -0.13 -1.13 7.08 -24.59 -0.17 -1.31 16 10 C 0.04 0.34 5.67 -2.30 -0.01 0.32 16 11 N -0.51 -5.74 4.58 -217.08 -0.99 -6.74 16 12 C 0.06 0.78 2.96 -3.82 -0.01 0.77 16 13 C -0.13 -1.85 4.26 -27.88 -0.12 -1.97 16 14 C 0.51 10.05 7.67 -10.98 -0.08 9.97 16 15 O -0.55 -13.18 15.56 5.56 0.09 -13.09 16 16 N -0.60 -12.48 2.86 -182.96 -0.52 -13.00 16 17 C 0.08 1.28 10.24 59.84 0.61 1.89 16 18 C 0.25 6.35 5.16 -5.19 -0.03 6.33 16 19 C -0.53 -14.81 9.39 -34.44 -0.32 -15.13 16 20 H 0.06 1.57 7.81 -52.48 -0.41 1.15 16 21 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 22 N -0.89 -26.44 13.29 55.43 0.74 -25.70 16 23 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 26 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 27 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.88 6.62 -51.93 -0.34 0.53 16 31 H 0.07 0.86 6.70 -51.93 -0.35 0.52 16 32 H 0.40 2.50 9.10 45.56 0.41 2.91 16 33 H 0.08 0.83 7.85 -51.93 -0.41 0.42 16 34 H 0.10 1.12 6.80 -51.93 -0.35 0.76 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.06 0.55 7.66 -51.93 -0.40 0.15 16 39 H 0.09 1.29 6.29 -51.93 -0.33 0.96 16 40 H 0.05 0.73 6.60 -51.93 -0.34 0.39 16 41 H 0.09 1.06 6.67 -51.93 -0.35 0.71 16 42 H 0.10 1.21 8.11 -51.93 -0.42 0.79 16 43 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.07 1.16 8.07 -51.93 -0.42 0.75 16 45 H 0.06 0.71 6.44 -51.93 -0.33 0.38 16 46 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 47 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 48 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 388.00 15.07 5.85 5.85 Total: -1.00 -35.52 388.00 -6.98 -42.51 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -6.93 Total: 1.17 kcal Atomic # 6 Polarization: 10.13 SS G_CDS: 0.99 Total: 11.12 kcal Atomic # 7 Polarization: -44.66 SS G_CDS: -0.78 Total: -45.44 kcal Atomic # 8 Polarization: -30.72 SS G_CDS: -1.09 Total: -31.81 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.52 -6.98 -42.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599193433.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.526 kcal (2) G-P(sol) polarization free energy of solvation -35.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds