Wall clock time and date at job start Tue Mar 31 2020 15:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09000 * 109.55593 * 2 1 4 4 C 1.53295 * 109.51283 * 120.12709 * 2 1 3 5 5 N 1.47160 * 108.38471 * 172.22559 * 4 2 1 6 6 C 1.34776 * 120.98058 * 129.48689 * 5 4 2 7 7 O 1.21589 * 119.99934 * 354.78344 * 6 5 4 8 8 N 1.34772 * 119.99819 * 174.78193 * 6 5 4 9 9 C 1.46502 * 119.99809 * 184.97483 * 8 6 5 10 10 C 1.53006 * 109.47017 * 180.02562 * 9 8 6 11 11 C 1.53002 * 109.47029 * 300.00207 * 10 9 8 12 12 C 1.52996 * 109.47061 * 59.99898 * 10 9 8 13 13 C 1.53001 * 109.47085 * 180.02562 * 10 9 8 14 14 C 1.50701 * 109.47022 * 180.02562 * 13 10 9 15 15 H 1.08001 * 119.99635 * 359.97438 * 14 13 10 16 16 C 1.37875 * 120.00092 * 179.97438 * 14 13 10 17 17 N 1.31515 * 119.99490 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00148 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47196 * 60.00116 * 18 16 14 20 20 H 1.48498 * 109.47333 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47182 * 300.00325 * 18 16 14 22 22 C 1.47150 * 118.03667 * 309.46409 * 5 4 2 23 23 C 1.53300 * 108.38098 * 50.53400 * 22 5 4 24 24 H 1.09006 * 109.50938 * 67.62497 * 23 22 5 25 25 C 1.50701 * 109.55236 * 187.74663 * 23 22 5 26 26 O 1.20826 * 120.00124 * 114.87674 * 25 23 22 27 27 O 1.34231 * 120.00282 * 294.87571 * 25 23 22 28 28 O 1.42955 * 109.22574 * 307.69620 * 23 22 5 29 29 H 1.09004 * 109.47506 * 180.12571 * 1 2 3 30 30 H 1.08995 * 109.47403 * 300.12611 * 1 2 3 31 31 H 1.09002 * 109.47639 * 60.12891 * 1 2 3 32 32 H 1.08999 * 109.68294 * 291.94788 * 4 2 1 33 33 H 1.08996 * 109.68132 * 52.50585 * 4 2 1 34 34 H 0.97002 * 120.00367 * 4.98246 * 8 6 5 35 35 H 1.08992 * 109.47304 * 300.00139 * 9 8 6 36 36 H 1.08998 * 109.47109 * 60.00520 * 9 8 6 37 37 H 1.08999 * 109.46994 * 59.99800 * 11 10 9 38 38 H 1.08996 * 109.46856 * 180.02562 * 11 10 9 39 39 H 1.08998 * 109.47193 * 299.99830 * 11 10 9 40 40 H 1.09000 * 109.47272 * 60.00425 * 12 10 9 41 41 H 1.09006 * 109.47008 * 179.97438 * 12 10 9 42 42 H 1.08995 * 109.47473 * 299.99931 * 12 10 9 43 43 H 1.08996 * 109.46845 * 300.00185 * 13 10 9 44 44 H 1.08998 * 109.47198 * 60.00132 * 13 10 9 45 45 H 0.97002 * 119.99711 * 179.97438 * 17 16 14 46 46 H 1.09002 * 109.68138 * 290.81716 * 22 5 4 47 47 H 1.09000 * 109.68169 * 170.25655 * 22 5 4 48 48 H 0.96700 * 117.00492 * 179.97438 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8948 1.0271 0.0000 4 6 2.0419 -0.7252 1.2497 5 7 3.5011 -0.8762 1.1336 6 6 4.3192 -0.5042 2.1379 7 8 3.8637 0.0507 3.1192 8 7 5.6422 -0.7474 2.0546 9 6 6.5159 -0.4428 3.1904 10 6 7.9586 -0.8098 2.8369 11 6 8.0409 -2.3037 2.5164 12 6 8.4065 -0.0013 1.6177 13 6 8.8710 -0.4923 4.0233 14 6 10.2921 -0.8533 3.6749 15 1 10.5214 -1.2681 2.7045 16 6 11.2994 -0.6539 4.5950 17 7 11.0199 -0.1493 5.7769 18 14 13.0607 -1.1020 4.1634 19 1 13.4953 -0.3172 2.9800 20 1 13.9463 -0.7937 5.3148 21 1 13.1406 -2.5519 3.8523 22 6 4.0406 -1.4458 -0.1114 23 6 3.4311 -0.6855 -1.2948 24 1 3.8029 0.3392 -1.2994 25 6 3.8152 -1.3661 -2.5833 26 8 2.9652 -1.8773 -3.2732 27 8 5.1017 -1.4045 -2.9646 28 8 2.0075 -0.6764 -1.1655 29 1 -0.3634 -1.0277 0.0023 30 1 -0.3634 0.5158 0.8888 31 1 -0.3634 0.5118 -0.8911 32 1 1.8030 -0.1399 2.1376 33 1 1.5757 -1.7079 1.3208 34 1 6.0160 -1.1240 1.2426 35 1 6.4577 0.6214 3.4185 36 1 6.1966 -1.0185 4.0591 37 1 7.3908 -2.5302 1.6713 38 1 9.0687 -2.5652 2.2650 39 1 7.7218 -2.8797 3.3849 40 1 8.3479 1.0629 1.8460 41 1 9.4344 -0.2625 1.3661 42 1 7.7565 -0.2279 0.7727 43 1 8.8124 0.5718 4.2521 44 1 8.5518 -1.0687 4.8916 45 1 11.7286 -0.0094 6.4243 46 1 3.7755 -2.5011 -0.1774 47 1 5.1252 -1.3376 -0.1248 48 1 5.2993 -1.8525 -3.7984 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599919763.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:10 Heat of formation + Delta-G solvation = -187.932371 kcal Electronic energy + Delta-G solvation = -29386.456327 eV Core-core repulsion = 25247.737755 eV Total energy + Delta-G solvation = -4138.718572 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -42.05677 -41.14964 -39.83022 -38.64102 -37.17486 -36.02630 -35.27772 -34.32069 -33.67899 -30.52998 -29.14707 -28.24273 -27.93283 -26.83919 -25.99076 -24.63486 -22.90702 -22.27981 -21.05274 -20.17780 -19.19259 -19.03915 -18.34014 -17.89762 -17.79085 -17.46683 -17.04715 -16.64147 -16.52385 -16.17994 -15.65275 -15.45643 -15.34211 -14.89355 -14.66756 -14.57070 -14.35504 -13.92952 -13.87557 -13.74398 -13.42333 -13.16570 -13.06373 -12.82173 -12.73390 -12.64071 -12.56041 -12.46845 -12.29967 -12.20313 -12.05520 -11.95649 -11.70333 -11.50963 -11.37016 -11.27718 -10.95837 -10.83567 -10.47946 -10.24544 -9.60687 -8.11417 -6.18958 0.97156 1.40061 1.44257 1.45302 1.46398 1.53602 2.01166 2.46055 2.72416 2.87511 3.23287 3.33596 3.66175 3.81502 3.89244 3.98813 4.02197 4.11738 4.13224 4.23132 4.26023 4.44211 4.48744 4.70941 4.72748 4.75740 4.80357 4.82422 4.96526 4.99003 5.12078 5.15621 5.17227 5.29378 5.39596 5.49058 5.50875 5.54012 5.56660 5.60412 5.73040 5.83741 5.87659 5.92904 6.33435 6.82567 6.91000 6.96463 7.43246 7.48800 9.00930 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.018150 B = 0.002751 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.342097 B =10174.871994 C =11418.337329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.079 3.921 3 H 0.071 0.929 4 C 0.096 3.904 5 N -0.630 5.630 6 C 0.707 3.293 7 O -0.626 6.626 8 N -0.723 5.723 9 C 0.160 3.840 10 C -0.064 4.064 11 C -0.121 4.121 12 C -0.121 4.121 13 C 0.041 3.959 14 C -0.513 4.513 15 H 0.074 0.926 16 C -0.005 4.005 17 N -0.939 5.939 18 Si 0.957 3.043 19 H -0.266 1.266 20 H -0.293 1.293 21 H -0.267 1.267 22 C 0.092 3.908 23 C 0.088 3.912 24 H 0.117 0.883 25 C 0.500 3.500 26 O -0.528 6.528 27 O -0.498 6.498 28 O -0.369 6.369 29 H 0.069 0.931 30 H 0.094 0.906 31 H 0.072 0.928 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.407 0.593 35 H 0.046 0.954 36 H 0.045 0.955 37 H 0.068 0.932 38 H 0.056 0.944 39 H 0.036 0.964 40 H 0.037 0.963 41 H 0.056 0.944 42 H 0.069 0.931 43 H -0.013 1.013 44 H -0.014 1.014 45 H 0.259 0.741 46 H 0.094 0.906 47 H 0.117 0.883 48 H 0.438 0.562 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.220 -2.637 -18.820 25.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.021 3.979 3 H 0.089 0.911 4 C -0.026 4.026 5 N -0.368 5.368 6 C 0.408 3.592 7 O -0.507 6.507 8 N -0.381 5.381 9 C 0.035 3.965 10 C -0.065 4.065 11 C -0.178 4.178 12 C -0.178 4.178 13 C 0.003 3.997 14 C -0.551 4.551 15 H 0.092 0.908 16 C -0.202 4.202 17 N -0.580 5.580 18 Si 0.782 3.218 19 H -0.191 1.191 20 H -0.219 1.219 21 H -0.192 1.192 22 C -0.032 4.032 23 C 0.028 3.972 24 H 0.135 0.865 25 C 0.341 3.659 26 O -0.416 6.416 27 O -0.313 6.313 28 O -0.289 6.289 29 H 0.088 0.912 30 H 0.113 0.887 31 H 0.091 0.909 32 H 0.116 0.884 33 H 0.104 0.896 34 H 0.247 0.753 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.087 0.913 38 H 0.075 0.925 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.075 0.925 42 H 0.088 0.912 43 H 0.005 0.995 44 H 0.005 0.995 45 H 0.068 0.932 46 H 0.112 0.888 47 H 0.135 0.865 48 H 0.302 0.698 Dipole moment (debyes) X Y Z Total from point charges -17.883 -2.245 -17.901 25.402 hybrid contribution 1.499 -0.317 -0.141 1.538 sum -16.384 -2.561 -18.042 24.505 Atomic orbital electron populations 1.21741 0.89860 1.03951 1.04060 1.22739 0.97149 0.95171 0.82860 0.91073 1.22384 0.77786 1.02600 0.99865 1.47248 1.06885 1.67074 1.15595 1.15929 0.81671 0.78911 0.82656 1.90901 1.76201 1.49606 1.34016 1.45203 1.05067 1.68458 1.19324 1.21117 0.88800 0.99275 0.87288 1.20721 0.91519 0.96922 0.97332 1.21690 1.01959 0.93784 1.00392 1.21688 1.01543 0.98612 0.95964 1.18959 0.93965 0.94434 0.92353 1.21571 0.92730 1.40431 1.00349 0.90817 1.25932 1.03539 0.95662 0.95037 1.70116 1.34075 1.46682 1.07142 0.85620 0.79502 0.79094 0.77549 1.19099 1.21902 1.19171 1.22265 1.00508 0.98625 0.81791 1.21714 0.84313 1.01198 0.89992 0.86541 1.22507 0.80713 0.76354 0.86304 1.90762 1.52172 1.43615 1.55087 1.84439 1.26228 1.73756 1.46857 1.88023 1.17893 1.78151 1.44807 0.91197 0.88724 0.90940 0.88400 0.89593 0.75282 0.93540 0.93648 0.91320 0.92454 0.94460 0.94381 0.92460 0.91236 0.99502 0.99550 0.93228 0.88791 0.86512 0.69849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.57 71.98 0.69 -0.85 16 2 C 0.08 1.20 3.40 30.69 0.10 1.30 16 3 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 4 C 0.10 1.74 5.94 86.35 0.51 2.25 16 5 N -0.63 -12.95 3.02 -835.33 -2.52 -15.47 16 6 C 0.71 20.11 8.31 179.06 1.49 21.59 16 7 O -0.63 -23.42 15.82 -4.00 -0.06 -23.48 16 8 N -0.72 -19.07 4.87 -478.54 -2.33 -21.40 16 9 C 0.16 5.50 4.57 86.38 0.39 5.89 16 10 C -0.06 -2.32 0.54 -52.18 -0.03 -2.35 16 11 C -0.12 -3.84 8.05 71.98 0.58 -3.26 16 12 C -0.12 -3.81 8.05 71.98 0.58 -3.23 16 13 C 0.04 2.01 4.04 29.85 0.12 2.13 16 14 C -0.51 -26.78 7.65 25.60 0.20 -26.58 16 15 H 0.07 3.57 5.68 -2.91 -0.02 3.55 16 16 C 0.00 -0.27 5.46 84.65 0.46 0.19 16 17 N -0.94 -56.46 13.29 21.45 0.28 -56.18 16 18 Si 0.96 42.79 29.54 68.60 2.03 44.82 16 19 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 20 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 21 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 22 C 0.09 1.34 5.84 86.36 0.50 1.84 16 23 C 0.09 1.32 3.30 29.95 0.10 1.41 16 24 H 0.12 1.46 8.14 -2.38 -0.02 1.44 16 25 C 0.50 7.68 7.66 71.24 0.55 8.23 16 26 O -0.53 -12.15 17.27 28.38 0.49 -11.66 16 27 O -0.50 -4.34 13.42 -51.42 -0.69 -5.03 16 28 O -0.37 -6.78 9.57 -129.97 -1.24 -8.03 16 29 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 30 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.10 2.03 7.06 -2.39 -0.02 2.01 16 33 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.41 8.22 3.72 -92.71 -0.34 7.87 16 35 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.07 1.60 6.86 -2.39 -0.02 1.58 16 38 H 0.06 1.95 6.62 -2.39 -0.02 1.94 16 39 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.06 1.94 6.62 -2.38 -0.02 1.93 16 42 H 0.07 1.60 6.86 -2.39 -0.02 1.58 16 43 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 44 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 45 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 46 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 47 H 0.12 1.33 5.78 -2.39 -0.01 1.32 16 48 H 0.44 0.26 9.10 -74.06 -0.67 -0.41 16 Total: -1.00 -76.62 382.91 2.17 -74.46 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -0.03 Total: 13.40 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: 6.25 Total: 8.57 kcal Atomic # 7 Polarization: -88.48 SS G_CDS: -4.57 Total: -93.05 kcal Atomic # 8 Polarization: -46.69 SS G_CDS: -1.51 Total: -48.20 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -76.62 2.17 -74.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599919763.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.475 kcal (2) G-P(sol) polarization free energy of solvation -76.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds