Wall clock time and date at job start Tue Mar 31 2020 15:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09000 * 109.55593 * 2 1 4 4 C 1.53295 * 109.51283 * 120.12709 * 2 1 3 5 5 N 1.47160 * 108.38471 * 172.22559 * 4 2 1 6 6 C 1.34776 * 120.98058 * 129.48689 * 5 4 2 7 7 O 1.21589 * 119.99934 * 354.78344 * 6 5 4 8 8 N 1.34772 * 119.99819 * 174.78193 * 6 5 4 9 9 C 1.46502 * 119.99809 * 184.97483 * 8 6 5 10 10 C 1.53006 * 109.47017 * 180.02562 * 9 8 6 11 11 C 1.53002 * 109.47029 * 300.00207 * 10 9 8 12 12 C 1.52996 * 109.47061 * 59.99898 * 10 9 8 13 13 C 1.53001 * 109.47085 * 180.02562 * 10 9 8 14 14 C 1.50701 * 109.47022 * 180.02562 * 13 10 9 15 15 H 1.08001 * 119.99635 * 359.97438 * 14 13 10 16 16 C 1.37875 * 120.00092 * 179.97438 * 14 13 10 17 17 N 1.31515 * 119.99490 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00148 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47196 * 60.00116 * 18 16 14 20 20 H 1.48498 * 109.47333 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47182 * 300.00325 * 18 16 14 22 22 C 1.47150 * 118.03667 * 309.46409 * 5 4 2 23 23 C 1.53300 * 108.38098 * 50.53400 * 22 5 4 24 24 H 1.09006 * 109.50938 * 67.62497 * 23 22 5 25 25 C 1.50701 * 109.55236 * 187.74663 * 23 22 5 26 26 O 1.20826 * 120.00124 * 114.87674 * 25 23 22 27 27 O 1.34231 * 120.00282 * 294.87571 * 25 23 22 28 28 O 1.42955 * 109.22574 * 307.69620 * 23 22 5 29 29 H 1.09004 * 109.47506 * 180.12571 * 1 2 3 30 30 H 1.08995 * 109.47403 * 300.12611 * 1 2 3 31 31 H 1.09002 * 109.47639 * 60.12891 * 1 2 3 32 32 H 1.08999 * 109.68294 * 291.94788 * 4 2 1 33 33 H 1.08996 * 109.68132 * 52.50585 * 4 2 1 34 34 H 0.97002 * 120.00367 * 4.98246 * 8 6 5 35 35 H 1.08992 * 109.47304 * 300.00139 * 9 8 6 36 36 H 1.08998 * 109.47109 * 60.00520 * 9 8 6 37 37 H 1.08999 * 109.46994 * 59.99800 * 11 10 9 38 38 H 1.08996 * 109.46856 * 180.02562 * 11 10 9 39 39 H 1.08998 * 109.47193 * 299.99830 * 11 10 9 40 40 H 1.09000 * 109.47272 * 60.00425 * 12 10 9 41 41 H 1.09006 * 109.47008 * 179.97438 * 12 10 9 42 42 H 1.08995 * 109.47473 * 299.99931 * 12 10 9 43 43 H 1.08996 * 109.46845 * 300.00185 * 13 10 9 44 44 H 1.08998 * 109.47198 * 60.00132 * 13 10 9 45 45 H 0.97002 * 119.99711 * 179.97438 * 17 16 14 46 46 H 1.09002 * 109.68138 * 290.81716 * 22 5 4 47 47 H 1.09000 * 109.68169 * 170.25655 * 22 5 4 48 48 H 0.96700 * 117.00492 * 179.97438 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8948 1.0271 0.0000 4 6 2.0419 -0.7252 1.2497 5 7 3.5011 -0.8762 1.1336 6 6 4.3192 -0.5042 2.1379 7 8 3.8637 0.0507 3.1192 8 7 5.6422 -0.7474 2.0546 9 6 6.5159 -0.4428 3.1904 10 6 7.9586 -0.8098 2.8369 11 6 8.0409 -2.3037 2.5164 12 6 8.4065 -0.0013 1.6177 13 6 8.8710 -0.4923 4.0233 14 6 10.2921 -0.8533 3.6749 15 1 10.5214 -1.2681 2.7045 16 6 11.2994 -0.6539 4.5950 17 7 11.0199 -0.1493 5.7769 18 14 13.0607 -1.1020 4.1634 19 1 13.4953 -0.3172 2.9800 20 1 13.9463 -0.7937 5.3148 21 1 13.1406 -2.5519 3.8523 22 6 4.0406 -1.4458 -0.1114 23 6 3.4311 -0.6855 -1.2948 24 1 3.8029 0.3392 -1.2994 25 6 3.8152 -1.3661 -2.5833 26 8 2.9652 -1.8773 -3.2732 27 8 5.1017 -1.4045 -2.9646 28 8 2.0075 -0.6764 -1.1655 29 1 -0.3634 -1.0277 0.0023 30 1 -0.3634 0.5158 0.8888 31 1 -0.3634 0.5118 -0.8911 32 1 1.8030 -0.1399 2.1376 33 1 1.5757 -1.7079 1.3208 34 1 6.0160 -1.1240 1.2426 35 1 6.4577 0.6214 3.4185 36 1 6.1966 -1.0185 4.0591 37 1 7.3908 -2.5302 1.6713 38 1 9.0687 -2.5652 2.2650 39 1 7.7218 -2.8797 3.3849 40 1 8.3479 1.0629 1.8460 41 1 9.4344 -0.2625 1.3661 42 1 7.7565 -0.2279 0.7727 43 1 8.8124 0.5718 4.2521 44 1 8.5518 -1.0687 4.8916 45 1 11.7286 -0.0094 6.4243 46 1 3.7755 -2.5011 -0.1774 47 1 5.1252 -1.3376 -0.1248 48 1 5.2993 -1.8525 -3.7984 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599919763.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:11 Heat of formation + Delta-G solvation = -164.140678 kcal Electronic energy + Delta-G solvation = -29385.424641 eV Core-core repulsion = 25247.737755 eV Total energy + Delta-G solvation = -4137.686887 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.23666 -40.24570 -38.91104 -37.21469 -36.52806 -35.04085 -33.96257 -33.25719 -32.04028 -29.79583 -27.52169 -26.95418 -26.54843 -25.76747 -25.04321 -22.87928 -22.22796 -21.49116 -19.95426 -18.98188 -18.54185 -17.75331 -17.15591 -16.96693 -16.77941 -16.34405 -16.10376 -15.58154 -15.40324 -14.69230 -14.49554 -14.33765 -14.20211 -13.99116 -13.42670 -13.32171 -13.11886 -12.83412 -12.73965 -12.68075 -12.31433 -12.17224 -12.07470 -12.01858 -11.82475 -11.35250 -11.19993 -11.03023 -10.90219 -10.84429 -10.66048 -10.58286 -10.42981 -10.28963 -10.12670 -9.90741 -9.23762 -9.05740 -8.96150 -8.59716 -8.37380 -6.01570 -4.03055 1.65672 2.02220 2.39519 3.16220 3.30571 3.36316 3.37189 3.47113 3.81035 4.02997 4.33886 4.43640 4.49596 4.55372 4.66315 4.76797 4.81412 5.12133 5.20218 5.31722 5.33883 5.39809 5.46125 5.56284 5.60122 5.70925 5.74942 5.99836 6.02554 6.13098 6.19075 6.23115 6.36675 6.51137 6.52922 6.59653 6.70346 6.79326 7.02916 7.04456 7.09937 7.42777 7.61874 7.74133 7.91696 7.97063 8.38251 8.58172 9.01476 9.60098 11.09851 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.018150 B = 0.002751 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.342097 B =10174.871994 C =11418.337329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.075 3.925 3 H 0.070 0.930 4 C 0.099 3.901 5 N -0.637 5.637 6 C 0.707 3.293 7 O -0.584 6.584 8 N -0.735 5.735 9 C 0.145 3.855 10 C -0.073 4.073 11 C -0.126 4.126 12 C -0.126 4.126 13 C 0.037 3.963 14 C -0.512 4.512 15 H 0.059 0.941 16 C 0.057 3.943 17 N -0.894 5.894 18 Si 0.889 3.111 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.278 1.278 22 C 0.093 3.907 23 C 0.091 3.909 24 H 0.105 0.895 25 C 0.489 3.511 26 O -0.489 6.489 27 O -0.508 6.508 28 O -0.354 6.354 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.109 0.891 33 H 0.076 0.924 34 H 0.393 0.607 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.026 0.974 38 H 0.067 0.933 39 H 0.048 0.952 40 H 0.048 0.952 41 H 0.067 0.933 42 H 0.027 0.973 43 H 0.019 0.981 44 H 0.019 0.981 45 H 0.261 0.739 46 H 0.084 0.916 47 H 0.102 0.898 48 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.287 -1.690 -16.007 23.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.017 3.983 3 H 0.088 0.912 4 C -0.024 4.024 5 N -0.377 5.377 6 C 0.409 3.591 7 O -0.461 6.461 8 N -0.392 5.392 9 C 0.022 3.978 10 C -0.073 4.073 11 C -0.183 4.183 12 C -0.183 4.183 13 C 0.000 4.000 14 C -0.550 4.550 15 H 0.077 0.923 16 C -0.145 4.145 17 N -0.534 5.534 18 Si 0.717 3.283 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.203 1.203 22 C -0.032 4.032 23 C 0.030 3.970 24 H 0.122 0.878 25 C 0.328 3.672 26 O -0.374 6.374 27 O -0.321 6.321 28 O -0.273 6.273 29 H 0.088 0.912 30 H 0.099 0.901 31 H 0.088 0.912 32 H 0.127 0.873 33 H 0.094 0.906 34 H 0.231 0.769 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.045 0.955 38 H 0.086 0.914 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.086 0.914 42 H 0.046 0.954 43 H 0.037 0.963 44 H 0.037 0.963 45 H 0.070 0.930 46 H 0.102 0.898 47 H 0.120 0.880 48 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -17.959 -1.269 -15.006 23.437 hybrid contribution 1.559 -0.619 -0.995 1.951 sum -16.399 -1.888 -16.000 22.989 Atomic orbital electron populations 1.21721 0.91344 1.03639 1.03234 1.22692 0.96030 0.95585 0.84011 0.91169 1.22250 0.78674 1.01979 0.99534 1.47277 1.06613 1.68082 1.15706 1.15844 0.81550 0.79217 0.82489 1.90922 1.75478 1.47732 1.32002 1.45565 1.05419 1.68394 1.19778 1.21556 0.88893 1.00708 0.86685 1.20929 0.92237 0.95183 0.98986 1.21756 1.01698 0.95643 0.99249 1.21753 1.01316 0.99657 0.95611 1.19079 0.92936 0.97110 0.90920 1.21137 0.92015 1.41820 1.00075 0.92307 1.25008 0.98903 0.95436 0.95108 1.69954 1.32853 1.44731 1.05820 0.86710 0.84907 0.78860 0.77810 1.20325 1.21404 1.20341 1.22089 0.99728 0.98245 0.83134 1.21620 0.84765 1.00521 0.90075 0.87790 1.22560 0.80407 0.77416 0.86769 1.90765 1.50947 1.41814 1.53890 1.84479 1.28070 1.73970 1.45623 1.88020 1.17061 1.77888 1.44327 0.91247 0.90128 0.91196 0.87260 0.90595 0.76936 0.91754 0.91894 0.95464 0.91376 0.93320 0.93298 0.91376 0.95423 0.96285 0.96305 0.92961 0.89779 0.87991 0.72080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.90 9.57 37.15 0.36 -0.55 16 2 C 0.07 0.63 3.40 -26.58 -0.09 0.54 16 3 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 4 C 0.10 0.96 5.94 -3.53 -0.02 0.94 16 5 N -0.64 -7.18 3.02 -178.00 -0.54 -7.72 16 6 C 0.71 10.51 8.31 -86.92 -0.72 9.79 16 7 O -0.58 -10.88 15.82 5.29 0.08 -10.80 16 8 N -0.73 -10.41 4.87 -65.23 -0.32 -10.73 16 9 C 0.14 2.49 4.57 -4.04 -0.02 2.47 16 10 C -0.07 -1.33 0.54 -154.51 -0.08 -1.42 16 11 C -0.13 -2.13 8.05 37.16 0.30 -1.83 16 12 C -0.13 -2.12 8.05 37.16 0.30 -1.82 16 13 C 0.04 0.89 4.04 -27.88 -0.11 0.77 16 14 C -0.51 -13.31 7.65 -34.44 -0.26 -13.58 16 15 H 0.06 1.46 5.68 -52.49 -0.30 1.16 16 16 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 17 N -0.89 -26.09 13.29 55.43 0.74 -25.35 16 18 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 22 C 0.09 0.82 5.84 -3.53 -0.02 0.80 16 23 C 0.09 0.80 3.30 -27.73 -0.09 0.71 16 24 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 25 C 0.49 4.40 7.66 36.01 0.28 4.68 16 26 O -0.49 -6.05 17.27 -25.46 -0.44 -6.49 16 27 O -0.51 -3.11 13.42 -39.26 -0.53 -3.64 16 28 O -0.35 -3.60 9.57 -55.11 -0.53 -4.13 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.11 1.16 7.06 -51.93 -0.37 0.79 16 33 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.39 4.71 3.72 -40.82 -0.15 4.55 16 35 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.03 0.37 6.86 -51.93 -0.36 0.01 16 38 H 0.07 1.24 6.62 -51.93 -0.34 0.90 16 39 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.07 1.24 6.62 -51.93 -0.34 0.89 16 42 H 0.03 0.37 6.86 -51.93 -0.36 0.01 16 43 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 46 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 47 H 0.10 0.80 5.78 -51.93 -0.30 0.50 16 48 H 0.42 0.84 9.10 45.56 0.41 1.25 16 LS Contribution 382.91 15.07 5.77 5.77 Total: -1.00 -34.31 382.91 -7.80 -42.11 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -6.73 Total: 2.14 kcal Atomic # 6 Polarization: 3.25 SS G_CDS: -0.29 Total: 2.96 kcal Atomic # 7 Polarization: -43.68 SS G_CDS: -0.12 Total: -43.80 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: -1.41 Total: -25.06 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.31 -7.80 -42.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599919763.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.033 kcal (2) G-P(sol) polarization free energy of solvation -34.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds